BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521502.2.2
(1862 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW985104.1|AW985104 NXNV_133_A03_F Nsf Xylem Normal wood... 88 2e-015
gb|CO199518.1|CO199518 GEO2_1_F10.g1_A032 Root gravitropism... 74 2e-011
gb|CO199449.1|CO199449 GEO2_1_F10.b1_A032 Root gravitropism... 72 9e-011
gb|AL751298.1|AL751298 AL751298 RS Pinus pinaster cDNA clon... 66 6e-009
gb|BX252311.1|BX252311 BX252311 Pinus pinaster differenciat... 66 6e-009
gb|AW985324.1|AW985324 NXNV_135_H04_F Nsf Xylem Normal wood... 66 6e-009
gb|BE458111.1|BE458111 NXCI_008_F07_F NXCI (Nsf Xylem Compr... 66 6e-009
gb|BM428592.1|BM428592 NXRV_019_A07_F NXRV (Nsf Xylem Root ... 66 6e-009
gb|CF398375.1|CF398375 RTDS3_12_E06.b1_A022 Drought-stresse... 66 6e-009
gb|CF398437.1|CF398437 RTDS3_12_E06.g1_A022 Drought-stresse... 66 6e-009
gb|CF471990.1|CF471990 RTDS1_7_G03.g1_A015 Drought-stressed... 66 6e-009
gb|BX682808.1|BX682808 BX682808 Pinus pinaster differenciat... 66 6e-009
gb|CO165091.1|CO165091 FLD1_52_G05.b1_A029 Root flooded Pin... 66 6e-009
gb|CO165167.1|CO165167 FLD1_52_G05.g1_A029 Root flooded Pin... 66 6e-009
gb|CO167274.1|CO167274 FLD1_68_A07.b1_A029 Root flooded Pin... 66 6e-009
gb|CO167354.1|CO167354 FLD1_68_A07.g1_A029 Root flooded Pin... 66 6e-009
gb|CO171100.1|CO171100 NDL1_19_B11.b1_A029 Needles control ... 66 6e-009
gb|CO171152.1|CO171152 NDL1_19_B11.g1_A029 Needles control ... 66 6e-009
gb|CO198528.1|CO198528 GEO1_14_H05.b1_A029 Root gravitropis... 66 6e-009
gb|CO201321.1|CO201321 RTCNT2_5_B04.b1_A029 Root control 2 ... 66 6e-009
gb|CO364426.1|CO364426 RTK1_15_D07.g1_A029 Roots minus pota... 66 6e-009
gb|CO369007.1|CO369007 RTK1_44_G12.b1_A029 Roots minus pota... 66 6e-009
gb|CX712540.1|CX712540 RTPQ1_3_D08.b2_A032 Roots treated wi... 66 6e-009
gb|CX712619.1|CX712619 RTPQ1_3_D08.g1_A032 Roots treated wi... 66 6e-009
gb|CX714844.1|CX714844 RTPQ1_27_B02.g1_A032 Roots treated w... 66 6e-009
gb|DR012805.1|DR012805 HEAT1_15_D05.b1_A029 Root at 37 C fo... 66 6e-009
gb|DR013603.1|DR013603 HEAT1_20_G08.b1_A029 Root at 37 C fo... 66 6e-009
gb|DR015048.1|DR015048 STRS1_1_E04.b1_A034 Shoot tip pitch ... 66 6e-009
gb|DR017559.1|DR017559 STRS1_17_C06.b1_A034 Shoot tip pitch... 66 6e-009
gb|DR017640.1|DR017640 STRS1_17_C06.g1_A034 Shoot tip pitch... 66 6e-009
gb|DR020619.1|DR020619 STRS1_38_E06.b1_A034 Shoot tip pitch... 66 6e-009
gb|DR020694.1|DR020694 STRS1_38_E06.g1_A034 Shoot tip pitch... 66 6e-009
gb|DR022761.1|DR022761 STRS1_53_G05.b1_A034 Shoot tip pitch... 66 6e-009
gb|DR022838.1|DR022838 STRS1_53_G05.g1_A034 Shoot tip pitch... 66 6e-009
gb|DR023668.1|DR023668 STRS1_59_F05.b1_A034 Shoot tip pitch... 66 6e-009
gb|DR050120.1|DR050120 RTBOR1_21_H12.b1_A029 Roots plus add... 66 6e-009
gb|DR059638.1|DR059638 RTNIT1_18_G11.g1_A029 Roots minus ni... 66 6e-009
gb|DR070564.1|DR070564 RTDK1_14_D03.b1_A029 Roots, dark Pin... 66 6e-009
gb|DR093933.1|DR093933 STRR1_11_H02.b1_A033 Stem Response R... 66 6e-009
gb|DR177175.1|DR177175 RTMNUT1_3_C10.g1_A029 Roots minus mi... 66 6e-009
gb|DR178812.1|DR178812 RTMNUT1_14_D10.b1_A029 Roots minus m... 66 6e-009
gb|DR178895.1|DR178895 RTMNUT1_14_D10.g1_A029 Roots minus m... 66 6e-009
gb|BE123631.1|BE123631 NXNV_150_A07_F Nsf Xylem Normal wood... 62 9e-008
gb|BM428593.1|BM428593 NXRV_019_A08_F NXRV (Nsf Xylem Root ... 58 1e-006
gb|CO160935.1|CO160935 FLD1_25_C05.g1_A029 Root flooded Pin... 58 1e-006
gb|DR177099.1|DR177099 RTMNUT1_3_C10.b1_A029 Roots minus mi... 58 1e-006
gb|AW010129.1|AW010129 ST02C10 Pine TriplEx shoot tip libra... 54 2e-005
gb|BQ699231.1|BQ699231 NXRV121_B03_F NXRV (Nsf Xylem Root w... 54 2e-005
gb|CF385673.1|CF385673 RTDR1_5_B07.g1_A015 Loblolly pine ro... 54 2e-005
gb|CF390361.1|CF390361 RTDR2_19_H08.b1_A021 Loblolly pine r... 54 2e-005
gb|CF390820.1|CF390820 RTDR3_2_D03.b1_A022 Loblolly pine ro... 54 2e-005
gb|CF390910.1|CF390910 RTDR3_2_D03.g1_A022 Loblolly pine ro... 54 2e-005
gb|CF392022.1|CF392022 RTDR3_12_H09.g1_A022 Loblolly pine r... 54 2e-005
gb|CF392344.1|CF392344 RTDR3_7_H01.b1_A022 Loblolly pine ro... 54 2e-005
gb|CF393265.1|CF393265 RTDR3_20_F10.b1_A022 Loblolly pine r... 54 2e-005
gb|CF393883.1|CF393883 RTDS2_1_G06.g1_A021 Drought-stressed... 54 2e-005
gb|CF393886.1|CF393886 RTDS2_1_F11.g1_A021 Drought-stressed... 54 2e-005
gb|CF398899.1|CF398899 RTDS3_11_H09.b1_A022 Drought-stresse... 54 2e-005
gb|CF402528.1|CF402528 RTWW1_21_D01.b1_A015 Well-watered lo... 54 2e-005
gb|CF402626.1|CF402626 RTWW1_21_D01.g1_A015 Well-watered lo... 54 2e-005
gb|CF402812.1|CF402812 RTWW1_23_E10.b1_A015 Well-watered lo... 54 2e-005
gb|CF402920.1|CF402920 RTWW1_23_E10.g1_A015 Well-watered lo... 54 2e-005
gb|CF470510.1|CF470510 RTDS1_13_C08.b1_A015 Drought-stresse... 54 2e-005
gb|CF663933.1|CF663933 RTCNT1_6_C10.b1_A029 Root control Pi... 54 2e-005
gb|CF665976.1|CF665976 RTCNT1_19_G10.g1_A029 Root control P... 54 2e-005
gb|CF665986.1|CF665986 RTCNT1_20_A03.b1_A029 Root control P... 54 2e-005
gb|CF668350.1|CF668350 RTCNT1_36_A09.b1_A029 Root control P... 54 2e-005
gb|CF668432.1|CF668432 RTCNT1_36_A09.g1_A029 Root control P... 54 2e-005
