BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485944.3.1
(991 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE123786.1|BE123786 NXNV_156_D04_F Nsf Xylem Normal wood... 54 1e-005
gb|BF010579.1|BF010579 NXCI_086_D01_F NXCI (Nsf Xylem Compr... 54 1e-005
gb|BF186357.1|BF186357 NXCI_136_H08_F NXCI (Nsf Xylem Compr... 54 1e-005
gb|BI076958.1|BI076958 NXPV_085_C05_F NXPV (Nsf Xylem Plani... 54 1e-005
gb|CO166296.1|CO166296 FLD1_61_A03.b1_A029 Root flooded Pin... 54 1e-005
gb|CO171526.1|CO171526 NDL1_22_B02.g1_A029 Needles control ... 54 1e-005
gb|CO175283.1|CO175283 NDL1_53_E04.g1_A029 Needles control ... 54 1e-005
gb|CO197987.1|CO197987 GEO1_10_B09.g1_A029 Root gravitropis... 54 1e-005
gb|CO362430.1|CO362430 RTK1_3_B05.g1_A029 Roots minus potas... 54 1e-005
gb|CO363879.1|CO363879 RTK1_12_H06.b1_A029 Roots minus pota... 54 1e-005
gb|CO363973.1|CO363973 RTK1_12_H06.g1_A029 Roots minus pota... 54 1e-005
gb|CO366954.1|CO366954 RTK1_31_F04.b1_A029 Roots minus pota... 54 1e-005
gb|CO370342.1|CO370342 RTK1_67_F08.b1_A029 Roots minus pota... 54 1e-005
gb|CO370421.1|CO370421 RTK1_67_F08.g1_A029 Roots minus pota... 54 1e-005
gb|CV033406.1|CV033406 RTNACL1_34_G09.b1_A029 Roots plus ad... 54 1e-005
gb|CV033490.1|CV033490 RTNACL1_34_G09.g1_A029 Roots plus ad... 54 1e-005
gb|CV033837.1|CV033837 RTNACL1_36_H11.g1_A029 Roots plus ad... 54 1e-005
gb|CV036294.1|CV036294 RTNACL1_58_D08.b1_A029 Roots plus ad... 54 1e-005
gb|CV036353.1|CV036353 RTNACL1_58_D08.g1_A029 Roots plus ad... 54 1e-005
gb|CX646201.1|CX646201 COLD1_7_H09.g1_A029 Root cold Pinus ... 54 1e-005
gb|DR016802.1|DR016802 STRS1_12_F10.b1_A034 Shoot tip pitch... 54 1e-005
gb|DR016888.1|DR016888 STRS1_12_F10.g1_A034 Shoot tip pitch... 54 1e-005
gb|DR019851.1|DR019851 STRS1_32_G08.g1_A034 Shoot tip pitch... 54 1e-005
gb|DR024500.1|DR024500 STRS1_65_H09.b1_A034 Shoot tip pitch... 54 1e-005
gb|DR050437.1|DR050437 RTBOR1_23_B03.g1_A029 Roots plus add... 54 1e-005
gb|DR050667.1|DR050667 RTBOR1_25_A04.b1_A029 Roots plus add... 54 1e-005
gb|DR052064.1|DR052064 RTCA1_2_E06.b1_A029 Roots minus calc... 54 1e-005
gb|DR052143.1|DR052143 RTCA1_2_E06.g1_A029 Roots minus calc... 54 1e-005
gb|DR055426.1|DR055426 RTCA1_23_D05.g2_A029 Roots minus cal... 54 1e-005
gb|DR060181.1|DR060181 RTNIT1_26_F02.b1_A029 Roots minus ni... 54 1e-005
gb|DR060259.1|DR060259 RTNIT1_26_F02.g1_A029 Roots minus ni... 54 1e-005
gb|DR069279.1|DR069279 RTDK1_6_D07.b1_A029 Roots, dark Pinu... 54 1e-005
gb|DR069342.1|DR069342 RTDK1_6_D07.g1_A029 Roots, dark Pinu... 54 1e-005
gb|DR069884.1|DR069884 RTDK1_10_B03.b1_A029 Roots, dark Pin... 54 1e-005
gb|DR080782.1|DR080782 RTFEPL1_25_E05.b1_A029 Roots plus ad... 54 1e-005
gb|DR099866.1|DR099866 STRR1_59_F07.b1_A033 Stem Response R... 54 1e-005
gb|DR100033.1|DR100033 STRR1_61_C09.b1_A033 Stem Response R... 54 1e-005
gb|DT638665.1|DT638665 EST1153596 Normalized pine embryo li... 54 1e-005
gb|CO362345.1|CO362345 RTK1_3_B05.b1_A029 Roots minus potas... 52 4e-005
gb|CF669009.1|CF669009 RTCNT1_40_B07.b1_A029 Root control P... 48 7e-004
gb|CF669079.1|CF669079 RTCNT1_40_B07.g1_A029 Root control P... 48 7e-004
gb|CO169734.1|CO169734 NDL1_9_F07.b1_A029 Needles control P... 48 7e-004
gb|CO172566.1|CO172566 NDL1_30_B06.g1_A029 Needles control ... 48 7e-004
gb|DR024575.1|DR024575 STRS1_65_H09.g1_A034 Shoot tip pitch... 48 7e-004
gb|DR050746.1|DR050746 RTBOR1_25_A04.g1_A029 Roots plus add... 48 7e-004
gb|BG039747.1|BG039747 NXSI_103_D11_F NXSI (Nsf Xylem Side ... 42 0.043
gb|CF397628.1|CF397628 RTDS3_4_D09.g1_A022 Drought-stressed... 42 0.043
gb|CO171876.1|CO171876 NDL1_25_G07.b1_A029 Needles control ... 42 0.043
gb|CO171938.1|CO171938 NDL1_25_G07.g1_A029 Needles control ... 42 0.043
gb|DR072827.1|DR072827 RTDK1_28_G08.g1_A029 Roots, dark Pin... 42 0.043
gb|DR090566.1|DR090566 RTAL1_16_A10.b1_A029 Roots plus adde... 42 0.043
gb|DR090641.1|DR090641 RTAL1_16_A10.g1_A029 Roots plus adde... 42 0.043
gb|DR111159.1|DR111159 RTS1_15_F07.g1_A029 Roots minus sulf... 42 0.043
gb|DR683820.1|DR683820 EST1073896 Normalized pine embryo li... 42 0.043
gb|DR685459.1|DR685459 EST1075536 Normalized pine embryo li... 42 0.043
gb|DR694851.1|DR694851 EST1084944 Normalized pine embryo li... 42 0.043
>gb|BE123786.1|BE123786 NXNV_156_D04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_156_D04 5' similar to Arabidopsis thaliana
sequence At4g39330 cinnamyl-alcohol dehydrogenase CAD1
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 245
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 126 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 172
>gb|BF010579.1|BF010579 NXCI_086_D01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_086_D01 5' similar to Arabidopsis
