BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521462.2.2
(1311 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG039333.1|BG039333 NXSI_097_H05_F NXSI (Nsf Xylem Side ... 135 5e-030
gb|BG317931.1|BG317931 NXPV_007_D11_F NXPV (Nsf Xylem Plani... 135 5e-030
gb|BG317951.1|BG317951 NXPV_007_G05_F NXPV (Nsf Xylem Plani... 135 5e-030
gb|BG318137.1|BG318137 NXPV_010_H05_F NXPV (Nsf Xylem Plani... 135 5e-030
gb|BQ698130.1|BQ698130 NXPV_064_H04_F NXPV (Nsf Xylem Plani... 135 5e-030
gb|CF389668.1|CF389668 RTDR2_8_D04.g1_A021 Loblolly pine ro... 135 5e-030
gb|CF401229.1|CF401229 RTWW1_11_G01.b1_A015 Well-watered lo... 135 5e-030
gb|CF401717.1|CF401717 RTWW1_14_C08.g1_A015 Well-watered lo... 135 5e-030
gb|CF402018.1|CF402018 RTWW1_16_A09.g1_A015 Well-watered lo... 135 5e-030
gb|CF402602.1|CF402602 RTWW1_21_D11.g1_A015 Well-watered lo... 135 5e-030
gb|CF402933.1|CF402933 RTWW1_23_G02.g1_A015 Well-watered lo... 135 5e-030
gb|CN784761.1|CN784761 EST783452 Sequencing ESTs from loblo... 135 5e-030
gb|CN784778.1|CN784778 EST783469 Sequencing ESTs from loblo... 135 5e-030
gb|CO159784.1|CO159784 FLD1_15_H03.g1_A029 Root flooded Pin... 135 5e-030
gb|CO163029.1|CO163029 FLD1_39_B07.b1_A029 Root flooded Pin... 135 5e-030
gb|CO163108.1|CO163108 FLD1_39_B07.g1_A029 Root flooded Pin... 135 5e-030
gb|CO176699.1|CO176699 NDL1_63_D10.g1_A029 Needles control ... 135 5e-030
gb|CO409013.1|CO409013 EST839398 Sequencing ESTs from loblo... 135 5e-030
gb|CO414085.1|CO414085 EST844470 Sequencing ESTs from loblo... 135 5e-030
gb|CV137468.1|CV137468 EST848677 Sequencing ESTs from loblo... 135 5e-030
gb|CV146400.1|CV146400 EST857609 Sequencing ESTs from loblo... 135 5e-030
gb|CV146771.1|CV146771 EST857980 Sequencing ESTs from loblo... 135 5e-030
gb|CX649065.1|CX649065 COLD1_32_F03.g1_A029 Root cold Pinus... 135 5e-030
gb|DN453630.1|DN453630 EST949429 Sequencing ESTs from loblo... 135 5e-030
gb|DN454863.1|DN454863 EST950662 Sequencing ESTs from loblo... 135 5e-030
gb|DN458835.1|DN458835 EST954634 Sequencing ESTs from loblo... 135 5e-030
gb|DR012793.1|DR012793 HEAT1_15_C04.b1_A029 Root at 37 C fo... 135 5e-030
gb|DR012876.1|DR012876 HEAT1_15_C04.g1_A029 Root at 37 C fo... 135 5e-030
gb|DR016530.1|DR016530 STRS1_10_E01.g1_A034 Shoot tip pitch... 135 5e-030
gb|DR020451.1|DR020451 STRS1_37_C11.b1_A034 Shoot tip pitch... 135 5e-030
gb|DR020527.1|DR020527 STRS1_37_C11.g1_A034 Shoot tip pitch... 135 5e-030
gb|DR071853.1|DR071853 RTDK1_22_B04.g1_A029 Roots, dark Pin... 135 5e-030
gb|DR093869.1|DR093869 STRR1_10_H08.g1_A033 Stem Response R... 135 5e-030
gb|DR120870.1|DR120870 RTMG1_32_B05.g1_A029 Roots minus mag... 135 5e-030
gb|DR693530.1|DR693530 EST1083618 Normalized pine embryo li... 135 5e-030
gb|DT625596.1|DT625596 EST1157520 Sequencing ESTs from lobl... 135 5e-030
gb|DT631216.1|DT631216 EST1146147 Normalized pine embryo li... 133 2e-029
gb|CF398489.1|CF398489 RTDS3_15_F05.b1_A022 Drought-stresse... 131 8e-029
gb|CF398158.1|CF398158 RTDS3_21_F07.g1_A022 Drought-stresse... 127 1e-027
gb|CV147831.1|CV147831 EST859040 Sequencing ESTs from loblo... 127 1e-027
gb|DR387294.1|DR387294 RTHG1_20_F12.g1_A029 Roots plus adde... 127 1e-027
gb|DR684083.1|DR684083 EST1074160 Normalized pine embryo li... 127 1e-027
gb|CF400393.1|CF400393 RTWW1_5_E07.b1_A015 Well-watered lob... 117 1e-024
gb|BQ696960.1|BQ696960 NXPV_047_D03_F NXPV (Nsf Xylem Plani... 111 7e-023
gb|BE241217.1|BE241217 NXNV_180_E12_F Nsf Xylem Normal wood... 101 7e-020
gb|DR682722.1|DR682722 EST1072797 Normalized pine embryo li... 100 3e-019
gb|CF398111.1|CF398111 RTDS3_21_F07.b1_A022 Drought-stresse... 96 4e-018
gb|CO159714.1|CO159714 FLD1_15_H03.b1_A029 Root flooded Pin... 96 4e-018
gb|DR017539.1|DR017539 STRS1_17_A01.b1_A034 Shoot tip pitch... 96 4e-018
gb|DR093781.1|DR093781 STRR1_10_H08.b1_A033 Stem Response R... 96 4e-018
gb|BG275719.1|BG275719 NXSI_145_A05_F NXSI (Nsf Xylem Side ... 92 7e-017
gb|CF402516.1|CF402516 RTWW1_21_D11.b1_A015 Well-watered lo... 86 4e-015
gb|DR091932.1|DR091932 RTAL1_25_A05.b1_A029 Roots plus adde... 86 4e-015
gb|DR691152.1|DR691152 EST1081238 Normalized pine embryo li... 84 2e-014
gb|BM428463.1|BM428463 NXRV_016_H11_F NXRV (Nsf Xylem Root ... 76 4e-012
gb|CO162832.1|CO162832 FLD1_37_F11.g1_A029 Root flooded Pin... 76 4e-012
gb|DR093692.1|DR093692 STRR1_9_G05.g1_A033 Stem Response Re... 76 4e-012
gb|DR688636.1|DR688636 EST1078721 Normalized pine embryo li... 76 4e-012
gb|DR692348.1|DR692348 EST1082436 Normalized pine embryo li... 76 4e-012
gb|DT637220.1|DT637220 EST1152151 Normalized pine embryo li... 76 4e-012
gb|DN615294.1|DN615294 EST968344 Subtracted pine embryo lib... 72 6e-011
gb|DR053493.1|DR053493 RTCA1_11_B08.g1_A029 Roots minus cal... 68 1e-009
gb|DR024929.1|DR024929 STRS1_68_A09.g1_A034 Shoot tip pitch... 58 1e-006
gb|CV138803.1|CV138803 EST850012 Sequencing ESTs from loblo... 48 0.001
gb|DR684847.1|DR684847 EST1074924 Normalized pine embryo li... 42 0.057
gb|DR685606.1|DR685606 EST1075683 Normalized pine embryo li... 42 0.057
gb|DT632279.1|DT632279 EST1147210 Normalized pine embryo li... 42 0.057
gb|DT633058.1|DT633058 EST1147989 Normalized pine embryo li... 42 0.057
gb|CF471631.1|CF471631 RTDS1_4_B06.g1_A015 Drought-stressed... 40 0.22
>gb|BG039333.1|BG039333 NXSI_097_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_097_H05 5' similar to Arabidopsis thaliana
sequence At2g44680 putative casein kinase II beta
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 536
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 12 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 71
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 72 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 131
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 132 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 191