gb|CF668906.1|CF668906 RTCNT1_39_H10.b1_A029 Root control P... 54 2e-005
gb|CF668995.1|CF668995 RTCNT1_39_H10.g1_A029 Root control P... 54 2e-005
gb|CF671301.1|CF671301 RTCNT1_56_D09.b1_A029 Root control P... 54 2e-005
gb|CF671372.1|CF671372 RTCNT1_56_D09.g1_A029 Root control P... 54 2e-005
gb|CF672700.1|CF672700 RTCNT1_73_H06.b1_A029 Root control P... 54 2e-005
gb|BX681068.1|BX681068 BX681068 RS Pinus pinaster cDNA clon... 54 2e-005
gb|CR393091.1|CR393091 CR393091 RN Pinus pinaster cDNA clon... 54 2e-005
gb|CO158632.1|CO158632 FLD1_8_E01.b1_A029 Root flooded Pinu... 54 2e-005
gb|CO160544.1|CO160544 FLD1_21_F06.g1_A029 Root flooded Pin... 54 2e-005
gb|CO163975.1|CO163975 FLD1_45_B05.b1_A029 Root flooded Pin... 54 2e-005
gb|CO165085.1|CO165085 FLD1_52_F08.b1_A029 Root flooded Pin... 54 2e-005
gb|CO167267.1|CO167267 FLD1_67_H10.g1_A029 Root flooded Pin... 54 2e-005
gb|CO167635.1|CO167635 FLD1_70_E03.b1_A029 Root flooded Pin... 54 2e-005
gb|CO167792.1|CO167792 FLD1_71_E11.b1_A029 Root flooded Pin... 54 2e-005
gb|CO167863.1|CO167863 FLD1_71_E11.g1_A029 Root flooded Pin... 54 2e-005
gb|CO200852.1|CO200852 RTCNT2_2_B04.b1_A029 Root control 2 ... 54 2e-005
gb|CO201193.1|CO201193 RTCNT2_4_E07.b1_A029 Root control 2 ... 54 2e-005
gb|CO370214.1|CO370214 RTK1_66_G02.b1_A029 Roots minus pota... 54 2e-005
gb|CV032397.1|CV032397 RTNACL1_7_G06.g2_A029 Roots plus add... 54 2e-005
gb|CV136191.1|CV136191 EST847400 Sequencing ESTs from loblo... 54 2e-005
gb|CV143704.1|CV143704 EST854913 Sequencing ESTs from loblo... 54 2e-005
gb|CX650820.1|CX650820 COLD1_48_G09.b1_A029 Root cold Pinus... 54 2e-005
gb|CX651417.1|CX651417 COLD1_52_F07.b1_A029 Root cold Pinus... 54 2e-005
gb|CX651491.1|CX651491 COLD1_52_F07.g1_A029 Root cold Pinus... 54 2e-005
gb|DN462584.1|DN462584 EST958383 Sequencing ESTs from loblo... 54 2e-005
gb|DR011539.1|DR011539 HEAT1_6_H03.b1_A029 Root at 37 C for... 54 2e-005
gb|DR011623.1|DR011623 HEAT1_6_H03.g1_A029 Root at 37 C for... 54 2e-005
gb|DR014058.1|DR014058 HEAT1_23_D09.b1_A029 Root at 37 C fo... 54 2e-005
gb|DR025585.1|DR025585 STRS1_72_B06.g1_A034 Shoot tip pitch... 54 2e-005
gb|DR049314.1|DR049314 RTBOR1_15_H04.b1_A029 Roots plus add... 54 2e-005
gb|DR049359.1|DR049359 RTBOR1_15_H04.g1_A029 Roots plus add... 54 2e-005
gb|DR060416.1|DR060416 RTNIT1_27_E05.g1_A029 Roots minus ni... 54 2e-005
gb|DR070580.1|DR070580 RTDK1_14_F01.b1_A029 Roots, dark Pin... 54 2e-005
gb|DR071830.1|DR071830 RTDK1_22_G12.b1_A029 Roots, dark Pin... 54 2e-005
gb|DR071910.1|DR071910 RTDK1_22_G12.g1_A029 Roots, dark Pin... 54 2e-005
gb|DR097821.1|DR097821 STRR1_37_F05.b1_A033 Stem Response R... 54 2e-005
gb|DR100891.1|DR100891 STRR1_69_C06.b1_A033 Stem Response R... 54 2e-005
gb|DR118296.1|DR118296 RTMG1_12_H11.b1_A029 Roots minus mag... 54 2e-005
gb|DR118751.1|DR118751 RTMG1_19_A05.b1_A029 Roots minus mag... 54 2e-005
gb|DR120380.1|DR120380 RTMG1_29_G10.b1_A029 Roots minus mag... 54 2e-005
gb|DR177887.1|DR177887 RTMNUT1_8_A12.b1_A029 Roots minus mi... 54 2e-005
gb|DR178758.1|DR178758 RTMNUT1_13_G02.g1_A029 Roots minus m... 54 2e-005
gb|DR693562.1|DR693562 EST1083651 Normalized pine embryo li... 54 2e-005
gb|DR742616.1|DR742616 RTCU1_5_H11.b2_A029 Roots plus added... 54 2e-005
gb|DR743712.1|DR743712 RTCU1_17_E09.g1_A029 Roots plus adde... 54 2e-005
gb|DT626537.1|DT626537 EST1158461 Sequencing ESTs from lobl... 54 2e-005
gb|DT624915.1|DT624915 EST1159190 Sequencing ESTs from lobl... 54 2e-005
gb|BX248788.1|BX248788 BX248788 Pinus pinaster differenciat... 50 3e-004
gb|CF472455.1|CF472455 RTDS1_9_H12.g1_A015 Drought-stressed... 50 3e-004
gb|CF392320.1|CF392320 RTDR3_7_B09.b1_A022 Loblolly pine ro... 48 0.001
gb|CF392425.1|CF392425 RTDR3_7_B09.g1_A022 Loblolly pine ro... 48 0.001
gb|CF393377.1|CF393377 RTDR3_20_F10.g1_A022 Loblolly pine r... 48 0.001
gb|CF393744.1|CF393744 RTDS2_1_F11.b1_A021 Drought-stressed... 48 0.001
gb|CF398001.1|CF398001 RTDS3_22_F03.b1_A022 Drought-stresse... 48 0.001
gb|CF472318.1|CF472318 RTDS1_9_H12.b1_A015 Drought-stressed... 48 0.001
gb|CF664002.1|CF664002 RTCNT1_6_C10.g1_A029 Root control Pi... 48 0.001
gb|CX650902.1|CX650902 COLD1_48_G09.g1_A029 Root cold Pinus... 48 0.001
gb|DR012016.1|DR012016 HEAT1_9_B08.g1_A029 Root at 37 C for... 48 0.001
gb|DR024026.1|DR024026 STRS1_61_F07.g1_A034 Shoot tip pitch... 48 0.001
gb|DR070649.1|DR070649 RTDK1_14_F01.g1_A029 Roots, dark Pin... 48 0.001
gb|DR387430.1|DR387430 RTHG1_21_E08.g2_A029 Roots plus adde... 48 0.001
gb|DR687672.1|DR687672 EST1077754 Normalized pine embryo li... 48 0.001
gb|DR742698.1|DR742698 RTCU1_5_H11.g2_A029 Roots plus added... 48 0.001
gb|CF386025.1|CF386025 RTDR1_7_H02.g1_A015 Loblolly pine ro... 44 0.020
gb|CF394599.1|CF394599 RTDS2_6_A01.g1_A021 Drought-stressed... 44 0.020
gb|CF397644.1|CF397644 RTDS3_4_D06.g1_A022 Drought-stressed... 44 0.020
gb|CF400435.1|CF400435 RTWW1_5_C12.g1_A015 Well-watered lob... 44 0.020
gb|CF401560.1|CF401560 RTWW1_13_C07.g1_A015 Well-watered lo... 44 0.020
gb|CF402022.1|CF402022 RTWW1_16_C02.g1_A015 Well-watered lo... 44 0.020