thaliana sequence At1g72680 putative cinnamyl-alcohol
dehydrogenase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 201
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 49 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 95
>gb|BF186357.1|BF186357 NXCI_136_H08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_136_H08 5' similar to Arabidopsis
thaliana sequence At4g39330 cinnamyl-alcohol
dehydrogenase CAD1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 404
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 191 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 237
>gb|BI076958.1|BI076958 NXPV_085_C05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_085_C05 5' similar to Arabidopsis
thaliana sequence At4g39330 cinnamyl-alcohol
dehydrogenase CAD1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 491
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 408 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 454
>gb|CO166296.1|CO166296 FLD1_61_A03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_61_A03_A029 3', mRNA sequence
Length = 680
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 120 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 166
>gb|CO171526.1|CO171526 NDL1_22_B02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_22_B02_A029 5', mRNA sequence
Length = 400
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 113 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 159
>gb|CO175283.1|CO175283 NDL1_53_E04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_E04_A029 5', mRNA sequence
Length = 636
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 381 cttggtggtttgggacacatggctgtcaaatttggcaaagcttttgg 427
>gb|CO197987.1|CO197987 GEO1_10_B09.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_10_B09_A029 5', mRNA sequence
Length = 816
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 591 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 637
>gb|CO362430.1|CO362430 RTK1_3_B05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_3_B05_A029 5', mRNA sequence
Length = 774
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 567 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 521
>gb|CO363879.1|CO363879 RTK1_12_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_H06_A029 3', mRNA sequence
Length = 821
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 349 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 303
>gb|CO363973.1|CO363973 RTK1_12_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_H06_A029 5', mRNA sequence
Length = 746
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 583 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 537
>gb|CO366954.1|CO366954 RTK1_31_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_31_F04_A029 3', mRNA sequence
Length = 917
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 506 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 460
>gb|CO370342.1|CO370342 RTK1_67_F08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_F08_A029 3', mRNA sequence
Length = 761
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 180 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 226
>gb|CO370421.1|CO370421 RTK1_67_F08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_F08_A029 5', mRNA sequence
Length = 753
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 435 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 481
>gb|CV033406.1|CV033406 RTNACL1_34_G09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_34_G09_A029 3', mRNA sequence
Length = 763
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 155 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 201
>gb|CV033490.1|CV033490 RTNACL1_34_G09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_34_G09_A029 5', mRNA sequence
Length = 706
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 596 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 642
>gb|CV033837.1|CV033837 RTNACL1_36_H11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_H11_A029 5', mRNA sequence
Length = 702
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 624 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 670
>gb|CV036294.1|CV036294 RTNACL1_58_D08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_58_D08_A029 3', mRNA sequence
Length = 805
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 201 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 247
>gb|CV036353.1|CV036353 RTNACL1_58_D08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_58_D08_A029 5', mRNA sequence
Length = 719
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 591 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 637
