BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478398.2.5
(1385 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG317931.1|BG317931 NXPV_007_D11_F NXPV (Nsf Xylem Plani... 149 4e-034
gb|BG317951.1|BG317951 NXPV_007_G05_F NXPV (Nsf Xylem Plani... 149 4e-034
gb|BG318137.1|BG318137 NXPV_010_H05_F NXPV (Nsf Xylem Plani... 149 4e-034
gb|BQ698130.1|BQ698130 NXPV_064_H04_F NXPV (Nsf Xylem Plani... 149 4e-034
gb|CF401717.1|CF401717 RTWW1_14_C08.g1_A015 Well-watered lo... 149 4e-034
gb|CF402018.1|CF402018 RTWW1_16_A09.g1_A015 Well-watered lo... 149 4e-034
gb|CF402933.1|CF402933 RTWW1_23_G02.g1_A015 Well-watered lo... 149 4e-034
gb|CN784761.1|CN784761 EST783452 Sequencing ESTs from loblo... 149 4e-034
gb|CN784778.1|CN784778 EST783469 Sequencing ESTs from loblo... 149 4e-034
gb|CO159784.1|CO159784 FLD1_15_H03.g1_A029 Root flooded Pin... 149 4e-034
gb|CO163029.1|CO163029 FLD1_39_B07.b1_A029 Root flooded Pin... 149 4e-034
gb|CO163108.1|CO163108 FLD1_39_B07.g1_A029 Root flooded Pin... 149 4e-034
gb|CO176699.1|CO176699 NDL1_63_D10.g1_A029 Needles control ... 149 4e-034
gb|CO409013.1|CO409013 EST839398 Sequencing ESTs from loblo... 149 4e-034
gb|CO414085.1|CO414085 EST844470 Sequencing ESTs from loblo... 149 4e-034
gb|CV137468.1|CV137468 EST848677 Sequencing ESTs from loblo... 149 4e-034
gb|CV146400.1|CV146400 EST857609 Sequencing ESTs from loblo... 149 4e-034
gb|CV146771.1|CV146771 EST857980 Sequencing ESTs from loblo... 149 4e-034
gb|DN453630.1|DN453630 EST949429 Sequencing ESTs from loblo... 149 4e-034
gb|DN454863.1|DN454863 EST950662 Sequencing ESTs from loblo... 149 4e-034
gb|DN458835.1|DN458835 EST954634 Sequencing ESTs from loblo... 149 4e-034
gb|DR012793.1|DR012793 HEAT1_15_C04.b1_A029 Root at 37 C fo... 149 4e-034
gb|DR012876.1|DR012876 HEAT1_15_C04.g1_A029 Root at 37 C fo... 149 4e-034
gb|DR016530.1|DR016530 STRS1_10_E01.g1_A034 Shoot tip pitch... 149 4e-034
gb|DR020451.1|DR020451 STRS1_37_C11.b1_A034 Shoot tip pitch... 149 4e-034
gb|DR020527.1|DR020527 STRS1_37_C11.g1_A034 Shoot tip pitch... 149 4e-034
gb|DR071853.1|DR071853 RTDK1_22_B04.g1_A029 Roots, dark Pin... 149 4e-034
gb|DR093869.1|DR093869 STRR1_10_H08.g1_A033 Stem Response R... 149 4e-034
gb|DR120870.1|DR120870 RTMG1_32_B05.g1_A029 Roots minus mag... 149 4e-034
gb|DR693530.1|DR693530 EST1083618 Normalized pine embryo li... 149 4e-034
gb|DT625596.1|DT625596 EST1157520 Sequencing ESTs from lobl... 149 4e-034
gb|BG039333.1|BG039333 NXSI_097_H05_F NXSI (Nsf Xylem Side ... 147 1e-033
gb|CX649065.1|CX649065 COLD1_32_F03.g1_A029 Root cold Pinus... 147 1e-033
gb|CF389668.1|CF389668 RTDR2_8_D04.g1_A021 Loblolly pine ro... 141 9e-032
gb|CV147831.1|CV147831 EST859040 Sequencing ESTs from loblo... 141 9e-032
gb|DR387294.1|DR387294 RTHG1_20_F12.g1_A029 Roots plus adde... 141 9e-032
gb|DR684083.1|DR684083 EST1074160 Normalized pine embryo li... 141 9e-032
gb|BM428463.1|BM428463 NXRV_016_H11_F NXRV (Nsf Xylem Root ... 139 3e-031
gb|CO162832.1|CO162832 FLD1_37_F11.g1_A029 Root flooded Pin... 139 3e-031
gb|DR093692.1|DR093692 STRR1_9_G05.g1_A033 Stem Response Re... 139 3e-031
gb|CF401229.1|CF401229 RTWW1_11_G01.b1_A015 Well-watered lo... 137 1e-030
gb|CF402602.1|CF402602 RTWW1_21_D11.g1_A015 Well-watered lo... 137 1e-030
gb|CF398489.1|CF398489 RTDS3_15_F05.b1_A022 Drought-stresse... 133 2e-029
gb|DT631216.1|DT631216 EST1146147 Normalized pine embryo li... 133 2e-029
gb|CF398158.1|CF398158 RTDS3_21_F07.g1_A022 Drought-stresse... 127 1e-027
gb|CF400393.1|CF400393 RTWW1_5_E07.b1_A015 Well-watered lob... 125 5e-027
gb|CO159714.1|CO159714 FLD1_15_H03.b1_A029 Root flooded Pin... 121 8e-026
gb|DR017539.1|DR017539 STRS1_17_A01.b1_A034 Shoot tip pitch... 121 8e-026
gb|DR093781.1|DR093781 STRR1_10_H08.b1_A033 Stem Response R... 121 8e-026
gb|BQ696960.1|BQ696960 NXPV_047_D03_F NXPV (Nsf Xylem Plani... 113 2e-023
gb|CF398111.1|CF398111 RTDS3_21_F07.b1_A022 Drought-stresse... 113 2e-023
gb|BE241217.1|BE241217 NXNV_180_E12_F Nsf Xylem Normal wood... 109 3e-022
gb|DR682722.1|DR682722 EST1072797 Normalized pine embryo li... 107 1e-021
gb|DT637220.1|DT637220 EST1152151 Normalized pine embryo li... 98 1e-018
gb|DR692348.1|DR692348 EST1082436 Normalized pine embryo li... 94 2e-017
gb|CF402516.1|CF402516 RTWW1_21_D11.b1_A015 Well-watered lo... 92 7e-017
gb|DR688636.1|DR688636 EST1078721 Normalized pine embryo li... 90 3e-016
gb|DR691152.1|DR691152 EST1081238 Normalized pine embryo li... 90 3e-016
gb|DR091932.1|DR091932 RTAL1_25_A05.b1_A029 Roots plus adde... 86 4e-015
gb|DN615294.1|DN615294 EST968344 Subtracted pine embryo lib... 80 3e-013
gb|BG275719.1|BG275719 NXSI_145_A05_F NXSI (Nsf Xylem Side ... 76 4e-012
gb|DR053493.1|DR053493 RTCA1_11_B08.g1_A029 Roots minus cal... 70 3e-010
gb|DR024929.1|DR024929 STRS1_68_A09.g1_A034 Shoot tip pitch... 64 2e-008
gb|DR384643.1|DR384643 RTHG1_3_C12.g1_A029 Roots plus added... 60 3e-007
gb|DR684847.1|DR684847 EST1074924 Normalized pine embryo li... 54 2e-005
gb|DR685606.1|DR685606 EST1075683 Normalized pine embryo li... 54 2e-005
gb|DT632279.1|DT632279 EST1147210 Normalized pine embryo li... 54 2e-005
gb|DT633058.1|DT633058 EST1147989 Normalized pine embryo li... 54 2e-005
gb|DR090610.1|DR090610 RTAL1_16_F06.b1_A029 Roots plus adde... 50 2e-004
gb|BM133791.1|BM133791 NXLV_012_C09_F NXLV (Nsf Xylem Late ... 40 0.24
gb|CF398578.1|CF398578 RTDS3_15_F05.g1_A022 Drought-stresse... 40 0.24
gb|CF401692.1|CF401692 RTWW1_14_C08.b1_A015 Well-watered lo... 40 0.24
gb|CF402851.1|CF402851 RTWW1_23_G02.b1_A015 Well-watered lo... 40 0.24
gb|BX682865.1|BX682865 BX682865 Pinus pinaster differenciat... 40 0.24
gb|CO176619.1|CO176619 NDL1_63_D10.b1_A029 Needles control ... 40 0.24
gb|CO368006.1|CO368006 RTK1_38_C02.b1_A029 Roots minus pota... 40 0.24
gb|CO368087.1|CO368087 RTK1_38_C02.g1_A029 Roots minus pota... 40 0.24
gb|DN632311.1|DN632311 EST983127 Subtracted pine embryo lib... 40 0.24
gb|DN633582.1|DN633582 EST984398 Subtracted pine embryo lib... 40 0.24
gb|DR025245.1|DR025245 STRS1_70_B03.g1_A034 Shoot tip pitch... 40 0.24
gb|DR090487.1|DR090487 RTAL1_15_H06.b1_A029 Roots plus adde... 40 0.24
>gb|BG317931.1|BG317931 NXPV_007_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_007_D11 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 577