gb|CF402592.1|CF402592 RTWW1_21_C08.g1_A015 Well-watered lo... 44 0.020
gb|CF402904.1|CF402904 RTWW1_23_A07.g1_A015 Well-watered lo... 44 0.020
gb|CF475497.1|CF475497 RTWW2_12_G05.g1_A021 Well-watered lo... 44 0.020
gb|CF479183.1|CF479183 RTWW3_24_G03.g1_A022 Well-watered lo... 44 0.020
gb|CO170245.1|CO170245 NDL1_12_E03.g1_A029 Needles control ... 44 0.020
gb|CO170459.1|CO170459 NDL1_14_A01.g1_A029 Needles control ... 44 0.020
gb|CO175004.1|CO175004 NDL1_47_E08.g1_A029 Needles control ... 44 0.020
gb|CO365014.1|CO365014 RTK1_23_D06.b1_A029 Roots minus pota... 44 0.020
gb|CO365224.1|CO365224 RTK1_24_H11.b1_A029 Roots minus pota... 44 0.020
gb|CV033233.1|CV033233 RTNACL1_33_E06.b1_A029 Roots plus ad... 44 0.020
gb|DR069530.1|DR069530 RTDK1_7_F12.g1_A029 Roots, dark Pinu... 44 0.020
gb|DR093689.1|DR093689 STRR1_9_G02.g1_A033 Stem Response Re... 44 0.020
gb|DR094689.1|DR094689 STRR1_16_D07.b1_A033 Stem Response R... 44 0.020
gb|DR110730.1|DR110730 RTS1_12_C12.g1_A029 Roots minus sulf... 44 0.020
gb|DR118827.1|DR118827 RTMG1_19_A05.g1_A029 Roots minus mag... 44 0.020
gb|DR687137.1|DR687137 EST1077215 Normalized pine embryo li... 44 0.020
gb|DT634166.1|DT634166 EST1149097 Normalized pine embryo li... 44 0.020
gb|DT634371.1|DT634371 EST1149302 Normalized pine embryo li... 44 0.020
gb|BX250014.1|BX250014 BX250014 Pinus pinaster differenciat... 42 0.081
gb|BX250137.1|BX250137 BX250137 Pinus pinaster differenciat... 42 0.081
gb|BX253090.1|BX253090 BX253090 Pinus pinaster differenciat... 42 0.081
gb|BX254209.1|BX254209 BX254209 Pinus pinaster differenciat... 42 0.081
gb|BX254210.1|BX254210 BX254210 Pinus pinaster differenciat... 42 0.081
gb|CF389090.1|CF389090 RTDR2_13_E01.g1_A021 Loblolly pine r... 42 0.081
gb|CF391061.1|CF391061 RTDR3_3_G05.g1_A022 Loblolly pine ro... 42 0.081
gb|CF391723.1|CF391723 RTDR3_11_H08.g1_A022 Loblolly pine r... 42 0.081
gb|CF391882.1|CF391882 RTDR3_10_B12.g1_A022 Loblolly pine r... 42 0.081
gb|CF393742.1|CF393742 RTDS2_1_G06.b1_A021 Drought-stressed... 42 0.081
gb|CF398991.1|CF398991 RTDS3_11_H09.g1_A022 Drought-stresse... 42 0.081
gb|CF665907.1|CF665907 RTCNT1_19_G10.b1_A029 Root control P... 42 0.081
gb|CF666059.1|CF666059 RTCNT1_20_A03.g1_A029 Root control P... 42 0.081
gb|CF668985.1|CF668985 RTCNT1_39_G12.g1_A029 Root control P... 42 0.081
gb|BX676987.1|BX676987 BX676987 RN Pinus pinaster cDNA clon... 42 0.081
gb|BX678024.1|BX678024 BX678024 RN Pinus pinaster cDNA clon... 42 0.081
gb|BX678025.1|BX678025 BX678025 RN Pinus pinaster cDNA clon... 42 0.081
gb|BX678249.1|BX678249 BX678249 RN Pinus pinaster cDNA clon... 42 0.081
gb|CR393814.1|CR393814 CR393814 RN Pinus pinaster cDNA clon... 42 0.081
gb|CR394355.1|CR394355 CR394355 RN Pinus pinaster cDNA clon... 42 0.081
gb|CO160476.1|CO160476 FLD1_21_F06.b1_A029 Root flooded Pin... 42 0.081
gb|CO163181.1|CO163181 FLD1_40_B02.b1_A029 Root flooded Pin... 42 0.081
gb|CO163261.1|CO163261 FLD1_40_B02.g1_A029 Root flooded Pin... 42 0.081
gb|CO164051.1|CO164051 FLD1_45_B05.g1_A029 Root flooded Pin... 42 0.081
gb|CO167710.1|CO167710 FLD1_70_E03.g1_A029 Root flooded Pin... 42 0.081
gb|CO176188.1|CO176188 NDL1_60_H07.b1_A029 Needles control ... 42 0.081
gb|CO200926.1|CO200926 RTCNT2_2_B04.g1_A029 Root control 2 ... 42 0.081
gb|CO410536.1|CO410536 EST840921 Sequencing ESTs from loblo... 42 0.081
gb|CO413364.1|CO413364 EST843749 Sequencing ESTs from loblo... 42 0.081
gb|CO414386.1|CO414386 EST844771 Sequencing ESTs from loblo... 42 0.081
gb|CO370275.1|CO370275 RTK1_66_G02.g1_A029 Roots minus pota... 42 0.081
gb|CV034796.1|CV034796 RTNACL1_11_D10.g1_A029 Roots plus ad... 42 0.081
gb|CV035910.1|CV035910 RTNACL1_43_G04.b1_A029 Roots plus ad... 42 0.081
gb|CX652206.1|CX652206 COLD1_57_D09.g1_A029 Root cold Pinus... 42 0.081
gb|CX652372.1|CX652372 COLD1_58_D08.g1_A029 Root cold Pinus... 42 0.081
gb|CX716008.1|CX716008 RTPQ1_39_C01.g1_A032 Roots treated w... 42 0.081
gb|DN445836.1|DN445836 EST941635 Sequencing ESTs from loblo... 42 0.081
gb|DN448237.1|DN448237 EST944036 Sequencing ESTs from loblo... 42 0.081
gb|DN459373.1|DN459373 EST955172 Sequencing ESTs from loblo... 42 0.081
gb|DR177967.1|DR177967 RTMNUT1_8_A12.g1_A029 Roots minus mi... 42 0.081
gb|DR178680.1|DR178680 RTMNUT1_13_G02.b1_A029 Roots minus m... 42 0.081
gb|DR180992.1|DR180992 RTMNUT1_36_D01.b1_A029 Roots minus m... 42 0.081
gb|DR181072.1|DR181072 RTMNUT1_36_D01.g1_A029 Roots minus m... 42 0.081
gb|DR384682.1|DR384682 RTHG1_3_G09.g1_A029 Roots plus added... 42 0.081
gb|DT625518.1|DT625518 EST1157442 Sequencing ESTs from lobl... 42 0.081
gb|DT626040.1|DT626040 EST1157964 Sequencing ESTs from lobl... 42 0.081
gb|BX251747.1|BX251747 BX251747 Pinus pinaster differenciat... 40 0.32
gb|BQ695902.1|BQ695902 NXPV_034_A09_F NXPV (Nsf Xylem Plani... 40 0.32
gb|CF387290.1|CF387290 RTDR1_12_A02.b1_A015 Loblolly pine r... 40 0.32
gb|CF399928.1|CF399928 RTWW1_2_H04.b1_A015 Well-watered lob... 40 0.32
gb|CF402207.1|CF402207 RTWW1_19_D06.b1_A015 Well-watered lo... 40 0.32
gb|CF669313.1|CF669313 RTCNT1_42_G05.b1_A029 Root control P... 40 0.32
gb|CO166379.1|CO166379 FLD1_61_C04.g1_A029 Root flooded Pin... 40 0.32
