BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521353.2.1
(1279 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR688118.1|DR688118 EST1078202 Normalized pine embryo li... 94 2e-017
gb|DT634576.1|DT634576 EST1149507 Normalized pine embryo li... 92 7e-017
gb|CF391743.1|CF391743 RTDR3_11_D09.g1_A022 Loblolly pine r... 90 3e-016
gb|DR684264.1|DR684264 EST1074341 Normalized pine embryo li... 90 3e-016
gb|DR024293.1|DR024293 STRS1_63_H03.g1_A034 Shoot tip pitch... 84 2e-014
gb|DT630921.1|DT630921 EST1145852 Normalized pine embryo li... 52 6e-005
gb|AW011160.1|AW011160 ST17D08 Pine TriplEx shoot tip libra... 44 0.014
gb|BQ196992.1|BQ196992 NXLV108_A04_F NXLV (Nsf Xylem Late w... 44 0.014
gb|BX678940.1|BX678940 BX678940 RS Pinus pinaster cDNA clon... 44 0.014
>gb|DR688118.1|DR688118 EST1078202 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC091 3' end, mRNA sequence
Length = 800
Score = 93.7 bits (47), Expect = 2e-017
Identities = 110/131 (83%)
Strand = Plus / Minus
Query: 835 ctccagactagccactgcagaataactgtggttgcaggagtgaaagatttgattgtctgc 894
||||| |||||||| || |||| ||||| || |||||||| |||||||| |||||||||
Sbjct: 708 ctccacactagccattgaagaaatactgttgtagcaggagtaaaagatttaattgtctgc 649
Query: 895 atgaaggagactgggatgtagcgcaagctgacatttcccagcacaatgtttatgcagaag 954
||||| || || || ||||| |||| ||| ||||| ||||||||||| || ||||| |||
Sbjct: 648 atgaaagaaacaggtatgtaacgcaggctcacattccccagcacaatattgatgcaaaag 589
Query: 955 acgaaggacat 965
||||| |||||
Sbjct: 588 acgaatgacat 578
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1087 agagggaacttgaaatccagtttctggaagatccacttgttcatgatgatgacag 1141
||||| || ||||| |||| |||||| ||||||||||||||| | || |||||||
Sbjct: 456 agaggaaatttgaagtccaatttctgaaagatccacttgttcgtaataatgacag 402
>gb|DT634576.1|DT634576 EST1149507 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG748 3' end, mRNA sequence
Length = 715
Score = 91.7 bits (46), Expect = 7e-017
Identities = 109/130 (83%)
Strand = Plus / Minus
Query: 836 tccagactagccactgcagaataactgtggttgcaggagtgaaagatttgattgtctgca 895
|||| |||||||| || |||| ||||| || |||||||| |||||||| ||||||||||
Sbjct: 715 tccacactagccattgaagaaatactgttgtagcaggagtaaaagatttaattgtctgca 656
Query: 896 tgaaggagactgggatgtagcgcaagctgacatttcccagcacaatgtttatgcagaaga 955
|||| || || || ||||| |||| ||| ||||| ||||||||||| || ||||| ||||
Sbjct: 655 tgaaagaaacaggtatgtaacgcaggctcacattccccagcacaatattgatgcaaaaga 596
Query: 956 cgaaggacat 965
|||| |||||
Sbjct: 595 cgaatgacat 586
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1087 agagggaacttgaaatccagtttctggaagatccacttgttcatgatgatgacag 1141
||||| || ||||| |||| |||||| ||||||||||||||| | || |||||||
Sbjct: 464 agaggaaatttgaagtccaatttctgaaagatccacttgttcgtaataatgacag 410
>gb|CF391743.1|CF391743 RTDR3_11_D09.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_11_D09_A022 5', mRNA
sequence
Length = 757
Score = 89.7 bits (45), Expect = 3e-016
Identities = 186/233 (79%)
Strand = Plus / Minus
Query: 733 cagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgccaact 792
|||||||| ||||| ||||| ||||| ||||| || ||||| || || || || || |||
Sbjct: 660 cagaaaccaaaaatattgaaactaagttctgtaacagaagtaagaagaatgccacctact 601
Query: 793 atagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccactgc 852
||||| ||||| || ||||||||| || ||| ||| ||||| |||||||| ||
Sbjct: 600 ataggtaccagggaccaccatatgcgtgtatcaaaagcctttctccacactagccattga 541
Query: 853 agaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatg 912
|||| ||||| || |||||||| |||||||| |||||||||||||| || || || |||
Sbjct: 540 agaaatactgttgtagcaggagtaaaagatttaattgtctgcatgaaagaaacaggtatg 481
Query: 913 tagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacat 965
|| |||| ||| ||||| ||||||||||| || ||||| ||||| || |||||
Sbjct: 480 taacgcaggctcacattccccagcacaatattgatgcaaaagacaaatgacat 428
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 1087 agagggaacttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacg 1146
||||| || ||||| |||| |||||| ||||||||||||||| | || ||||||| ||
Sbjct: 306 agaggaaatttgaagtccaatttctgaaagatccacttgttcgtaataatgacagcaaca 247
Query: 1147 ttgaagccccacca 1160
||||||| ||||||
