BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2486118.2.1
(635 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF010489.1|BF010489 NXCI_084_F04_F NXCI (Nsf Xylem Compr... 64 7e-009
gb|DR690019.1|DR690019 EST1080105 Normalized pine embryo li... 64 7e-009
gb|DT631440.1|DT631440 EST1146371 Normalized pine embryo li... 64 7e-009
gb|DR683559.1|DR683559 EST1073635 Normalized pine embryo li... 52 3e-005
gb|CO158223.1|CO158223 FLD1_5_A09.g1_A029 Root flooded Pinu... 46 0.002
gb|DR100267.1|DR100267 STRR1_62_H11.g1_A033 Stem Response R... 46 0.002
gb|DR160218.1|DR160218 RTFE1_4_D09.g1_A029 Roots minus iron... 46 0.002
gb|CR394273.1|CR394273 CR394273 RN Pinus pinaster cDNA clon... 42 0.027
>gb|BF010489.1|BF010489 NXCI_084_F04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_084_F04 5' similar to Arabidopsis
thaliana sequence At3g03050 putative cellulose synthase
catalytic subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 63.9 bits (32), Expect = 7e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 173 ttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggcctgatggg 228
|||||||||||||||||||||||||| || || ||||| || |||||| |||||||
Sbjct: 38 ttcttcagcttctgggtgctggcgcatctctatccgtttgctaagggcttgatggg 93
>gb|DR690019.1|DR690019 EST1080105 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACQ16 3' end, mRNA sequence
Length = 846
Score = 63.9 bits (32), Expect = 7e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 173 ttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggcctgatggg 228
|||||||||||||||||||||||||| || || ||||| || |||||| |||||||
Sbjct: 653 ttcttcagcttctgggtgctggcgcatctctatccgtttgctaagggcttgatggg 708
>gb|DT631440.1|DT631440 EST1146371 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF879 3' end, mRNA sequence
Length = 880
Score = 63.9 bits (32), Expect = 7e-009
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 173 ttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggcctgatggg 228
|||||||||||||||||||||||||| || || ||||| || |||||| |||||||
Sbjct: 695 ttcttcagcttctgggtgctggcgcatctctatccgtttgctaagggcttgatggg 750
>gb|DR683559.1|DR683559 EST1073635 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAI64 3' end, mRNA sequence
Length = 717
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 173 ttcttcagcttctgggtgctggcgca 198
||||||||||||||||||||||||||
Sbjct: 687 ttcttcagcttctgggtgctggcgca 712
>gb|CO158223.1|CO158223 FLD1_5_A09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_5_A09_A029 5', mRNA sequence
Length = 852
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 147 agtggagcaagctgctgggcggcgtcttcttcagcttctgggt 189
|||||||||| ||||| || || || |||||||||||||||||
Sbjct: 41 agtggagcaaactgcttggaggagttttcttcagcttctgggt 83
>gb|DR100267.1|DR100267 STRR1_62_H11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_62_H11_A033 5', mRNA sequence
Length = 549
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 147 agtggagcaagctgctgggcggcgtcttcttcagcttctgggt 189
|||||||||| ||||| || || || |||||||||||||||||
Sbjct: 382 agtggagcaaactgcttggaggagttttcttcagcttctgggt 424
>gb|DR160218.1|DR160218 RTFE1_4_D09.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_4_D09_A029 5', mRNA sequence
Length = 756
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 147 agtggagcaagctgctgggcggcgtcttcttcagcttctgggt 189
|||||||||| ||||| || || || |||||||||||||||||
Sbjct: 678 agtggagcaaactgcttggaggagttttcttcagcttctgggt 720
>gb|CR394273.1|CR394273 CR394273 RN Pinus pinaster cDNA clone RN76A07, mRNA sequence
Length = 298
Score = 42.1 bits (21), Expect = 0.027
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 149 tggagcaagctgctgggcggcgtcttcttcagcttctgggt 189
|||||||| ||||| || || || |||||||||||||||||
Sbjct: 13 tggagcaaactgcttggaggagttttcttcagcttctgggt 53
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,108
Number of Sequences: 355925
Number of extensions: 64108
Number of successful extensions: 18716
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18704
Number of HSP's gapped (non-prelim): 12
length of query: 635
length of database: 217,277,237
effective HSP length: 19
effective length of query: 616
effective length of database: 210,514,662
effective search space: 129677031792
effective search space used: 129677031792
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)