gb|CX713516.1|CX713516 RTPQ1_10_D02.b1_A032 Roots treated w... 40 0.32
gb|CX713517.1|CX713517 RTPQ1_10_D03.b1_A032 Roots treated w... 40 0.32
>gb|AW985104.1|AW985104 NXNV_133_A03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_133_A03 5' similar to Arabidopsis thaliana sequence
At5g43060 cysteine protease component of
protease-inhibitor complex see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 506
Score = 87.7 bits (44), Expect = 2e-015
Identities = 112/134 (83%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 1090 cccttgtaagggtaatccttctcggtgtcgattccgccattgttgatgatgaactcaaac 1149
||||||||||| ||||| || ||| |||| || || | |||||| |||||||| |||||
Sbjct: 331 cccttgtaaggataatctttgtcgctgtcaatacctcgattgtttatgatgaattcaaaa 272
Query: 1150 gcatagtccatcagacctccattgcacccctgattgtaccgaagtgtcacagtcgacaag 1209
|||||||||||| || |||||||| ||||| ||||| |||||||||||||| || |
Sbjct: 271 gcatagtccatcnngccaccattgcatccctggttgta-agaagtgtcacagtccaccaa 213
Query: 1210 ctcttgttcagaca 1223
||||||||||||||
Sbjct: 212 ctcttgttcagaca 199
>gb|CO199518.1|CO199518 GEO2_1_F10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_F10_A032 5', mRNA sequence
Length = 809
Score = 73.8 bits (37), Expect = 2e-011
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 506 gggcagcagctgtagtgatcatcacagcaggtggccgaatcaagagggcagcagccccag 565
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 566 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 625
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 626 taatagttgtcacacac 642
>gb|CO199449.1|CO199449 GEO2_1_F10.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_F10_A032 3', mRNA sequence
Length = 890
Score = 71.9 bits (36), Expect = 9e-011
Identities = 111/136 (81%)
Strand = Plus / Plus
Query: 518 ggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccagg 577
||||||||||||||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 1 ggcagcagctgtagtgatcatcacagcaggtggccgaatcaagagggcagcagccccagg 60
Query: 578 cgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgagt 637
| ||||||| ||| | || || ||||||||||||||| |||| | |||||| || |
Sbjct: 61 catagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaat 120
Query: 638 agtagttgtcgcacac 653
| |||||||| |||||
Sbjct: 121 aatagttgtcacacac 136
>gb|AL751298.1|AL751298 AL751298 RS Pinus pinaster cDNA clone RS07C05 similar to CYSTEINE
PROTEASE, mRNA sequence
Length = 687
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || ||||||||||| || || |||||||| ||||||
Sbjct: 285 gggcagcagctgtagtgatcatcacagcaggtggccgaatcaagagggcagcaaccccag 226
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 225 gcatagcagtaacctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 166
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 165 taatagttgtcacacac 149
>gb|BX252311.1|BX252311 BX252311 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP062G03 similar to CYSTEINE PROTEINASE
PRECURSOR, mRNA sequence
Length = 716
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || ||||||||||| || || |||||||| ||||||
Sbjct: 600 gggcagcagctgtagtgatcatcacagcaggtggccgaatcaagagggcagcaaccccag 541
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 540 gcatagcagtaacctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 481
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 480 taatagttgtcacacac 464
>gb|AW985324.1|AW985324 NXNV_135_H04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_135_H04 5' similar to Arabidopsis thaliana
sequence At1g47128 cysteine proteinase RD21A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 533
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 194 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 135
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 134 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 75
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 74 taatagttgtcacacac 58
>gb|BE458111.1|BE458111 NXCI_008_F07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_008_F07 5' similar to Arabidopsis
thaliana sequence At1g47128 cysteine proteinase RD21A
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 477
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 229 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 170
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 169 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 110
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 109 taatagttgtcacacac 93
>gb|BM428592.1|BM428592 NXRV_019_A07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_019_A07 5' similar to Arabidopsis thaliana
sequence At1g47128 cysteine proteinase RD21A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 383
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 295 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 236
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 235 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 176
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 175 taatagttgtcacacac 159
>gb|CF398375.1|CF398375 RTDS3_12_E06.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_E06_A022 3', mRNA sequence
Length = 635