Query: 601 ttagatgt 608
|| |||||
Sbjct: 192 ttggatgt 199
>gb|BG317931.1|BG317931 NXPV_007_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_007_D11 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 577
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 86 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 145
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 146 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 205
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 206 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 265
Query: 601 ttagatgt 608
|| |||||
Sbjct: 266 ttggatgt 273
>gb|BG317951.1|BG317951 NXPV_007_G05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_007_G05 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 550
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 86 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 145
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 146 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 205
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 206 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 265
Query: 601 ttagatgt 608
|| |||||
Sbjct: 266 ttggatgt 273
>gb|BG318137.1|BG318137 NXPV_010_H05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_H05 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 557
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 86 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 145
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 146 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 205
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 206 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 265
Query: 601 ttagatgt 608
|| |||||
Sbjct: 266 ttggatgt 273
>gb|BQ698130.1|BQ698130 NXPV_064_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_064_H04 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 512
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 86 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 145
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 146 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 205
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 206 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 265
Query: 601 ttagatgt 608
|| |||||
Sbjct: 266 ttggatgt 273
>gb|CF389668.1|CF389668 RTDR2_8_D04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_D04_A021 5', mRNA
sequence
Length = 630
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 408 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 467
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 468 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 527
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 528 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 587
Query: 601 ttagatgt 608
|| |||||
Sbjct: 588 ttggatgt 595
>gb|CF401229.1|CF401229 RTWW1_11_G01.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_G01_A015 3', mRNA sequence
Length = 320
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Minus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 216 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 157
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 156 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 97
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 96 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 37
Query: 601 ttagatgt 608
|| |||||
Sbjct: 36 ttggatgt 29
>gb|CF401717.1|CF401717 RTWW1_14_C08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C08_A015 5', mRNA sequence
Length = 847
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 198 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 257
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 258 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 317
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 318 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 377
Query: 601 ttagatgt 608
|| |||||
Sbjct: 378 ttggatgt 385
>gb|CF402018.1|CF402018 RTWW1_16_A09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_A09_A015 5', mRNA sequence
Length = 760
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 93 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 152
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 153 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 212
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 213 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 272
Query: 601 ttagatgt 608
|| |||||
Sbjct: 273 ttggatgt 280
>gb|CF402602.1|CF402602 RTWW1_21_D11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_D11_A015 5', mRNA sequence
Length = 726
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 511 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 570
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 571 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 630
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 631 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 690
Query: 601 ttagatgt 608
|| |||||
Sbjct: 691 ttggatgt 698
>gb|CF402933.1|CF402933 RTWW1_23_G02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_23_G02_A015 5', mRNA sequence
Length = 517
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 103 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 162
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 163 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 222
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 223 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 282
Query: 601 ttagatgt 608
|| |||||
Sbjct: 283 ttggatgt 290
>gb|CN784761.1|CN784761 EST783452 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAQ21 5' end, mRNA sequence
Length = 889
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 229 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 288
