BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485885.2.1
(1063 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF478552.1|CF478552 RTWW3_20_C12.g1_A022 Well-watered lo... 46 0.003
gb|BX680290.1|BX680290 BX680290 RS Pinus pinaster cDNA clon... 46 0.003
gb|CO367803.1|CO367803 RTK1_36_E12.g1_A029 Roots minus pota... 46 0.003
gb|DR160864.1|DR160864 RTFE1_8_B03.g1_A029 Roots minus iron... 46 0.003
gb|DR386533.1|DR386533 RTHG1_15_G09.g1_A029 Roots plus adde... 46 0.003
gb|DR387845.1|DR387845 RTHG1_24_B07.g2_A029 Roots plus adde... 46 0.003
gb|CF670941.1|CF670941 RTCNT1_53_D05.g1_A029 Root control P... 44 0.012
gb|DR101617.1|DR101617 STRR1_74_C11.g1_A033 Stem Response R... 44 0.012
dbj|BD224444.1| Materials and methods for the modification ... 44 0.012
gb|BF517950.1|BF517950 NXSI_032_A05_F NXSI (Nsf Xylem Side ... 40 0.18
gb|BQ702864.1|BQ702864 NXSI_133_F03_F NXSI (Nsf Xylem Side ... 40 0.18
gb|CD025716.1|CD025716 NXSI_075_G05_F NXSI (Nsf Xylem Side ... 40 0.18
gb|CF393653.1|CF393653 RTDR3_15_B07.g1_A022 Loblolly pine r... 40 0.18
gb|CO161650.1|CO161650 FLD1_30_F08.b1_A029 Root flooded Pin... 40 0.18
gb|CO161727.1|CO161727 FLD1_30_F08.g1_A029 Root flooded Pin... 40 0.18
gb|CO175549.1|CO175549 NDL1_55_B04.g1_A029 Needles control ... 40 0.18
gb|DR091543.1|DR091543 RTAL1_22_H02.b1_A029 Roots plus adde... 40 0.18
>gb|CF478552.1|CF478552 RTWW3_20_C12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_C12_A022 5', mRNA sequence
Length = 723
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 226 gggcatcgattcctgtgggtgctgcgc 252
|||||||| ||||||||||||||||||
Sbjct: 308 gggcatcgcttcctgtgggtgctgcgc 334
>gb|BX680290.1|BX680290 BX680290 RS Pinus pinaster cDNA clone RS41F11, mRNA sequence
Length = 605
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 226 gggcatcgattcctgtgggtgctgcgc 252
|||||||| ||||||||||||||||||
Sbjct: 523 gggcatcgcttcctgtgggtgctgcgc 549
>gb|CO367803.1|CO367803 RTK1_36_E12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_E12_A029 5', mRNA sequence
Length = 828
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 226 gggcatcgattcctgtgggtgctgcgc 252
|||||||| ||||||||||||||||||
Sbjct: 821 gggcatcgcttcctgtgggtgctgcgc 795
>gb|DR160864.1|DR160864 RTFE1_8_B03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_8_B03_A029 5', mRNA sequence
Length = 918
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 226 gggcatcgattcctgtgggtgctgcgc 252
|||||||| ||||||||||||||||||
Sbjct: 164 gggcatcgcttcctgtgggtgctgcgc 190
>gb|DR386533.1|DR386533 RTHG1_15_G09.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_15_G09_A029 5', mRNA sequence
Length = 773
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 226 gggcatcgattcctgtgggtgctgcgc 252
|||||||| ||||||||||||||||||
Sbjct: 98 gggcatcgcttcctgtgggtgctgcgc 124
>gb|DR387845.1|DR387845 RTHG1_24_B07.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_B07_A029 5', mRNA sequence
Length = 585
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 226 gggcatcgattcctgtgggtgctgcgc 252
|||||||| ||||||||||||||||||
Sbjct: 445 gggcatcgcttcctgtgggtgctgcgc 471
>gb|CF670941.1|CF670941 RTCNT1_53_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_D05_A029 5', mRNA sequence
Length = 438
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 226 gggcatcgattcctgtgggtgctgcg 251
|||||||| |||||||||||||||||
Sbjct: 413 gggcatcgcttcctgtgggtgctgcg 438
>gb|DR101617.1|DR101617 STRR1_74_C11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C11_A033 5', mRNA sequence
Length = 717
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 221 gcagcgggcatcgattcctgtgggtgctgcgcgg 254
||||||||||||| ||||||||||| || |||||
Sbjct: 525 gcagcgggcatcgtttcctgtgggttctccgcgg 558
>dbj|BD224444.1| Materials and methods for the modification of plant lignin content
Length = 330
Score = 44.1 bits (22), Expect = 0.012
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 221 gcagcgggcatcgattcctgtgggtgctgcgcgg 254
||||||||||||| ||||||||||| || |||||
Sbjct: 27 gcagcgggcatcgtttcctgtgggttctccgcgg 60
>gb|BF517950.1|BF517950 NXSI_032_A05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_032_A05 5' similar to Arabidopsis thaliana
sequence At3g16520 glucosyltransferase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 252
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 229 catcgattcctgtgggtgctgcgc 252
||||||||||||||||| ||||||
Sbjct: 56 catcgattcctgtgggtactgcgc 79
>gb|BQ702864.1|BQ702864 NXSI_133_F03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_133_F03 5' similar to Arabidopsis thaliana
sequence At1g01390 flavonol 3-o-glucosyltransferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 405
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 229 catcgattcctgtgggtgctgcgc 252
||||||||||||||||| ||||||
Sbjct: 56 catcgattcctgtgggtactgcgc 79
>gb|CD025716.1|CD025716 NXSI_075_G05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_075_G05 5', mRNA sequence
Length = 105
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 229 catcgattcctgtgggtgctgcgc 252
||||||||||||||||| ||||||
Sbjct: 56 catcgattcctgtgggtactgcgc 79
>gb|CF393653.1|CF393653 RTDR3_15_B07.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_15_B07_A022 5', mRNA
sequence
Length = 778
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 229 catcgattcctgtgggtgctgcgc 252
||||||||||||||||| ||||||
Sbjct: 433 catcgattcctgtgggtactgcgc 456
>gb|CO161650.1|CO161650 FLD1_30_F08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_30_F08_A029 3', mRNA sequence
Length = 851
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 229 catcgattcctgtgggtgctgcgc 252
||||| ||||||||||||||||||
Sbjct: 632 catcgcttcctgtgggtgctgcgc 609
>gb|CO161727.1|CO161727 FLD1_30_F08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_30_F08_A029 5', mRNA sequence
Length = 842
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 229 catcgattcctgtgggtgctgcgc 252
||||| ||||||||||||||||||
Sbjct: 777 catcgcttcctgtgggtgctgcgc 754
>gb|CO175549.1|CO175549 NDL1_55_B04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_55_B04_A029 5', mRNA sequence
Length = 790
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 221 gcagcgggcatcgattcctgtggg 244
||||||||||||| ||||||||||
Sbjct: 166 gcagcgggcatcgtttcctgtggg 189
>gb|DR091543.1|DR091543 RTAL1_22_H02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_H02_A029 3', mRNA sequence
Length = 828
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 229 catcgattcctgtgggtgctgcgc 252
||||||||||||||||| ||||||
Sbjct: 130 catcgattcctgtgggtactgcgc 153
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,722
Number of Sequences: 355925
Number of extensions: 99722
Number of successful extensions: 28096
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28070
Number of HSP's gapped (non-prelim): 26
length of query: 1063
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1044
effective length of database: 210,514,662
effective search space: 219777307128
effective search space used: 219777307128
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)