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 164 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 105
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 104 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 45
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 44 taatagttgtcacacac 28
>gb|CF398437.1|CF398437 RTDS3_12_E06.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_E06_A022 5', mRNA sequence
Length = 605
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 516 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 457
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 456 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 397
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 396 taatagttgtcacacac 380
>gb|CF471990.1|CF471990 RTDS1_7_G03.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_7_G03_A015 5', mRNA sequence
Length = 792
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 784 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 725
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 724 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 665
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 664 taatagttgtcacacac 648
>gb|BX682808.1|BX682808 BX682808 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122B11 similar to Cysteine proteinase, mRNA
sequence
Length = 668
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || ||||||||||| || || |||||||| ||||||
Sbjct: 231 gggcagcagctgtagtgatcatcacagcaggtggccgaatcaagagggcagcaaccccag 172
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 171 gcatagcagtaacctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 112
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 111 taatagttgtcacacac 95
>gb|CO165091.1|CO165091 FLD1_52_G05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_G05_A029 3', mRNA sequence
Length = 842
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 290 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 231
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 230 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 171
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 170 taatagttgtcacacac 154
>gb|CO165167.1|CO165167 FLD1_52_G05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_G05_A029 5', mRNA sequence
Length = 820
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 663 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 604
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 603 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 544
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 543 taatagttgtcacacac 527
>gb|CO167274.1|CO167274 FLD1_68_A07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_A07_A029 3', mRNA sequence
Length = 805
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 253 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 194
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 193 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 134
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 133 taatagttgtcacacac 117
>gb|CO167354.1|CO167354 FLD1_68_A07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_A07_A029 5', mRNA sequence
Length = 851
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 448 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 389
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 388 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 329
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 328 taatagttgtcacacac 312
>gb|CO171100.1|CO171100 NDL1_19_B11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_19_B11_A029 3', mRNA sequence
Length = 670
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 138 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 79
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 78 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 19
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 18 taatagttgtcacacac 2
>gb|CO171152.1|CO171152 NDL1_19_B11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_19_B11_A029 5', mRNA sequence
Length = 722
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 241 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 182
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 181 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 122
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 121 taatagttgtcacacac 105
>gb|CO198528.1|CO198528 GEO1_14_H05.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_14_H05_A029 3', mRNA sequence
Length = 685
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 151 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 92
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 91 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 32
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 31 taatagttgtcacacac 15
>gb|CO201321.1|CO201321 RTCNT2_5_B04.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_5_B04_A029 3', mRNA sequence
Length = 661
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 156 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 97
