BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493695.2.1
(570 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ701477.1|BQ701477 NXSI_064_G12_F NXSI (Nsf Xylem Side ... 38 0.38
gb|CV137577.1|CV137577 EST848786 Sequencing ESTs from loblo... 38 0.38
gb|DN448185.1|DN448185 EST943984 Sequencing ESTs from loblo... 38 0.38
gb|DN448491.1|DN448491 EST944290 Sequencing ESTs from loblo... 38 0.38
gb|DN610458.1|DN610458 EST963508 Subtracted pine embryo lib... 38 0.38
gb|DN610930.1|DN610930 EST963980 Subtracted pine embryo lib... 38 0.38
gb|DN611253.1|DN611253 EST964303 Subtracted pine embryo lib... 38 0.38
gb|DN613080.1|DN613080 EST966130 Subtracted pine embryo lib... 38 0.38
gb|DN613780.1|DN613780 EST966830 Subtracted pine embryo lib... 38 0.38
gb|DN614712.1|DN614712 EST967762 Subtracted pine embryo lib... 38 0.38
gb|DT628243.1|DT628243 EST1156992 Subtracted pine embryo li... 38 0.38
gb|DT628731.1|DT628731 EST1155301 Subtracted pine embryo li... 38 0.38
>gb|BQ701477.1|BQ701477 NXSI_064_G12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_064_G12 5', mRNA sequence
Length = 272
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 cggcagcggcggcggcggc 230
|||||||||||||||||||
Sbjct: 134 cggcagcggcggcggcggc 152
>gb|CV137577.1|CV137577 EST848786 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAQ52 5' end, mRNA sequence
Length = 727
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 tcggcggcggcggcggaag 283
|||||||||||||||||||
Sbjct: 527 tcggcggcggcggcggaag 545
>gb|DN448185.1|DN448185 EST943984 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIC191 5' end, mRNA sequence
Length = 856
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 tcggcggcggcggcggaag 283
|||||||||||||||||||
Sbjct: 503 tcggcggcggcggcggaag 521
>gb|DN448491.1|DN448491 EST944290 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIC549 5' end, mRNA sequence
Length = 788
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 265 tcggcggcggcggcggaag 283
|||||||||||||||||||
Sbjct: 503 tcggcggcggcggcggaag 521
>gb|DN610458.1|DN610458 EST963508 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAQ06, mRNA sequence
Length = 471
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 285 gaaggggaaggagaaggag 303
|||||||||||||||||||
Sbjct: 264 gaaggggaaggagaaggag 282
>gb|DN610930.1|DN610930 EST963980 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAV71, mRNA sequence
Length = 472
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 285 gaaggggaaggagaaggag 303
|||||||||||||||||||
Sbjct: 209 gaaggggaaggagaaggag 191
>gb|DN611253.1|DN611253 EST964303 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAZ69, mRNA sequence
Length = 506
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 285 gaaggggaaggagaaggag 303
|||||||||||||||||||
Sbjct: 264 gaaggggaaggagaaggag 282
>gb|DN613080.1|DN613080 EST966130 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABN84, mRNA sequence
Length = 472
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 285 gaaggggaaggagaaggag 303
|||||||||||||||||||
Sbjct: 209 gaaggggaaggagaaggag 191
>gb|DN613780.1|DN613780 EST966830 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABW37, mRNA sequence
Length = 472
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 285 gaaggggaaggagaaggag 303
|||||||||||||||||||
Sbjct: 264 gaaggggaaggagaaggag 282
>gb|DN614712.1|DN614712 EST967762 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC729, mRNA sequence
Length = 472
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 285 gaaggggaaggagaaggag 303
|||||||||||||||||||
Sbjct: 264 gaaggggaaggagaaggag 282
>gb|DT628243.1|DT628243 EST1156992 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCV82 5' end, mRNA sequence
Length = 482
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 285 gaaggggaaggagaaggag 303
|||||||||||||||||||
Sbjct: 219 gaaggggaaggagaaggag 201
>gb|DT628731.1|DT628731 EST1155301 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD136 5' end, mRNA sequence
Length = 496
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 285 gaaggggaaggagaaggag 303
|||||||||||||||||||
Sbjct: 233 gaaggggaaggagaaggag 215
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,701
Number of Sequences: 355925
Number of extensions: 79701
Number of successful extensions: 29695
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29643
Number of HSP's gapped (non-prelim): 45
length of query: 570
length of database: 217,277,237
effective HSP length: 19
effective length of query: 551
effective length of database: 210,514,662
effective search space: 115993578762
effective search space used: 115993578762
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)