BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.4
(760 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciat... 44 0.008
gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered lo... 44 0.008
gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pin... 44 0.008
gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pin... 44 0.008
gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pin... 44 0.008
gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus pota... 44 0.008
gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus pota... 44 0.008
gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch... 44 0.008
gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch... 44 0.008
gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch... 44 0.008
gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch... 44 0.008
gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response R... 44 0.008
gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response R... 44 0.008
gb|DR165633.1|DR165633 RTPHOS1_6_H02.b1_A029 Roots minus ph... 44 0.008
gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo li... 44 0.008
gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo li... 44 0.008
>gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088F04, mRNA sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 414 acaaactttccataatggatccttctagagatggcctgcaaacagg 369
>gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_F05_A021 5', mRNA sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 387 acaaactttccataatggatccttctagagatggcctgcaaacagg 342
>gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 3', mRNA sequence
Length = 788
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 248 acaaactttccataatggatccttctagagatggcctgcaaacagg 293
>gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_F04_A029 3', mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 119 acaaactttccataatggatccttctagagatggcctgcaaacagg 164
>gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 5', mRNA sequence
Length = 877
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 746 acaaactttccataatggatccttctagagatggcctgcaaacagg 791
>gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_A08_A029 5', mRNA sequence
Length = 866
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 764 acaaactttccataatggatccttctagagatggcctgcaaacagg 809
>gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C03_A029 3', mRNA sequence
Length = 853
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 300 acaaactttccataatggatccttctagagatggcctgcaaacagg 255
>gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 3', mRNA sequence
Length = 763
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 195 acaaactttccataatggatccttctagagatggcctgcaaacagg 150
>gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 5', mRNA sequence
Length = 766
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 429 acaaactttccataatggatccttctagagatggcctgcaaacagg 384
>gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D04_A034 3', mRNA sequence
Length = 778
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 166 acaaactttccataatggatccttctagagatggcctgcaaacagg 121
>gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_B09_A034 5', mRNA sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 594 acaaactttccataatggatccttctagagatggcctgcaaacagg 639
>gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 3', mRNA sequence
Length = 821
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 269 acaaactttccataatggatccttctagagatggcctgcaaacagg 224
>gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 5', mRNA sequence
Length = 735
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 451 acaaactttccataatggatccttctagagatggcctgcaaacagg 406
>gb|DR165633.1|DR165633 RTPHOS1_6_H02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_6_H02_A029 3', mRNA sequence
Length = 929
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 65 acaaactttccataatggatccttctagagatggcctgcaaacagg 20
>gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO79 3' end, mRNA sequence
Length = 780
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 455 acaaactttccataatggatccttctagagatggcctgcaaacagg 410
>gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD90 3' end, mRNA sequence
Length = 842
Score = 44.1 bits (22), Expect = 0.008
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 463 acaaacttcccatagtggatccttctggagagtgcctgcaagcagg 508
|||||||| ||||| ||||||||||| |||| |||||||| ||||
Sbjct: 494 acaaactttccataatggatccttctagagatggcctgcaaacagg 449
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,459
Number of Sequences: 355925
Number of extensions: 82459
Number of successful extensions: 22593
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22567
Number of HSP's gapped (non-prelim): 26
length of query: 760
length of database: 217,277,237
effective HSP length: 19
effective length of query: 741
effective length of database: 210,514,662
effective search space: 155991364542
effective search space used: 155991364542
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)