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 96 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 37
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 36 taatagttgtcacacac 20
>gb|CO364426.1|CO364426 RTK1_15_D07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D07_A029 5', mRNA sequence
Length = 891
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 585 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 526
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 525 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 466
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 465 taatagttgtcacacac 449
>gb|CO369007.1|CO369007 RTK1_44_G12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_G12_A029 3', mRNA sequence
Length = 806
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 255 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 196
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 195 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 136
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 135 taatagttgtcacacac 119
>gb|CX712540.1|CX712540 RTPQ1_3_D08.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_D08_A032 3', mRNA sequence
Length = 709
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 157 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 98
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 97 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 38
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 37 taatagttgtcacacac 21
>gb|CX712619.1|CX712619 RTPQ1_3_D08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_D08_A032 5', mRNA sequence
Length = 835
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 361 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 302
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 301 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 242
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 241 taatagttgtcacacac 225
>gb|CX714844.1|CX714844 RTPQ1_27_B02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_27_B02_A032 5', mRNA sequence
Length = 725
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 548 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 489
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 488 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 429
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 428 taatagttgtcacacac 412
>gb|DR012805.1|DR012805 HEAT1_15_D05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_D05_A029 3', mRNA sequence
Length = 758
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 208 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 149
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 148 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 89
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 88 taatagttgtcacacac 72
>gb|DR013603.1|DR013603 HEAT1_20_G08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_G08_A029 3', mRNA sequence
Length = 747
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 243 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 184
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 183 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 124
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 123 taatagttgtcacacac 107
>gb|DR015048.1|DR015048 STRS1_1_E04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_E04_A034 3', mRNA sequence
Length = 716
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 164 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 105
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 104 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 45
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 44 taatagttgtcacacac 28
>gb|DR017559.1|DR017559 STRS1_17_C06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_C06_A034 3', mRNA sequence
Length = 702
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 151 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 92
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 91 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 32
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 31 taatagttgtcacacac 15
>gb|DR017640.1|DR017640 STRS1_17_C06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_C06_A034 5', mRNA sequence
Length = 666
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 377 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 318
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 317 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 258
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 257 taatagttgtcacacac 241
>gb|DR020619.1|DR020619 STRS1_38_E06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_E06_A034 3', mRNA sequence
Length = 839
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 287 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 228
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 227 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 168
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 167 taatagttgtcacacac 151
