BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485939.2.1
(530 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron... 52 2e-005
gb|DR109956.1|DR109956 RTS1_1_B02.b1_A029 Roots minus sulfu... 50 9e-005
gb|CO362724.1|CO362724 RTK1_5_A02.g1_A029 Roots minus potas... 48 4e-004
gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magn... 48 4e-004
gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iro... 48 4e-004
gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine ro... 46 0.001
gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed... 46 0.001
gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stresse... 46 0.001
gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed... 46 0.001
gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stresse... 46 0.001
gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 ... 46 0.001
gb|DR111182.1|DR111182 RTS1_16_A02.b1_A029 Roots minus sulf... 46 0.001
gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus p... 46 0.001
gb|AW064812.1|AW064812 ST36A12 Pine TriplEx shoot tip libra... 44 0.006
gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root w... 44 0.006
gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root w... 44 0.006
gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine ro... 44 0.006
gb|CF391868.1|CF391868 RTDR3_10_B04.g1_A022 Loblolly pine r... 44 0.006
gb|CF665728.1|CF665728 RTCNT1_18_C05.b1_A029 Root control P... 44 0.006
gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control P... 44 0.006
gb|DR023047.1|DR023047 STRS1_55_D09.b1_A034 Shoot tip pitch... 44 0.006
gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus add... 44 0.006
gb|DR069928.1|DR069928 RTDK1_10_F06.b1_A029 Roots, dark Pin... 44 0.006
gb|DR072123.1|DR072123 RTDK1_24_F01.b1_A029 Roots, dark Pin... 44 0.006
gb|DR072202.1|DR072202 RTDK1_24_F01.g1_A029 Roots, dark Pin... 44 0.006
gb|DR079868.1|DR079868 RTFEPL1_18_F11.b1_A029 Roots plus ad... 44 0.006
gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus ad... 44 0.006
gb|DR094442.1|DR094442 STRR1_14_D03.g1_A033 Stem Response R... 44 0.006
gb|DR386158.1|DR386158 RTHG1_13_G03.b1_A029 Roots plus adde... 44 0.006
gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine r... 42 0.022
gb|CF396127.1|CF396127 RTDS2_13_D06.g1_A021 Drought-stresse... 42 0.022
gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stresse... 42 0.022
gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control ... 42 0.022
gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2... 42 0.022
gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus pota... 42 0.022
gb|CO367106.1|CO367106 RTK1_32_E03.b1_A029 Roots minus pota... 42 0.022
gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus pota... 42 0.022
gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for... 42 0.022
gb|DR014845.1|DR014845 HEAT1_52_A11.b1_A029 Root at 37 C fo... 42 0.022
gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C fo... 42 0.022
gb|DR015213.1|DR015213 STRS1_2_D10.b1_A034 Shoot tip pitch ... 42 0.022
gb|DR015297.1|DR015297 STRS1_2_D10.g1_A034 Shoot tip pitch ... 42 0.022
gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch... 42 0.022
gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch... 42 0.022
gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch... 42 0.022
gb|DR059765.1|DR059765 RTNIT1_19_D08.g1_A029 Roots minus ni... 42 0.022
gb|DR099264.1|DR099264 STRR1_54_G08.b1_A033 Stem Response R... 42 0.022
gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response R... 42 0.022
gb|DR101912.1|DR101912 STRR1_76_E01.g1_A033 Stem Response R... 42 0.022
gb|DR161362.1|DR161362 RTFE1_11_H03.b1_A029 Roots minus iro... 42 0.022
gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iro... 42 0.022
gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side ... 40 0.089
gb|BQ654804.1|BQ654804 NXRV085_H06_F NXRV (Nsf Xylem Root w... 40 0.089
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 40 0.089
gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine r... 40 0.089
gb|CF387233.1|CF387233 RTDR1_11_B07.g1_A015 Loblolly pine r... 40 0.089
gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine ro... 40 0.089
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 40 0.089
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 40 0.089
gb|CF393923.1|CF393923 RTDS2_2_G07.b1_A021 Drought-stressed... 40 0.089
