BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV033248.1|CV033248 RTNACL1_33_F11.b1_A029 Roots plus ad... 46 0.002
gb|DR048149.1|DR048149 RTBOR1_6_H08.g2_A029 Roots plus adde... 46 0.002
gb|AI812665.1|AI812665 17F5 Pine Lambda Zap Xylem library P... 42 0.037
gb|AW010808.1|AW010808 ST14C05 Pine TriplEx shoot tip libra... 42 0.037
gb|AW290164.1|AW290164 NXNV012F03F Nsf Xylem Normal wood Ve... 42 0.037
gb|AW290411.1|AW290411 NXNV020B02F Nsf Xylem Normal wood Ve... 42 0.037
gb|AW290662.1|AW290662 NXNV044F08F Nsf Xylem Normal wood Ve... 42 0.037
gb|AW758758.1|AW758758 NXNV_089_C06_F Nsf Xylem Normal wood... 42 0.037
gb|BE123758.1|BE123758 NXNV_153_G11_F Nsf Xylem Normal wood... 42 0.037
gb|BF169429.1|BF169429 NXCI_121_B06_F NXCI (Nsf Xylem Compr... 42 0.037
gb|BF777161.1|BF777161 NXSI_066_A01_F NXSI (Nsf Xylem Side ... 42 0.037
gb|BM133257.1|BM133257 NXLV_003_E06_F NXLV (Nsf Xylem Late ... 42 0.037
gb|BM133504.1|BM133504 NXLV_007_H04_F NXLV (Nsf Xylem Late ... 42 0.037
gb|BM133675.1|BM133675 NXLV_010_F10_F NXLV (Nsf Xylem Late ... 42 0.037
gb|BM157513.1|BM157513 NXLV_020_C11_F NXLV (Nsf Xylem Late ... 42 0.037
gb|BM158755.1|BM158755 NXLV_039_H10_F NXLV (Nsf Xylem Late ... 42 0.037
gb|BM367489.1|BM367489 NXLV_049_H08_F NXLV (Nsf Xylem Late ... 42 0.037
gb|BM493376.1|BM493376 NXLV_063_C10_F NXLV (Nsf Xylem Late ... 42 0.037
gb|BM902870.1|BM902870 NXLV_074_G02_F NXLV (Nsf Xylem Late ... 42 0.037
gb|BQ197174.1|BQ197174 NXLV110_D10_F NXLV (Nsf Xylem Late w... 42 0.037
gb|BQ197851.1|BQ197851 NXLV121_D12_F NXLV (Nsf Xylem Late w... 42 0.037
gb|BQ197971.1|BQ197971 NXLV123_D07_F NXLV (Nsf Xylem Late w... 42 0.037
gb|BQ198376.1|BQ198376 NXLV130_A08_F NXLV (Nsf Xylem Late w... 42 0.037
gb|BQ198521.1|BQ198521 NXLV132_C12_F NXLV (Nsf Xylem Late w... 42 0.037
gb|BQ634539.1|BQ634539 NXRV070_C01_F NXRV (Nsf Xylem Root w... 42 0.037
gb|CD021050.1|CD021050 NXNV_127_A03_F Nsf Xylem Normal wood... 42 0.037
gb|CD021330.1|CD021330 NXNV_069_G09_F Nsf Xylem Normal wood... 42 0.037
gb|CD026810.1|CD026810 NXNV012F03 Nsf Xylem Normal wood Ver... 42 0.037
gb|CD027072.1|CD027072 NXNV020B02 Nsf Xylem Normal wood Ver... 42 0.037
gb|CD027324.1|CD027324 NXNV044F08 Nsf Xylem Normal wood Ver... 42 0.037
gb|CF395565.1|CF395565 RTDS2_12_G03.g1_A021 Drought-stresse... 42 0.037
gb|CF471522.1|CF471522 RTDS1_4_D06.b1_A015 Drought-stressed... 42 0.037
gb|CF471625.1|CF471625 RTDS1_4_D06.g1_A015 Drought-stressed... 42 0.037
gb|CF472038.1|CF472038 RTDS1_8_B01.b1_A015 Drought-stressed... 42 0.037
gb|CF663620.1|CF663620 RTCNT1_4_C10.b1_A029 Root control Pi... 42 0.037
gb|CF663697.1|CF663697 RTCNT1_4_C10.g1_A029 Root control Pi... 42 0.037
gb|CF668877.1|CF668877 RTCNT1_39_E09.b1_A029 Root control P... 42 0.037
gb|CF668961.1|CF668961 RTCNT1_39_E09.g1_A029 Root control P... 42 0.037
gb|CF672821.1|CF672821 RTCNT1_74_D10.b1_A029 Root control P... 42 0.037
gb|CF672891.1|CF672891 RTCNT1_74_D10.g1_A029 Root control P... 42 0.037
gb|BX682000.1|BX682000 BX682000 RS Pinus pinaster cDNA clon... 42 0.037
gb|CO157940.1|CO157940 FLD1_3_E11.b1_A029 Root flooded Pinu... 42 0.037
gb|CO159412.1|CO159412 FLD1_13_A05.g1_A029 Root flooded Pin... 42 0.037
gb|CO160683.1|CO160683 FLD1_23_F07.b1_A029 Root flooded Pin... 42 0.037
gb|CO161000.1|CO161000 FLD1_26_B03.b1_A029 Root flooded Pin... 42 0.037
gb|CO161072.1|CO161072 FLD1_26_B03.g1_A029 Root flooded Pin... 42 0.037
gb|CO161948.1|CO161948 FLD1_32_E06.b1_A029 Root flooded Pin... 42 0.037
gb|CO162022.1|CO162022 FLD1_32_E06.g1_A029 Root flooded Pin... 42 0.037
gb|CO163577.1|CO163577 FLD1_42_B04.g1_A029 Root flooded Pin... 42 0.037
gb|CO165000.1|CO165000 FLD1_51_D12.g1_A029 Root flooded Pin... 42 0.037
gb|CO171485.1|CO171485 NDL1_22_C02.b1_A029 Needles control ... 42 0.037
gb|CO176098.1|CO176098 NDL1_59_E02.g1_A029 Needles control ... 42 0.037
gb|CV036165.1|CV036165 RTNACL1_57_E02.b1_A029 Roots plus ad... 42 0.037
gb|CV036232.1|CV036232 RTNACL1_57_E02.g1_A029 Roots plus ad... 42 0.037
gb|DR011604.1|DR011604 HEAT1_6_F04.g1_A029 Root at 37 C for... 42 0.037
gb|DR049656.1|DR049656 RTBOR1_18_E06.b1_A029 Roots plus add... 42 0.037
gb|DR079017.1|DR079017 RTFEPL1_8_A04.g1_A029 Roots plus add... 42 0.037
gb|DR080062.1|DR080062 RTFEPL1_20_A02.b1_A029 Roots plus ad... 42 0.037