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 74 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 133
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 134 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 193
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 194 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 253
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 254 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 313
Query: 606 gag 608
|||
Sbjct: 314 gag 316
>gb|BG317951.1|BG317951 NXPV_007_G05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_007_G05 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 550
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 74 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 133
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 134 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 193
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 194 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 253
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 254 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 313
Query: 606 gag 608
|||
Sbjct: 314 gag 316
>gb|BG318137.1|BG318137 NXPV_010_H05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_H05 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 557
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 74 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 133
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 134 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 193
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 194 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 253
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 254 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 313
Query: 606 gag 608
|||
Sbjct: 314 gag 316
>gb|BQ698130.1|BQ698130 NXPV_064_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_064_H04 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 512
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 74 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 133
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 134 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 193
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 194 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 253
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 254 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 313
Query: 606 gag 608
|||
Sbjct: 314 gag 316
>gb|CF401717.1|CF401717 RTWW1_14_C08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C08_A015 5', mRNA sequence
Length = 847
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 186 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 245
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 246 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 305
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 306 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 365
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 366 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 425
Query: 606 gag 608
|||
Sbjct: 426 gag 428
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 615 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 674
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 675 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 730
>gb|CF402018.1|CF402018 RTWW1_16_A09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_A09_A015 5', mRNA sequence
Length = 760
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 81 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 140
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 141 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 200
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 201 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 260
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 261 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 320
Query: 606 gag 608
|||
Sbjct: 321 gag 323
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 510 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 569
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 570 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 625
>gb|CF402933.1|CF402933 RTWW1_23_G02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_23_G02_A015 5', mRNA sequence
Length = 517
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 91 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 150
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 151 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 210
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 211 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 270
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 271 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 330
Query: 606 gag 608
|||
Sbjct: 331 gag 333
>gb|CN784761.1|CN784761 EST783452 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAQ21 5' end, mRNA sequence
Length = 889
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 217 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 276
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 277 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 336
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 337 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 396
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 397 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 456
Query: 606 gag 608
|||
Sbjct: 457 gag 459
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 646 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 705
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 706 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 761
>gb|CN784778.1|CN784778 EST783469 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAQ44 5' end, mRNA sequence
Length = 909
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 331 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 390
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 391 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 450
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 451 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 510