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 40 0.089
gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered lo... 40 0.089
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 40 0.089
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 40 0.089
gb|CF663690.1|CF663690 RTCNT1_4_C02.g1_A029 Root control Pi... 40 0.089
gb|BX679906.1|BX679906 BX679906 RS Pinus pinaster cDNA clon... 40 0.089
gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clon... 40 0.089
gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pin... 40 0.089
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 40 0.089
gb|CO162486.1|CO162486 FLD1_35_D02.g1_A029 Root flooded Pin... 40 0.089
gb|CO164694.1|CO164694 FLD1_49_E04.g1_A029 Root flooded Pin... 40 0.089
gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control ... 40 0.089
gb|CO198121.1|CO198121 GEO1_11_A02.g1_A029 Root gravitropis... 40 0.089
gb|CO361315.1|CO361315 NDL2_4_D03.b1_A029 Needles control 2... 40 0.089
gb|CO361397.1|CO361397 NDL2_4_D03.g1_A029 Needles control 2... 40 0.089
gb|CO367346.1|CO367346 RTK1_33_F05.g1_A029 Roots minus pota... 40 0.089
gb|CV034016.1|CV034016 RTNACL1_38_B11.b1_A029 Roots plus ad... 40 0.089
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 40 0.089
gb|CX646534.1|CX646534 COLD1_10_A05.b1_A029 Root cold Pinus... 40 0.089
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 40 0.089
gb|CX648339.1|CX648339 COLD1_28_B12.b1_A029 Root cold Pinus... 40 0.089
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 40 0.089
gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus... 40 0.089
gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch... 40 0.089
gb|DR057870.1|DR057870 RTNIT1_8_G05.b1_A029 Roots minus nit... 40 0.089
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 40 0.089
gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus ni... 40 0.089
gb|DR101544.1|DR101544 STRR1_74_C02.b1_A033 Stem Response R... 40 0.089
gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulf... 40 0.089
gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulf... 40 0.089
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 40 0.089
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 40 0.089
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 40 0.089
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 40 0.089
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 40 0.089
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 40 0.089
gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip libra... 38 0.35
gb|BX250447.1|BX250447 BX250447 Pinus pinaster differenciat... 38 0.35
gb|CF396247.1|CF396247 RTDS2_15_B11.g1_A021 Drought-stresse... 38 0.35
gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered lob... 38 0.35
gb|CF478238.1|CF478238 RTWW3_19_H07.g1_A022 Well-watered lo... 38 0.35
gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control P... 38 0.35
gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control ... 38 0.35
gb|CO361678.1|CO361678 NDL2_6_H01.b1_A029 Needles control 2... 38 0.35
gb|CO361758.1|CO361758 NDL2_6_H01.g1_A029 Needles control 2... 38 0.35
gb|CX646566.1|CX646566 COLD1_10_D06.b1_A029 Root cold Pinus... 38 0.35
gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calc... 38 0.35
gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus ni... 38 0.35
gb|DR070015.1|DR070015 RTDK1_10_F06.g1_A029 Roots, dark Pin... 38 0.35
gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response R... 38 0.35
gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response R... 38 0.35
gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfu... 38 0.35
gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magn... 38 0.35
gb|DR117678.1|DR117678 RTMG1_8_A10.g1_A029 Roots minus magn... 38 0.35
gb|DR117679.1|DR117679 RTMG1_8_A11.g1_A029 Roots minus magn... 38 0.35
gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iro... 38 0.35
gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo li... 38 0.35
gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus adde... 38 0.35
gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo li... 38 0.35
>gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G03_A029 5', mRNA sequence
Length = 760
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 397 ggaccgacaacgaggtcaagaactactggaactc 430
|||| ||||||||| |||||||||||||||||||
Sbjct: 345 ggacggacaacgagatcaagaactactggaactc 378