gb|DR080119.1|DR080119 RTFEPL1_20_A02.g1_A029 Roots plus ad... 42 0.037
gb|DR089047.1|DR089047 RTAL1_6_F01.b1_A029 Roots plus added... 42 0.037
gb|DR089132.1|DR089132 RTAL1_6_F01.g1_A029 Roots plus added... 42 0.037
gb|DR160385.1|DR160385 RTFE1_5_E02.g1_A029 Roots minus iron... 42 0.037
gb|DR168508.1|DR168508 RTPHOS1_26_A01.b1_A029 Roots minus p... 42 0.037
gb|DR168576.1|DR168576 RTPHOS1_26_A01.g1_A029 Roots minus p... 42 0.037
gb|DR743285.1|DR743285 RTCU1_14_G08.g1_A029 Roots plus adde... 42 0.037
gb|DR743483.1|DR743483 RTCU1_16_E04.b1_A029 Roots plus adde... 42 0.037
gb|DN615546.1|DN615546 EST968596 Subtracted pine embryo lib... 40 0.15
>gb|CV033248.1|CV033248 RTNACL1_33_F11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_F11_A029 3', mRNA sequence
Length = 844
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 259 cctcctcttcttcctcgtcctcctcct 285
|||||||||||||||| ||||||||||
Sbjct: 641 cctcctcttcttcctcctcctcctcct 667
>gb|DR048149.1|DR048149 RTBOR1_6_H08.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_H08_A029 5', mRNA sequence
Length = 839
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 cctcctcttcttcctcgtcctcctcct 285
|||||||||||||||| ||||||||||
Sbjct: 90 cctcctcttcttcctcctcctcctcct 64
>gb|AI812665.1|AI812665 17F5 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 552
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 283 aagtactgcgggatctgctgc 303
>gb|AW010808.1|AW010808 ST14C05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST14C05, mRNA sequence
Length = 471
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 173 aagtactgcgggatctgctgc 193
>gb|AW290164.1|AW290164 NXNV012F03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV012F03 5', mRNA sequence
Length = 524
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 273 aagtactgcgggatctgctgc 293
>gb|AW290411.1|AW290411 NXNV020B02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV020B02 5', mRNA sequence
Length = 254
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 28 aagtactgcgggatctgctgc 48
>gb|AW290662.1|AW290662 NXNV044F08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044F08 5', mRNA sequence
Length = 452
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 202 aagtactgcgggatctgctgc 222
>gb|AW758758.1|AW758758 NXNV_089_C06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_089_C06 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 390
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 202 aagtactgcgggatctgctgc 222
>gb|BE123758.1|BE123758 NXNV_153_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_153_G11 5', mRNA sequence
Length = 397
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 344 aagtactgcgggatctgctgc 364
>gb|BF169429.1|BF169429 NXCI_121_B06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_121_B06 5' similar to Arabidopsis
thaliana sequence At2g14900 similar to
gibberellin-regulated proteins see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 266 aagtactgcgggatctgctgc 286
>gb|BF777161.1|BF777161 NXSI_066_A01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_066_A01 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 293 aagtactgcgggatctgctgc 313
>gb|BM133257.1|BM133257 NXLV_003_E06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_003_E06 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 400
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 53 aagtactgcgggatctgctgc 73
>gb|BM133504.1|BM133504 NXLV_007_H04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_007_H04 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 244
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 187 aagtactgcgggatctgctgc 207
>gb|BM133675.1|BM133675 NXLV_010_F10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_010_F10 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 496
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 152 aagtactgcgggatctgctgc 172
>gb|BM157513.1|BM157513 NXLV_020_C11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_020_C11 5' similar to Arabidopsis thaliana
sequence At5g59845 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 32 aagtactgcgggatctgctgc 52
>gb|BM158755.1|BM158755 NXLV_039_H10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_039_H10 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 434