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 511 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 570
Query: 606 gag 608
|||
Sbjct: 571 gag 573
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 760 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 819
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 820 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 875
>gb|CO159784.1|CO159784 FLD1_15_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_H03_A029 5', mRNA sequence
Length = 821
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 237 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 296
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 297 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 356
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 357 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 416
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 417 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 476
Query: 606 gag 608
|||
Sbjct: 477 gag 479
>gb|CO163029.1|CO163029 FLD1_39_B07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_B07_A029 3', mRNA sequence
Length = 861
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 51 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 110
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 111 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 170
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 171 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 230
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 231 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 290
Query: 606 gag 608
|||
Sbjct: 291 gag 293
>gb|CO163108.1|CO163108 FLD1_39_B07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_B07_A029 5', mRNA sequence
Length = 888
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 203 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 262
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 263 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 322
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 323 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 382
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 383 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 442
Query: 606 gag 608
|||
Sbjct: 443 gag 445
>gb|CO176699.1|CO176699 NDL1_63_D10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_63_D10_A029 5', mRNA sequence
Length = 781
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 472 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 531
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 532 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 591
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 592 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 651
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 652 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 711
Query: 606 gag 608
|||
Sbjct: 712 gag 714
>gb|CO409013.1|CO409013 EST839398 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKK24 5' end, mRNA sequence
Length = 958
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 510 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 569
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 570 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 629
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 630 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 689
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 690 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 749
Query: 606 gag 608
|||
Sbjct: 750 gag 752
>gb|CO414085.1|CO414085 EST844470 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMJ59 5' end, mRNA sequence
Length = 760
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 510 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 569
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 570 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 629
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 630 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 689
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 690 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 749
Query: 606 gag 608
|||
Sbjct: 750 gag 752
>gb|CV137468.1|CV137468 EST848677 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAO87 5' end, mRNA sequence
Length = 850
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 371 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 430
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 431 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 490
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 491 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 550
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 551 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 610
Query: 606 gag 608
|||
Sbjct: 611 gag 613
>gb|CV146400.1|CV146400 EST857609 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDV92 5' end, mRNA sequence
Length = 863
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 531 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 590
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 591 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 650
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 651 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 710
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 711 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 770
Query: 606 gag 608
|||
Sbjct: 771 gag 773
>gb|CV146771.1|CV146771 EST857980 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIE012 5' end, mRNA sequence
Length = 853
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 517 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 576
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 577 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 636
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 637 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 696
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 697 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 756
Query: 606 gag 608
|||
Sbjct: 757 gag 759
>gb|DN453630.1|DN453630 EST949429 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFU82 5' end, mRNA sequence