>gb|DR020694.1|DR020694 STRS1_38_E06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_E06_A034 5', mRNA sequence
Length = 679
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 411 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 352
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 351 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 292
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 291 taatagttgtcacacac 275
>gb|DR022761.1|DR022761 STRS1_53_G05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_53_G05_A034 3', mRNA sequence
Length = 635
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 340 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 399
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 400 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 459
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 460 taatagttgtcacacac 476
>gb|DR022838.1|DR022838 STRS1_53_G05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_53_G05_A034 5', mRNA sequence
Length = 724
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 517 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 576
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 577 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 636
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 637 taatagttgtcacacac 653
>gb|DR023668.1|DR023668 STRS1_59_F05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_59_F05_A034 3', mRNA sequence
Length = 849
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 299 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 240
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 239 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 180
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 179 taatagttgtcacacac 163
>gb|DR050120.1|DR050120 RTBOR1_21_H12.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H12_A029 3', mRNA sequence
Length = 782
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 234 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 175
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 174 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 115
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 114 taatagttgtcacacac 98
>gb|DR059638.1|DR059638 RTNIT1_18_G11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_18_G11_A029 5', mRNA sequence
Length = 861
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 506 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 565
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 566 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 625
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 626 taatagttgtcacacac 642
>gb|DR070564.1|DR070564 RTDK1_14_D03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_14_D03_A029 3', mRNA sequence
Length = 828
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 297 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 238
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 237 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 178
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 177 taatagttgtcacacac 161
>gb|DR093933.1|DR093933 STRR1_11_H02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_11_H02_A033 3', mRNA sequence
Length = 716
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 164 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 105
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 104 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 45
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 44 taatagttgtcacacac 28
>gb|DR177175.1|DR177175 RTMNUT1_3_C10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_C10_A029 5', mRNA sequence
Length = 733
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 536 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 477
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 476 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 417
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 416 taatagttgtcacacac 400
>gb|DR178812.1|DR178812 RTMNUT1_14_D10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_D10_A029 3', mRNA sequence
Length = 860
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 309 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 250
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 249 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 190
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 189 taatagttgtcacacac 173
>gb|DR178895.1|DR178895 RTMNUT1_14_D10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_D10_A029 5', mRNA sequence
Length = 731
Score = 65.9 bits (33), Expect = 6e-009
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 495 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 436
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 435 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 376
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 375 taatagttgtcacacac 359
>gb|BE123631.1|BE123631 NXNV_150_A07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_150_A07 5' similar to Arabidopsis thaliana