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 289 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 348
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 349 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 408
Query: 601 ttagatgt 608
|| |||||
Sbjct: 409 ttggatgt 416
>gb|CN784778.1|CN784778 EST783469 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAQ44 5' end, mRNA sequence
Length = 909
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 343 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 402
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 403 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 462
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 463 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 522
Query: 601 ttagatgt 608
|| |||||
Sbjct: 523 ttggatgt 530
>gb|CO159784.1|CO159784 FLD1_15_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_H03_A029 5', mRNA sequence
Length = 821
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 249 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 308
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 309 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 368
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 369 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 428
Query: 601 ttagatgt 608
|| |||||
Sbjct: 429 ttggatgt 436
>gb|CO163029.1|CO163029 FLD1_39_B07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_B07_A029 3', mRNA sequence
Length = 861
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 63 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 122
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 123 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 182
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 183 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 242
Query: 601 ttagatgt 608
|| |||||
Sbjct: 243 ttggatgt 250
>gb|CO163108.1|CO163108 FLD1_39_B07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_B07_A029 5', mRNA sequence
Length = 888
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 215 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 274
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 275 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 334
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 335 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 394
Query: 601 ttagatgt 608
|| |||||
Sbjct: 395 ttggatgt 402
>gb|CO176699.1|CO176699 NDL1_63_D10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_63_D10_A029 5', mRNA sequence
Length = 781
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 484 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 543
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 544 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 603
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 604 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 663
Query: 601 ttagatgt 608
|| |||||
Sbjct: 664 ttggatgt 671
>gb|CO409013.1|CO409013 EST839398 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKK24 5' end, mRNA sequence
Length = 958
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 522 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 581
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 582 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 641
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 642 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 701
Query: 601 ttagatgt 608
|| |||||
Sbjct: 702 ttggatgt 709
>gb|CO414085.1|CO414085 EST844470 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMJ59 5' end, mRNA sequence
Length = 760
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 522 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 581
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 582 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 641
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 642 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 701
Query: 601 ttagatgt 608
|| |||||
Sbjct: 702 ttggatgt 709
>gb|CV137468.1|CV137468 EST848677 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAO87 5' end, mRNA sequence
Length = 850
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 383 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 442
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 443 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 502
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 503 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 562
Query: 601 ttagatgt 608
|| |||||
Sbjct: 563 ttggatgt 570
>gb|CV146400.1|CV146400 EST857609 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDV92 5' end, mRNA sequence
Length = 863
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 543 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 602
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 603 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 662
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 663 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 722
Query: 601 ttagatgt 608
|| |||||
Sbjct: 723 ttggatgt 730
>gb|CV146771.1|CV146771 EST857980 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIE012 5' end, mRNA sequence
Length = 853
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 529 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 588
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 589 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 648
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 649 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 708
Query: 601 ttagatgt 608
|| |||||
Sbjct: 709 ttggatgt 716
>gb|CX649065.1|CX649065 COLD1_32_F03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_32_F03_A029 5', mRNA sequence