>gb|CX646201.1|CX646201 COLD1_7_H09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_7_H09_A029 5', mRNA sequence
Length = 779
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 581 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 627
>gb|DR016802.1|DR016802 STRS1_12_F10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_F10_A034 3', mRNA sequence
Length = 831
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 250 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 296
>gb|DR016888.1|DR016888 STRS1_12_F10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_F10_A034 5', mRNA sequence
Length = 873
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 446 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 492
>gb|DR019851.1|DR019851 STRS1_32_G08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_32_G08_A034 5', mRNA sequence
Length = 724
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 586 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 632
>gb|DR024500.1|DR024500 STRS1_65_H09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_65_H09_A034 3', mRNA sequence
Length = 734
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 151 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 197
>gb|DR050437.1|DR050437 RTBOR1_23_B03.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_23_B03_A029 5', mRNA sequence
Length = 723
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 404 cttggtggtttgggacacatggctgtcaaatttggcaaagcttttgg 450
>gb|DR050667.1|DR050667 RTBOR1_25_A04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_A04_A029 3', mRNA sequence
Length = 667
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 67 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 113
>gb|DR052064.1|DR052064 RTCA1_2_E06.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_E06_A029 3', mRNA sequence
Length = 756
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 155 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 201
>gb|DR052143.1|DR052143 RTCA1_2_E06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_E06_A029 5', mRNA sequence
Length = 902
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 482 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 528
>gb|DR055426.1|DR055426 RTCA1_23_D05.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_23_D05_A029 5', mRNA sequence
Length = 664
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 592 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 638
>gb|DR060181.1|DR060181 RTNIT1_26_F02.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_F02_A029 3', mRNA sequence
Length = 683
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 100 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 146
>gb|DR060259.1|DR060259 RTNIT1_26_F02.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_F02_A029 5', mRNA sequence
Length = 743
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 594 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 640
>gb|DR069279.1|DR069279 RTDK1_6_D07.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_D07_A029 3', mRNA sequence
Length = 869
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 271 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 317
>gb|DR069342.1|DR069342 RTDK1_6_D07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_D07_A029 5', mRNA sequence
Length = 914
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 596 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 642
>gb|DR069884.1|DR069884 RTDK1_10_B03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_10_B03_A029 3', mRNA sequence
Length = 625
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 24 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 70
>gb|DR080782.1|DR080782 RTFEPL1_25_E05.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_25_E05_A029 3', mRNA sequence
Length = 717
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 254 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 300
>gb|DR099866.1|DR099866 STRR1_59_F07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_59_F07_A033 3', mRNA sequence
Length = 760
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 158 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 204
>gb|DR100033.1|DR100033 STRR1_61_C09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_C09_A033 3', mRNA sequence
Length = 779
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 178 cttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 224
>gb|DT638665.1|DT638665 EST1153596 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH89 3' end, mRNA sequence
Length = 845
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 657 cttggtggtttgggacacatggctgtcaaatttggcaaagcttttgg 703