>gb|DR109956.1|DR109956 RTS1_1_B02.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_1_B02_A029 3', mRNA sequence
Length = 729
Score = 50.1 bits (25), Expect = 9e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 366 tggtccaggatcgcacggcacttgcctggcaggaccgacaacgaggtcaagaactactgg 425
||||||| ||| |||||||| | || |||||||| |||||||| ||||||||||||||
Sbjct: 623 tggtccaagattgcacggcaactcccaggcaggactgacaacgaaatcaagaactactgg 564
Query: 426 a 426
|
Sbjct: 563 a 563
>gb|CO362724.1|CO362724 RTK1_5_A02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_5_A02_A029 5', mRNA sequence
Length = 326
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||||| ||||| ||||| ||||||||
Sbjct: 197 cggcaagagctgcagactgcgatggataaactacct 232
>gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_G10_A029 5', mRNA sequence
Length = 805
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||||| ||||| ||||| ||||||||
Sbjct: 168 cggcaagagctgcagactgcgatggataaactacct 203
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 397 ggaccgacaacgaggtcaagaactactggaac 428
|||| ||||||||| | |||||||||||||||
Sbjct: 317 ggacggacaacgagataaagaactactggaac 348
>gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_D10_A029 5', mRNA sequence
Length = 766
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||||| ||||| ||||| ||||||||
Sbjct: 167 cggcaagagctgcagactgcgatggataaactacct 202
Score = 40.1 bits (20), Expect = 0.089
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 397 ggaccgacaacgaggtcaagaactactggaac 428
|||| ||||||||| | |||||||||||||||
Sbjct: 316 ggacggacaacgagataaagaactactggaac 347
>gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_E10_A022 5', mRNA
sequence
Length = 818
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaact 429
||||||||||| ||||||||||||||||||
Sbjct: 331 accgacaacgaaatcaagaactactggaact 361
>gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_4_B08_A021 5', mRNA sequence
Length = 493
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaact 429
||||||||||| ||||||||||||||||||
Sbjct: 345 accgacaacgaaatcaagaactactggaact 375
>gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_B07_A021 5', mRNA sequence
Length = 782
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaact 429
||||||||||| ||||||||||||||||||
Sbjct: 364 accgacaacgaaatcaagaactactggaact 394
>gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_C01_A022 5', mRNA sequence
Length = 598
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaact 429
||||||||||| ||||||||||||||||||
Sbjct: 330 accgacaacgaaatcaagaactactggaact 360
>gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_26_H01_A022 5', mRNA sequence
Length = 387
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaact 429
||||||||||| ||||||||||||||||||
Sbjct: 338 accgacaacgaactcaagaactactggaact 368
>gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_G06_A029 3', mRNA sequence
Length = 863
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 397 ggaccgacaacgaggtcaagaactactggaa 427
|||| ||||||||| ||||||||||||||||
Sbjct: 530 ggacggacaacgagatcaagaactactggaa 500
>gb|DR111182.1|DR111182 RTS1_16_A02.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_A02_A029 3', mRNA sequence
Length = 685
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 249 ggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||| ||||| ||||||||||||||||
Sbjct: 258 ggcaagagctgtaggcttaggtggatcaactacct 224
>gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_A06_A029 5', mRNA sequence
Length = 575
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 397 ggaccgacaacgaggtcaagaactactggaa 427
|||| ||||||||| ||||||||||||||||
Sbjct: 133 ggacggacaacgagatcaagaactactggaa 163
>gb|AW064812.1|AW064812 ST36A12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST36A12, mRNA sequence
Length = 574
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaa 427
||||||||||| ||||||||||||||
Sbjct: 19 gacaacgaggtaaagaactactggaa 44
>gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_D07 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 764
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactac 281
||||| |||||||| |||||||||||||||
Sbjct: 470 aagagttgcaggcttcggtggatcaactac 499
>gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_E09 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 742
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactac 281
||||| |||||||| |||||||||||||||
Sbjct: 476 aagagttgcaggcttcggtggatcaactac 505
>gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G04_A022 5', mRNA
sequence
Length = 480
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaa 427
||||||||| ||||||||||||||||
Sbjct: 399 gacaacgagatcaagaactactggaa 424
>gb|CF391868.1|CF391868 RTDR3_10_B04.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_B04_A022 5', mRNA
sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaa 427
||||||||||| ||||||||||||||
Sbjct: 365 gacaacgaggtaaagaactactggaa 390
>gb|CF665728.1|CF665728 RTCNT1_18_C05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_C05_A029 3', mRNA sequence
Length = 704
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactcg 431
||||||||| ||||||| ||||||||||||
Sbjct: 107 gacaacgagatcaagaattactggaactcg 136
>gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_A10_A029 3', mRNA sequence
Length = 655
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaactcg 431
||||||||| ||||||| ||||||||||||
Sbjct: 351 gacaacgagatcaagaattactggaactcg 322
>gb|DR023047.1|DR023047 STRS1_55_D09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_55_D09_A034 3', mRNA sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactcg 431
||||||||| ||||||| ||||||||||||
Sbjct: 39 gacaacgagatcaagaattactggaactcg 68
>gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_26_H05_A029 3', mRNA sequence
Length = 793
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 252 aagagctgcaggctgcggtggatcaactac 281
||||| |||||||| |||||||||||||||
Sbjct: 549 aagagttgcaggcttcggtggatcaactac 520
>gb|DR069928.1|DR069928 RTDK1_10_F06.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_10_F06_A029 3', mRNA sequence
Length = 794
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaa 427
||||||||||| ||||||||||||||
Sbjct: 411 gacaacgaggtaaagaactactggaa 386
>gb|DR072123.1|DR072123 RTDK1_24_F01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_24_F01_A029 3', mRNA sequence
Length = 741
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaa 427
||||||||||| ||||||||||||||
Sbjct: 357 gacaacgaggtaaagaactactggaa 332
>gb|DR072202.1|DR072202 RTDK1_24_F01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_24_F01_A029 5', mRNA sequence
Length = 682
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaa 427
||||||||||| ||||||||||||||
Sbjct: 681 gacaacgaggtaaagaactactggaa 656
>gb|DR079868.1|DR079868 RTFEPL1_18_F11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_F11_A029 3', mRNA sequence
Length = 745
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactcg 431
||||||||| ||||||| ||||||||||||
Sbjct: 140 gacaacgagatcaagaattactggaactcg 169
>gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_F11_A029 5', mRNA sequence
Length = 689
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactcg 431
||||||||| ||||||| ||||||||||||
Sbjct: 261 gacaacgagatcaagaattactggaactcg 290
>gb|DR094442.1|DR094442 STRR1_14_D03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_14_D03_A033 5', mRNA sequence
Length = 887
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaa 427
||||||||||| ||||||||||||||
Sbjct: 385 gacaacgaggtaaagaactactggaa 410
>gb|DR386158.1|DR386158 RTHG1_13_G03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_G03_A029 3', mRNA sequence
Length = 786
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaa 427
||||||||||| ||||||||||||||
Sbjct: 110 gacaacgaggtaaagaactactggaa 135
>gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_17_D12_A022 5', mRNA
sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 343 gacaacgagatcaaaaactactggaactc 371
>gb|CF396127.1|CF396127 RTDS2_13_D06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_13_D06_A021 5', mRNA sequence
Length = 801
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 777 gacaacgagatcaaaaactactggaactc 749
>gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_11_D09_A015 5', mRNA sequence
Length = 667
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 314 gacaacgagatcaaaaactactggaactc 342
>gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_G12_A029 5', mRNA sequence
Length = 769
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
|||||||| |||||||||||||||||||
Sbjct: 345 gacaacgaaatcaagaactactggaactc 373
>gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_C06_A029 5', mRNA sequence
Length = 840
Score = 42.1 bits (21), Expect = 0.022
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 388 tgcctggcaggaccgacaacgaggtcaagaactactggaac 428