Length = 766
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 29 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 88
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 89 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 148
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 149 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 208
Query: 601 ttagatgt 608
|| |||||
Sbjct: 209 ttggatgt 216
>gb|DN453630.1|DN453630 EST949429 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFU82 5' end, mRNA sequence
Length = 852
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 341 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 400
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 401 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 460
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 461 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 520
Query: 601 ttagatgt 608
|| |||||
Sbjct: 521 ttggatgt 528
>gb|DN454863.1|DN454863 EST950662 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG814 5' end, mRNA sequence
Length = 782
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 542 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 601
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 602 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 661
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 662 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 721
Query: 601 ttagatgt 608
|| |||||
Sbjct: 722 ttggatgt 729
>gb|DN458835.1|DN458835 EST954634 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHG33 5' end, mRNA sequence
Length = 948
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 476 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 535
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 536 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 595
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 596 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 655
Query: 601 ttagatgt 608
|| |||||
Sbjct: 656 ttggatgt 663
>gb|DR012793.1|DR012793 HEAT1_15_C04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_C04_A029 3', mRNA sequence
Length = 784
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 71 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 130
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 131 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 190
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 191 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 250
Query: 601 ttagatgt 608
|| |||||
Sbjct: 251 ttggatgt 258
>gb|DR012876.1|DR012876 HEAT1_15_C04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_C04_A029 5', mRNA sequence
Length = 775
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 129 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 188
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 189 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 248
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 249 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 308
Query: 601 ttagatgt 608
|| |||||
Sbjct: 309 ttggatgt 316
>gb|DR016530.1|DR016530 STRS1_10_E01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_10_E01_A034 5', mRNA sequence
Length = 798
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 515 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 574
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 575 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 634
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 635 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 694
Query: 601 ttagatgt 608
|| |||||
Sbjct: 695 ttggatgt 702
>gb|DR020451.1|DR020451 STRS1_37_C11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_C11_A034 3', mRNA sequence
Length = 856
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Minus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 699 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 640
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 639 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 580
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 579 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 520
Query: 601 ttagatgt 608
|| |||||
Sbjct: 519 ttggatgt 512
>gb|DR020527.1|DR020527 STRS1_37_C11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_C11_A034 5', mRNA sequence
Length = 755
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Minus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 677 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 618
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 617 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 558
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 557 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 498
Query: 601 ttagatgt 608
|| |||||
Sbjct: 497 ttggatgt 490
>gb|DR071853.1|DR071853 RTDK1_22_B04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_B04_A029 5', mRNA sequence
Length = 775
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Minus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 728 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 669
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 668 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 609
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 608 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 549
Query: 601 ttagatgt 608
|| |||||
Sbjct: 548 ttggatgt 541
>gb|DR093869.1|DR093869 STRR1_10_H08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_H08_A033 5', mRNA sequence
Length = 845
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 196 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 255
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 256 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 315