>gb|CO362345.1|CO362345 RTK1_3_B05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_3_B05_A029 3', mRNA sequence
Length = 670
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 919 ttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
|||||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 93 ttggtggtttgggacacatggctgttaaatttggcaaagcttttgg 48
>gb|CF669009.1|CF669009 RTCNT1_40_B07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_40_B07_A029 3', mRNA sequence
Length = 708
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 921 ggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
|||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 108 ggtggtttgggacacatggctgttaaatttggcaaagcttttgg 151
>gb|CF669079.1|CF669079 RTCNT1_40_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_40_B07_A029 5', mRNA sequence
Length = 791
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 921 ggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
|||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 598 ggtggtttgggacacatggctgttaaatttggcaaagcttttgg 641
>gb|CO169734.1|CO169734 NDL1_9_F07.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_F07_A029 3', mRNA sequence
Length = 691
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 921 ggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
|||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 42 ggtggtttgggacacatggctgtcaaatttggcaaagcttttgg 85
>gb|CO172566.1|CO172566 NDL1_30_B06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_30_B06_A029 5', mRNA sequence
Length = 731
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 921 ggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
|||||| |||| ||||||||||| |||||||| ||||| |||||
Sbjct: 336 ggtggtttgggacacatggctgtcaaatttggcaaagcttttgg 379
>gb|DR024575.1|DR024575 STRS1_65_H09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_65_H09_A034 5', mRNA sequence
Length = 482
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaag 957
||||||||| |||| ||||||||||| |||||||| ||||
Sbjct: 443 cttggtggtttgggacacatggctgttaaatttggcaaag 482
>gb|DR050746.1|DR050746 RTBOR1_25_A04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_A04_A029 5', mRNA sequence
Length = 861
Score = 48.1 bits (24), Expect = 7e-004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagcatttgg 964
||||||||| |||| ||||||||||| |||||||| |||| |||||
Sbjct: 784 cttggtggtttgggacacatggctgttaaatttggncaagcttttgg 830
>gb|BG039747.1|BG039747 NXSI_103_D11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_D11 5' similar to Arabidopsis thaliana
sequence At4g39330 cinnamyl-alcohol dehydrogenase CAD1
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.043
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagc 958
||||| ||| |||| ||||||||||||||| |||| |||||
Sbjct: 106 cttggcggtttgggacacatggctgtgaaaattggaaaagc 146
>gb|CF397628.1|CF397628 RTDS3_4_D09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_4_D09_A022 5', mRNA sequence
Length = 718
Score = 42.1 bits (21), Expect = 0.043
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagc 958
||||| ||| |||| ||||||||||||||| |||| |||||
Sbjct: 675 cttggcggtttgggacacatggctgtgaaaattggaaaagc 715
>gb|CO171876.1|CO171876 NDL1_25_G07.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_25_G07_A029 3', mRNA sequence
Length = 817
Score = 42.1 bits (21), Expect = 0.043
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagc 958
||||| ||| |||| ||||||||||||||| |||| |||||
Sbjct: 107 cttggcggtttgggacacatggctgtgaaaattggaaaagc 147
>gb|CO171938.1|CO171938 NDL1_25_G07.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_25_G07_A029 5', mRNA sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.043
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagc 958
||||| ||| |||| ||||||||||||||| |||| |||||
Sbjct: 178 cttggcggtttgggacacatggctgtgaaaattggaaaagc 218
>gb|DR072827.1|DR072827 RTDK1_28_G08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_G08_A029 5', mRNA sequence
Length = 368
Score = 42.1 bits (21), Expect = 0.043
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 918 cttggtggtctgggtcacatggctgtgaaatttggtaaagc 958
||||| ||| |||| ||||||||||||||| |||| |||||
Sbjct: 44 cttggcggtttgggacacatggctgtgaaaattggaaaagc 84
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,924
Number of Sequences: 355925
Number of extensions: 97924
Number of successful extensions: 29001
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28928
Number of HSP's gapped (non-prelim): 73
length of query: 991
length of database: 217,277,237
effective HSP length: 19
effective length of query: 972
effective length of database: 210,514,662
effective search space: 204620251464
effective search space used: 204620251464
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)