||||||| |||| |||||||| |||||||||||||||||
Sbjct: 258 tgcctggtcggacagacaacgaaatcaagaactactggaac 298
>gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_18_A01_A029 5', mRNA sequence
Length = 812
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 262 gacaacgagatcaaaaactactggaactc 290
>gb|CO367106.1|CO367106 RTK1_32_E03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_E03_A029 3', mRNA sequence
Length = 867
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 105 gacaacgagatcaaaaactactggaactc 133
>gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_E03_A029 5', mRNA sequence
Length = 873
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 316 gacaacgagatcaaaaactactggaactc 344
>gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_A03_A029 3', mRNA sequence
Length = 790
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 481 gacaacgagatcaaaaactactggaactc 453
>gb|DR014845.1|DR014845 HEAT1_52_A11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_A11_A029 3', mRNA sequence
Length = 785
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 25 gacaacgagatcaaaaactactggaactc 53
>gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_A11_A029 5', mRNA sequence
Length = 854
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 265 gacaacgagatcaaaaactactggaactc 293
>gb|DR015213.1|DR015213 STRS1_2_D10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_D10_A034 3', mRNA sequence
Length = 787
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 27 gacaacgagatcaaaaactactggaactc 55
>gb|DR015297.1|DR015297 STRS1_2_D10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_D10_A034 5', mRNA sequence
Length = 871
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 97 gacaacgagatcaaaaactactggaactc 125
>gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_G12_A034 3', mRNA sequence
Length = 799
Score = 42.1 bits (21), Expect = 0.022
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 388 tgcctggcaggaccgacaacgaggtcaagaactactggaac 428
||||||| |||| || |||||| |||||||||||||||||
Sbjct: 150 tgcctgggcggacagataacgagatcaagaactactggaac 190
>gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_G12_A034 5', mRNA sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.022
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 388 tgcctggcaggaccgacaacgaggtcaagaactactggaac 428
||||||| |||| || |||||| |||||||||||||||||
Sbjct: 304 tgcctgggcggacagataacgagatcaagaactactggaac 344
>gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_55_A05_A034 5', mRNA sequence
Length = 752
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 321 gacaacgagatcaaaaactactggaactc 349
>gb|DR059765.1|DR059765 RTNIT1_19_D08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_19_D08_A029 5', mRNA sequence
Length = 832
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 726 gacaacgagatcaaaaactactggaactc 698
>gb|DR099264.1|DR099264 STRR1_54_G08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_G08_A033 3', mRNA sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 29 gacaacgagatcaaaaactactggaactc 57
>gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_G08_A033 5', mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 291 gacaacgagatcaaaaactactggaactc 319
>gb|DR101912.1|DR101912 STRR1_76_E01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_E01_A033 5', mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.022
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 397 ggaccgacaacgaggtcaagaactactggaact 429
|||| ||||||||| | ||||||||||||||||
Sbjct: 5 ggacggacaacgagataaagaactactggaact 37
>gb|DR161362.1|DR161362 RTFE1_11_H03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_11_H03_A029 3', mRNA sequence
Length = 778
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
||||||||| |||| ||||||||||||||
Sbjct: 19 gacaacgagatcaaaaactactggaactc 47
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,641
Number of Sequences: 355925
Number of extensions: 59641
Number of successful extensions: 21076
Number of sequences better than 0.5: 119
Number of HSP's better than 0.5 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20888
Number of HSP's gapped (non-prelim): 188
length of query: 530
length of database: 217,277,237
effective HSP length: 19
effective length of query: 511
effective length of database: 210,514,662
effective search space: 107572992282
effective search space used: 107572992282
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)