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 132 aagtactgcgggatctgctgc 152
>gb|BM367489.1|BM367489 NXLV_049_H08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_049_H08 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 497
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 135 aagtactgcgggatctgctgc 155
>gb|BM493376.1|BM493376 NXLV_063_C10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_063_C10 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 290
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 144 aagtactgcgggatctgctgc 164
>gb|BM902870.1|BM902870 NXLV_074_G02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_074_G02 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 333
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 163 aagtactgcgggatctgctgc 183
>gb|BQ197174.1|BQ197174 NXLV110_D10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV110_D10 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 546
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 186 aagtactgcgggatctgctgc 206
>gb|BQ197851.1|BQ197851 NXLV121_D12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV121_D12 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 443
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 94 aagtactgcgggatctgctgc 114
>gb|BQ197971.1|BQ197971 NXLV123_D07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV123_D07 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 489
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 140 aagtactgcgggatctgctgc 160
>gb|BQ198376.1|BQ198376 NXLV130_A08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV130_A08 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 479
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 113 aagtactgcgggatctgctgc 133
>gb|BQ198521.1|BQ198521 NXLV132_C12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV132_C12 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 376
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 30 aagtactgcgggatctgctgc 50
>gb|BQ634539.1|BQ634539 NXRV070_C01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV070_C01 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 612
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 296 aagtactgcgggatctgctgc 316
>gb|CD021050.1|CD021050 NXNV_127_A03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_127_A03 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 109
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 12 aagtactgcgggatctgctgc 32
>gb|CD021330.1|CD021330 NXNV_069_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_069_G09 5' similar to Arabidopsis thaliana
sequence At2g14900 similar to gibberellin-regulated
proteins see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 173
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 82 aagtactgcgggatctgctgc 102
>gb|CD026810.1|CD026810 NXNV012F03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV012F03 5' similar to Arabidopsis thaliana sequence
At2g14900 similar to gibberellin-regulated proteins see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 524
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 273 aagtactgcgggatctgctgc 293
>gb|CD027072.1|CD027072 NXNV020B02 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV020B02 5' similar to Arabidopsis thaliana sequence
At2g14900 similar to gibberellin-regulated proteins see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 254
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 28 aagtactgcgggatctgctgc 48
>gb|CD027324.1|CD027324 NXNV044F08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044F08 5' similar to Arabidopsis thaliana sequence
At2g14900 similar to gibberellin-regulated proteins see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 452
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 202 aagtactgcgggatctgctgc 222
>gb|CF395565.1|CF395565 RTDS2_12_G03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_12_G03_A021 5', mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 287 aagtactgcgggatctgctgc 307
>gb|CF471522.1|CF471522 RTDS1_4_D06.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_4_D06_A015 3', mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 286 aagtactgcgggatctgctgc 306