Length = 852
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 329 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 388
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 389 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 448
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 449 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 508
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 509 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 568
Query: 606 gag 608
|||
Sbjct: 569 gag 571
>gb|DN454863.1|DN454863 EST950662 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG814 5' end, mRNA sequence
Length = 782
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 530 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 589
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 590 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 649
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 650 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 709
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 710 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 769
Query: 606 gag 608
|||
Sbjct: 770 gag 772
>gb|DN458835.1|DN458835 EST954634 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHG33 5' end, mRNA sequence
Length = 948
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 464 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 523
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 524 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 583
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 584 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 643
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 644 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 703
Query: 606 gag 608
|||
Sbjct: 704 gag 706
>gb|DR012793.1|DR012793 HEAT1_15_C04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_C04_A029 3', mRNA sequence
Length = 784
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 59 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 118
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 119 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 178
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 179 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 238
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 239 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 298
Query: 606 gag 608
|||
Sbjct: 299 gag 301
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 488 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 547
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 548 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 603
>gb|DR012876.1|DR012876 HEAT1_15_C04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_C04_A029 5', mRNA sequence
Length = 775
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 117 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 176
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 177 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 236
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 237 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 296
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 297 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 356
Query: 606 gag 608
|||
Sbjct: 357 gag 359
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 546 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 605
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 606 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 661
>gb|DR016530.1|DR016530 STRS1_10_E01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_10_E01_A034 5', mRNA sequence
Length = 798
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 503 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 562
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 563 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 622
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 623 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 682
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 683 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacataat 742
Query: 606 gag 608
|||
Sbjct: 743 gag 745
>gb|DR020451.1|DR020451 STRS1_37_C11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_C11_A034 3', mRNA sequence
Length = 856
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Minus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 711 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 652
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 651 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 592
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 591 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 532
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 531 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 472
Query: 606 gag 608
|||
Sbjct: 471 gag 469
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 282 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 223
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 222 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 167
>gb|DR020527.1|DR020527 STRS1_37_C11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_C11_A034 5', mRNA sequence
Length = 755
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Minus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 689 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 630
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 629 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 570
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 569 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 510
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 509 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 450
Query: 606 gag 608
|||
Sbjct: 449 gag 447
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 260 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 201
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 200 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 145
>gb|DR071853.1|DR071853 RTDK1_22_B04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_B04_A029 5', mRNA sequence
Length = 775