sequence At1g47128 cysteine proteinase RD21A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 309
Score = 61.9 bits (31), Expect = 9e-008
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || ||||||| || || || |||||||||||||||
Sbjct: 194 gggcagcagctgtagtgatcatcnnagcaggtagccgaatcaagagggcagcagccccag 135
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 134 gcatagcagtagcctccgaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 75
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 74 taatagttgtcacacac 58
>gb|BM428593.1|BM428593 NXRV_019_A08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_019_A08 5' similar to Arabidopsis thaliana
sequence At1g47128 cysteine proteinase RD21A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 308
Score = 58.0 bits (29), Expect = 1e-006
Identities = 108/137 (78%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| | || || |||||||||||||||
Sbjct: 295 gggcagcagctgtagtgatcatcacagcaggtagnnnaatcaagagggcagcagccccag 236
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| | | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 235 gcatagcagtagnnnnngaagtcatacatgcagcagcaggtgttgctctgagggcaggaa 176
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 175 taatagttgtcacacac 159
>gb|CO160935.1|CO160935 FLD1_25_C05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_25_C05_A029 5', mRNA sequence
Length = 832
Score = 58.0 bits (29), Expect = 1e-006
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 519 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 578
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || |||||||| |||||| |||| | |||||| ||
Sbjct: 579 gcatagcagtagcctccgaagtcatacatgcagcaacaggtgttgctctgagggcaggaa 638
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 639 taatagttgtcacacac 655
>gb|DR177099.1|DR177099 RTMNUT1_3_C10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_C10_A029 3', mRNA sequence
Length = 689
Score = 58.0 bits (29), Expect = 1e-006
Identities = 111/137 (81%), Gaps = 1/137 (0%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 137 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 78
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| ||| | || || ||||||||||||||| |||| | |||||| ||
Sbjct: 77 gcatagcagtagcctccgaagtc-tacatgcagcagcaggtgttgctctgagggcaggaa 19
Query: 637 tagtagttgtcgcacac 653
|| |||||||| |||||
Sbjct: 18 taatagttgtcacacac 2
>gb|AW010129.1|AW010129 ST02C10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST02C10, mRNA sequence
Length = 477
Score = 54.0 bits (27), Expect = 2e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 102 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 43
Query: 577 gcgaagcagta 587
|| |||||||
Sbjct: 42 gcatagcagta 32
>gb|BQ699231.1|BQ699231 NXRV121_B03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_B03 5' similar to Arabidopsis thaliana
sequence At1g47128 cysteine proteinase RD21A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 485
Score = 54.0 bits (27), Expect = 2e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct: 248 gggcagcagctgtagtgatcatcacagcaggtagccgaatcaagagggcagcagccccag 189
Query: 577 gcgaagcagta 587
|| |||||||
Sbjct: 188 gcatagcagta 178
>gb|CF385673.1|CF385673 RTDR1_5_B07.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_5_B07_A015 5', mRNA
sequence
Length = 707
Score = 54.0 bits (27), Expect = 2e-005
Identities = 111/139 (79%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||| |||||||||||||||||||| ||||| | ||| |||||||| |||||
Sbjct: 588 gggcagcaactgtagtgatcgtcgcagcatgtggcagagttgagagggcagcaaccccat 529
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| || | || || ||||||||||||||| |||| || ||||| ||
Sbjct: 528 gcatagcagtagcctccaaagtcatacatgcagcagcaggtgttgctctccgggcaggaa 469
Query: 637 tagtagttgtcgcacacgg 655
|||||||| || |||||||
Sbjct: 468 tagtagttatcacacacgg 450
>gb|CF390361.1|CF390361 RTDR2_19_H08.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_H08_A021 3', mRNA
sequence
Length = 617
Score = 54.0 bits (27), Expect = 2e-005
Identities = 111/139 (79%)
Strand = Plus / Minus
Query: 517 gggcagcagctgtagtgatcgtcgcagcaggtggcgccctcgagcgggcagcagccccag 576
|||||||| |||||||||||||||||||| ||||| | ||| |||||||| |||||
Sbjct: 157 gggcagcaactgtagtgatcgtcgcagcatgtggcagagttgagagggcagcaaccccat 98
Query: 577 gcgaagcagtacttgccgtactcgtagatgcagcagcaggtggtgctgtcagggcacgag 636
|| ||||||| || | || || ||||||||||||||| |||| || ||||| ||
Sbjct: 97 gcatagcagtagcctccaaagtcatacatgcagcagcaggtgttgctctccgggcaggaa 38
Query: 637 tagtagttgtcgcacacgg 655
|||||||| || |||||||
Sbjct: 37 tagtagttatcacacacgg 19
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 222,854
Number of Sequences: 355925
Number of extensions: 222854
Number of successful extensions: 73157
Number of sequences better than 0.5: 210
Number of HSP's better than 0.5 without gapping: 209
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72416
Number of HSP's gapped (non-prelim): 670
length of query: 1862
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1842
effective length of database: 210,158,737
effective search space: 387112393554
effective search space used: 387112393554
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)