BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493961.2.1
         (733 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW289545.1|AW289545  NXNV002B12F Nsf Xylem Normal wood Ve...    48   5e-004
gb|CD028118.1|CD028118  NXNV002B12 Nsf Xylem Normal wood Ver...    48   5e-004

>gb|AW289545.1|AW289545 NXNV002B12F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
           NXNV002B12 5', mRNA sequence
          Length = 475

 Score = 48.1 bits (24), Expect = 5e-004
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 328 cccactgcacggctgacaccccgtgaagtgcgtcac 363
           ||||||||| ||||||||||| |||||||| |||||
Sbjct: 435 cccactgcagggctgacacccagtgaagtgagtcac 400



>gb|CD028118.1|CD028118 NXNV002B12 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
           NXNV002B12 5' similar to Arabidopsis thaliana sequence
           At4g37690 putative protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 475

 Score = 48.1 bits (24), Expect = 5e-004
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 328 cccactgcacggctgacaccccgtgaagtgcgtcac 363
           ||||||||| ||||||||||| |||||||| |||||
Sbjct: 435 cccactgcagggctgacacccagtgaagtgagtcac 400



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,054
Number of Sequences: 355925
Number of extensions: 51054
Number of successful extensions: 15732
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15730
Number of HSP's gapped (non-prelim): 2
length of query: 733
length of database: 217,277,237
effective HSP length: 19
effective length of query: 714
effective length of database: 210,514,662
effective search space: 150307468668
effective search space used: 150307468668
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)