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Minus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 740 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 681
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 680 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 621
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 620 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 561
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 560 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 501
Query: 606 gag 608
|||
Sbjct: 500 gag 498
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 311 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 252
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 251 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 196
>gb|DR093869.1|DR093869 STRR1_10_H08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_H08_A033 5', mRNA sequence
Length = 845
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 184 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 243
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 244 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 303
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 304 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 363
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 364 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 423
Query: 606 gag 608
|||
Sbjct: 424 gag 426
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 613 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 672
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 673 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 728
>gb|DR120870.1|DR120870 RTMG1_32_B05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_B05_A029 5', mRNA sequence
Length = 848
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 87 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 146
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 147 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 206
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 207 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 266
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 267 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 326
Query: 606 gag 608
|||
Sbjct: 327 gag 329
>gb|DR693530.1|DR693530 EST1083618 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE050 3' end, mRNA sequence
Length = 749
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 499 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 558
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 559 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 618
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 619 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 678
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 679 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 738
Query: 606 gag 608
|||
Sbjct: 739 gag 741
>gb|DT625596.1|DT625596 EST1157520 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA165 5' end, mRNA sequence
Length = 849
Score = 149 bits (75), Expect = 4e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 510 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 569
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 570 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 629
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 630 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 689
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 690 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 749
Query: 606 gag 608
|||
Sbjct: 750 gag 752
>gb|BG039333.1|BG039333 NXSI_097_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_097_H05 5' similar to Arabidopsis thaliana
sequence At2g44680 putative casein kinase II beta
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 536
Score = 147 bits (74), Expect = 1e-033
Identities = 194/234 (82%)
Strand = Plus / Plus
Query: 375 gatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatgg 434
||||| |||| ||||||||| || || ||||||||||| ||||| || ||||| || |||
Sbjct: 9 gatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttgg 68
Query: 435 tattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagac 494
| || || |||||||| ||||||||||| |||||||| |||||||| |||||||| ||
Sbjct: 69 ttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggat 128
Query: 495 gacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctc 554
|| |||||||||||||| || || ||||||||||| || ||||||||||| || || ||
Sbjct: 129 gatttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctg 188
Query: 555 attttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgag 608
||||| ||| | || |||||| ||| |||||| || || |||||||| ||||||
Sbjct: 189 attttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaatgag 242
>gb|CX649065.1|CX649065 COLD1_32_F03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_32_F03_A029 5', mRNA sequence
Length = 766
Score = 147 bits (74), Expect = 1e-033
Identities = 194/234 (82%)
Strand = Plus / Plus
Query: 375 gatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatgg 434
||||| |||| ||||||||| || || ||||||||||| ||||| || ||||| || |||
Sbjct: 26 gatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctggatctcttgg 85
Query: 435 tattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagac 494
| || || |||||||| ||||||||||| |||||||| |||||||| |||||||| ||
Sbjct: 86 ttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggat 145
Query: 495 gacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctc 554
|| |||||||||||||| || || ||||||||||| || ||||||||||| || || ||
Sbjct: 146 gatttcaacctttgtggacttagtagccaagttccatactatgattatgcacttgacctg 205
Query: 555 attttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgag 608
||||| ||| | || |||||| ||| |||||| || || |||||||| ||||||
Sbjct: 206 attttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaatgag 259
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 446 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 505
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 506 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 561
>gb|CF389668.1|CF389668 RTDR2_8_D04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_D04_A021 5', mRNA
sequence
Length = 630