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 316 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 375
Query: 601 ttagatgt 608
|| |||||
Sbjct: 376 ttggatgt 383
>gb|DR120870.1|DR120870 RTMG1_32_B05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_B05_A029 5', mRNA sequence
Length = 848
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 99 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 158
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 159 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 218
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 219 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 278
Query: 601 ttagatgt 608
|| |||||
Sbjct: 279 ttggatgt 286
>gb|DR693530.1|DR693530 EST1083618 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE050 3' end, mRNA sequence
Length = 749
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 511 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 570
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 571 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 630
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 631 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 690
Query: 601 ttagatgt 608
|| |||||
Sbjct: 691 ttggatgt 698
>gb|DT625596.1|DT625596 EST1157520 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA165 5' end, mRNA sequence
Length = 849
Score = 135 bits (68), Expect = 5e-030
Identities = 158/188 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 522 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 581
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 582 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 641
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 642 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 701
Query: 601 ttagatgt 608
|| |||||
Sbjct: 702 ttggatgt 709
>gb|DT631216.1|DT631216 EST1146147 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF629 3' end, mRNA sequence
Length = 822
Score = 133 bits (67), Expect = 2e-029
Identities = 151/179 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 633 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 692
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 693 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 752
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgat 599
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 753 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgat 811
>gb|CF398489.1|CF398489 RTDS3_15_F05.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_15_F05_A022 3', mRNA sequence
Length = 668
Score = 131 bits (66), Expect = 8e-029
Identities = 150/178 (84%)
Strand = Plus / Minus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 178 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 119
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 118 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 59
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctga 598
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| ||||
Sbjct: 58 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctga 1
>gb|CF398158.1|CF398158 RTDS3_21_F07.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_F07_A022 5', mRNA sequence
Length = 406
Score = 127 bits (64), Expect = 1e-027
Identities = 157/188 (83%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| | ||||||||||| || || || || ||||| || ||||||
Sbjct: 183 agcgaagaatcagatgtcaccggttctgatggagatgacacatcctggatctcttggttc 242
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 243 tgtactttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 302
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 303 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 362
Query: 601 ttagatgt 608
|| |||||
Sbjct: 363 ttggatgt 370
>gb|CV147831.1|CV147831 EST859040 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEB58 5' end, mRNA sequence
Length = 931
Score = 127 bits (64), Expect = 1e-027
Identities = 157/188 (83%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 362 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 421
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||| | ||||||||||| ||||| || ||||||
Sbjct: 422 tgtaatttaagaggcaatgagttcttttgtaaagttgatgatgagtacattcaggatgat 481
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 482 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 541
Query: 601 ttagatgt 608
|| |||||
Sbjct: 542 ttggatgt 549
>gb|DR387294.1|DR387294 RTHG1_20_F12.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_20_F12_A029 5', mRNA sequence
Length = 804
Score = 127 bits (64), Expect = 1e-027
Identities = 157/188 (83%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 241 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 300
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| | ||||||
Sbjct: 301 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacatttaggatgat 360
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 361 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 420
Query: 601 ttagatgt 608
|| |||||
Sbjct: 421 ttggatgt 428
>gb|DR684083.1|DR684083 EST1074160 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO70 3' end, mRNA sequence
Length = 751
Score = 127 bits (64), Expect = 1e-027
Identities = 157/188 (83%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 500 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 559
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 560 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 619
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| || || ||||||||||| |||||
Sbjct: 620 ttcaacctttgtggacttagtagccaagttccatactacgattatgcacttgacctgatt 679
Query: 601 ttagatgt 608
|| |||||
Sbjct: 680 ttggatgt 687
>gb|CF400393.1|CF400393 RTWW1_5_E07.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_E07_A015 3', mRNA sequence