Sbjct: 246 ttgaagcaccacca 233
>gb|DR684264.1|DR684264 EST1074341 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAQ72 3' end, mRNA sequence
Length = 764
Score = 89.7 bits (45), Expect = 3e-016
Identities = 186/233 (79%)
Strand = Plus / Minus
Query: 733 cagaaaccgaaaatgttgaagctaagctctgtcaccgaagtcaggagtattccgccaact 792
|||||||| ||||| ||||| ||||| ||||| || ||||| || || || || || |||
Sbjct: 646 cagaaaccaaaaatattgaaactaagttctgtaacagaagtaagaagaatgccacccact 587
Query: 793 atagggaccagcgaagcccatatgcgccactcgaaatgcttgctccagactagccactgc 852
||||| ||||| || ||||||||| || ||| ||| ||||| |||||||| ||
Sbjct: 586 ataggtaccagggaccaccatatgcgtgtatcaaaagcctttctccacactagccattga 527
Query: 853 agaataactgtggttgcaggagtgaaagatttgattgtctgcatgaaggagactgggatg 912
|||| ||||| || |||||||| |||||||| |||||||||||||| || || || |||
Sbjct: 526 agaaatactgttgtagcaggagtaaaagatttaattgtctgcatgaaagaaacaggtatg 467
Query: 913 tagcgcaagctgacatttcccagcacaatgtttatgcagaagacgaaggacat 965
|| |||| ||| ||||| ||||||||||| || ||||| ||||| || |||||
Sbjct: 466 taacgcaggctcacattccccagcacaatattgatgcaaaagacaaatgacat 414
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 1087 agagggaacttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacg 1146
||||| || ||||| |||| |||||| ||||||||||||||| | || ||||||| ||
Sbjct: 292 agaggaaatttgaagtccaatttctgaaagatccacttgttcgtaataatgacagcaaca 233
Query: 1147 ttgaagccccacca 1160
||||||| ||||||
Sbjct: 232 ttgaagcaccacca 219
>gb|DR024293.1|DR024293 STRS1_63_H03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_H03_A034 5', mRNA sequence
Length = 690
Score = 83.8 bits (42), Expect = 2e-014
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 835 ctccagactagccactgcagaataactgtggttgcaggagtgaaagatttgattgtctgc 894
||||| |||||||| || |||| ||||| || |||||||| |||||||| |||||||||
Sbjct: 129 ctccacactagccattgaagaaatactgttgtagcaggagtaaaagatttaattgtctgc 70
Query: 895 atgaaggagactgggatgtagcgcaagctgacatttcccagcacaatgtttatgcagaag 954
||||| || || || ||||| |||| ||| ||||| ||||||||||| || ||||| |||
Sbjct: 69 atgaaagaaacaggtatgtaacgcaggctcacattccccagcacaatattgatgcaaaag 10
Query: 955 ac 956
||
Sbjct: 9 ac 8
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 307 ctcacatagccatagaaagtgcaacc 332
|||||||| |||||||||||||||||
Sbjct: 657 ctcacatatccatagaaagtgcaacc 632
>gb|DT630921.1|DT630921 EST1145852 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF243 3' end, mRNA sequence
Length = 810
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 1087 agagggaacttgaaatccagtttctggaagatccacttgttcatgatgatgacagtgacg 1146
||||| || ||||| |||| |||||| ||||||||||||||| | || ||||||| ||
Sbjct: 750 agaggaaatttgaagtccaatttctgaaagatccacttgttcgtaataatgacagcaaca 691
Query: 1147 ttgaagccccacca 1160
||||||| ||||||
Sbjct: 690 ttgaagcaccacca 677
>gb|AW011160.1|AW011160 ST17D08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST17D08, mRNA sequence
Length = 595
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 307 ctcacatagccatagaaagtgcaacc 332
|||||||| |||||||||||||||||
Sbjct: 259 ctcacatatccatagaaagtgcaacc 234
>gb|BQ196992.1|BQ196992 NXLV108_A04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV108_A04 5' similar to Arabidopsis thaliana
sequence At1g77610 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 307 ctcacatagccatagaaagtgcaacc 332
|||||||| |||||||||||||||||
Sbjct: 142 ctcacatatccatagaaagtgcaacc 117
>gb|BX678940.1|BX678940 BX678940 RS Pinus pinaster cDNA clone RS17C06, mRNA sequence
Length = 262
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 307 ctcacatagccatagaaagtgcaacc 332
|||||||| |||||||||||||||||
Sbjct: 181 ctcacatatccatagaaagtgcaacc 156
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,371
Number of Sequences: 355925
Number of extensions: 154371
Number of successful extensions: 40138
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40122
Number of HSP's gapped (non-prelim): 16
length of query: 1279
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1260
effective length of database: 210,514,662
effective search space: 265248474120
effective search space used: 265248474120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)