>gb|CF471625.1|CF471625 RTDS1_4_D06.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_4_D06_A015 5', mRNA sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 290 aagtactgcgggatctgctgc 310
>gb|CF472038.1|CF472038 RTDS1_8_B01.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_8_B01_A015 3', mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 179 aagtactgcgggatctgctgc 199
>gb|CF663620.1|CF663620 RTCNT1_4_C10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_C10_A029 3', mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 320 aagtactgcgggatctgctgc 340
>gb|CF663697.1|CF663697 RTCNT1_4_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_C10_A029 5', mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 566 aagtactgcgggatctgctgc 586
>gb|CF668877.1|CF668877 RTCNT1_39_E09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_E09_A029 3', mRNA sequence
Length = 532
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 177 aagtactgcgggatctgctgc 197
>gb|CF668961.1|CF668961 RTCNT1_39_E09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_E09_A029 5', mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 530 aagtactgcgggatctgctgc 550
>gb|CF672821.1|CF672821 RTCNT1_74_D10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D10_A029 3', mRNA sequence
Length = 649
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 299 aagtactgcgggatctgctgc 319
>gb|CF672891.1|CF672891 RTCNT1_74_D10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D10_A029 5', mRNA sequence
Length = 600
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 250 aagtactgcgggatctgctgc 270
>gb|BX682000.1|BX682000 BX682000 RS Pinus pinaster cDNA clone RS67H12, mRNA sequence
Length = 508
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 303 aagtactgcgggatctgctgc 323
>gb|CO157940.1|CO157940 FLD1_3_E11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_3_E11_A029 3', mRNA sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 301 aagtactgcgggatctgctgc 321
>gb|CO159412.1|CO159412 FLD1_13_A05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_13_A05_A029 5', mRNA sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 380 aagtactgcgggatctgctgc 360
>gb|CO160683.1|CO160683 FLD1_23_F07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_23_F07_A029 3', mRNA sequence
Length = 779
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 411 aagtactgcgggatctgctgc 431
>gb|CO161000.1|CO161000 FLD1_26_B03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_26_B03_A029 3', mRNA sequence
Length = 910
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 565 aagtactgcgggatctgctgc 585
>gb|CO161072.1|CO161072 FLD1_26_B03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_26_B03_A029 5', mRNA sequence
Length = 844
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 699 aagtactgcgggatctgctgc 719
>gb|CO161948.1|CO161948 FLD1_32_E06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_32_E06_A029 3', mRNA sequence
Length = 814
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 351 aagtactgcgggatctgctgc 371
>gb|CO162022.1|CO162022 FLD1_32_E06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_32_E06_A029 5', mRNA sequence
Length = 872
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 540 aagtactgcgggatctgctgc 560
>gb|CO163577.1|CO163577 FLD1_42_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_42_B04_A029 5', mRNA sequence
Length = 667
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 278 aagtactgcgggatctgctgc 298
>gb|CO165000.1|CO165000 FLD1_51_D12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_51_D12_A029 5', mRNA sequence
Length = 808
Score = 42.1 bits (21), Expect = 0.037
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 386 aagtactgcgggatctgctgc 406
|||||||||||||||||||||
Sbjct: 277 aagtactgcgggatctgctgc 297
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,928
Number of Sequences: 355925
Number of extensions: 102928
Number of successful extensions: 30212
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30138
Number of HSP's gapped (non-prelim): 74
length of query: 870
length of database: 217,277,237
effective HSP length: 19
effective length of query: 851
effective length of database: 210,514,662
effective search space: 179147977362
effective search space used: 179147977362
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)