Length = 756
Score = 117 bits (59), Expect = 1e-024
Identities = 143/171 (83%)
Strand = Plus / Minus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 222 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 163
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| ||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 162 tgtaatttaagaagcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 103
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|||||||| ||||| || || | |||||||||||| ||||| |||||||||
Sbjct: 102 ttcaacctttgtggacttagtagccaagttccatactatgattatgcactt 52
>gb|BQ696960.1|BQ696960 NXPV_047_D03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_047_D03 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 333
Score = 111 bits (56), Expect = 7e-023
Identities = 154/188 (81%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 86 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 145
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| | |||||| || || ||||| ||||||||||| ||||| | ||||
Sbjct: 146 tgtaatttaagagncaatgagttcttttgtgaagttgatgatgagtacattcngnntgat 205
Query: 541 ttcaacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgata 600
|||||||| ||||| || || | |||||||||||| ||||| ||||||||||| |||||
Sbjct: 206 ttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctgatt 265
Query: 601 ttagatgt 608
|| |||||
Sbjct: 266 ttggatgt 273
>gb|BE241217.1|BE241217 NXNV_180_E12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_180_E12 5' similar to Arabidopsis thaliana
sequence At2g44680 putative casein kinase II beta
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 202
Score = 101 bits (51), Expect = 7e-020
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 466 tggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgac 525
||||| || |||||||||| |||| |||||||| || || ||||| |||||||||||
Sbjct: 9 tggatctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgag 68
Query: 526 tacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactat 585
||||| || |||||||||||||| ||||| || || | |||||||||||| ||||| |||
Sbjct: 69 tacattcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattat 128
Query: 586 gcacttgatctgatattagatgt 608
|||||||| ||||| || |||||
Sbjct: 129 gcacttgacctgattttggatgt 151
>gb|DR682722.1|DR682722 EST1072797 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAB74 3' end, mRNA sequence
Length = 767
Score = 99.6 bits (50), Expect = 3e-019
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 421 agcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttc 480
||||||||||||||||| || ||||||||||| || || || || ||||| || ||||||
Sbjct: 625 agcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttggttc 684
Query: 481 tgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgat 540
|||| |||| |||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 685 tgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgat 744
Query: 541 ttcaacctctgtgg 554
|||||||| |||||
Sbjct: 745 ttcaacctttgtgg 758
>gb|CF398111.1|CF398111 RTDS3_21_F07.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_F07_A022 3', mRNA sequence
Length = 675
Score = 95.6 bits (48), Expect = 4e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|||||||| || || ||||| ||||||||||| ||||| || |||||||||||||| |||
Sbjct: 3 ggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgatttcaacctttgt 62
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgt 608
|| || || | |||||||||||| ||||| ||||||||||| ||||| || |||||
Sbjct: 63 ggacttagtagccaagttccatactatgattatgcacttgacctgattttggatgt 118
>gb|CO159714.1|CO159714 FLD1_15_H03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_H03_A029 3', mRNA sequence
Length = 741
Score = 95.6 bits (48), Expect = 4e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|||||||| || || ||||| ||||||||||| ||||| || |||||||||||||| |||
Sbjct: 11 ggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgatttcaacctttgt 70
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgt 608
|| || || | |||||||||||| ||||| ||||||||||| ||||| || |||||
Sbjct: 71 ggacttagtagccaagttccatactatgattatgcacttgacctgattttggatgt 126
>gb|DR017539.1|DR017539 STRS1_17_A01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A01_A034 3', mRNA sequence
Length = 783
Score = 95.6 bits (48), Expect = 4e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|||||||| || || ||||| ||||||||||| ||||| || |||||||||||||| |||
Sbjct: 11 ggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgatttcaacctttgt 70
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgt 608
|| || || | |||||||||||| ||||| ||||||||||| ||||| || |||||
Sbjct: 71 ggacttagtagccaagttccatactatgattatgcacttgacctgattttggatgt 126
>gb|DR093781.1|DR093781 STRR1_10_H08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_H08_A033 3', mRNA sequence
Length = 753
Score = 95.6 bits (48), Expect = 4e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|||||||| || || ||||| ||||||||||| ||||| || |||||||||||||| |||
Sbjct: 10 ggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgatttcaacctttgt 69
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgt 608
|| || || | |||||||||||| ||||| ||||||||||| ||||| || |||||
Sbjct: 70 ggacttagtagccaagttccatactatgattatgcacttgacctgattttggatgt 125
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,993
Number of Sequences: 355925
Number of extensions: 153993
Number of successful extensions: 40703
Number of sequences better than 0.5: 69
Number of HSP's better than 0.5 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40543
Number of HSP's gapped (non-prelim): 159
length of query: 1311
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1292
effective length of database: 210,514,662
effective search space: 271984943304
effective search space used: 271984943304
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)