Score = 141 bits (71), Expect = 9e-032
Identities = 194/235 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 396 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 455
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 456 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 515
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 516 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 575
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaac 600
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||
Sbjct: 576 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaac 630
>gb|CV147831.1|CV147831 EST859040 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEB58 5' end, mRNA sequence
Length = 931
Score = 141 bits (71), Expect = 9e-032
Identities = 200/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 350 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 409
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| ||| |||| |||||||| |||
Sbjct: 410 atctcttggttctgtaatttaagaggcaatgagttcttttgtaaagttgatgatgagtac 469
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 470 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 529
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 530 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 589
Query: 606 gag 608
|||
Sbjct: 590 gag 592
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 779 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 838
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 839 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 894
>gb|DR387294.1|DR387294 RTHG1_20_F12.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_20_F12_A029 5', mRNA sequence
Length = 804
Score = 141 bits (71), Expect = 9e-032
Identities = 200/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 229 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 288
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 289 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 348
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||| | || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 349 atttaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 408
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 409 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 468
Query: 606 gag 608
|||
Sbjct: 469 gag 471
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 658 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 717
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 718 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 773
>gb|DR684083.1|DR684083 EST1074160 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO70 3' end, mRNA sequence
Length = 751
Score = 141 bits (71), Expect = 9e-032
Identities = 200/243 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 488 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 547
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 548 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 607
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || || ||||||||
Sbjct: 608 attcaggatgatttcaacctttgtggacttagtagccaagttccatactacgattatgca 667
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaacaaaat 605
|| || || ||||| ||| | || |||||| ||| |||||| || || |||||||| |||
Sbjct: 668 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaacagaat 727
Query: 606 gag 608
|||
Sbjct: 728 gag 730
>gb|BM428463.1|BM428463 NXRV_016_H11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_016_H11 5' similar to Arabidopsis thaliana
sequence At5g47080 casein kinase II beta chain see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 484
Score = 139 bits (70), Expect = 3e-031
Identities = 211/258 (81%)
Strand = Plus / Plus
Query: 375 gatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatgg 434
|||| ||||| ||||||||| ||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 65 gatactgaagaatcagatgtcagtggttctgatggagaggacacatcctggatctcatgg 124
Query: 435 tattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagac 494
| |||| |||||||| || |||||| | |||||||| |||||||| |||||||||||
Sbjct: 125 ttctgcagtttaagaggcaacgagttcatttgtgaagttgatgatgagtacattcaagat 184
Query: 495 gacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctc 554
|||||| ||| |||| || || || ||||| ||||| |||||| ||||||| || |
Sbjct: 185 agcttcaatcttagtggacttagtagtcaagtcccttactatgatcatgctcttgacttg 244
Query: 555 attttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcgga 614
||||||||| | ||||| | ||| |||||| | |||||||||||||||||||| | |
Sbjct: 245 attttagatgtggaatcccccaatgatgatattctaactgaggaacaaaatgagctggta 304
Query: 615 gaatcagctgcagagatg 632
||||| ||||||||||||
Sbjct: 305 gaatctgctgcagagatg 322
>gb|CO162832.1|CO162832 FLD1_37_F11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_F11_A029 5', mRNA sequence
Length = 876
Score = 139 bits (70), Expect = 3e-031
Identities = 211/258 (81%)
Strand = Plus / Plus
Query: 375 gatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatgg 434
|||| ||||| ||||||||| ||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 188 gatactgaagaatcagatgtcagtggttctgatggagaggacacatcctggatctcatgg 247
Query: 435 tattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagac 494
| |||| |||||||| || |||||| | |||||||| |||||||| |||||||||||
Sbjct: 248 ttctgcagtttaagaggcaacgagttcatttgtgaagttgatgatgagtacattcaagat 307
Query: 495 gacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctc 554
|||||| ||| |||| || || || ||||| ||||| |||||| ||||||| || |
Sbjct: 308 agcttcaatcttagtggacttagtagtcaagtcccttactatgatcatgctcttgacttg 367
Query: 555 attttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcgga 614
||||||||| | ||||| | ||| |||||| | |||||||||||||||||||| | |
Sbjct: 368 attttagatgtggaatcccccaatgatgatattctaactgaggaacaaaatgagctggta 427
Query: 615 gaatcagctgcagagatg 632
||||| ||||||||||||
Sbjct: 428 gaatctgctgcagagatg 445
>gb|DR093692.1|DR093692 STRR1_9_G05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_9_G05_A033 5', mRNA sequence
Length = 881
Score = 139 bits (70), Expect = 3e-031
Identities = 211/258 (81%)
Strand = Plus / Plus
Query: 375 gatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatgg 434
|||| ||||| ||||||||| ||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 344 gatactgaagaatcagatgtcagtggttctgatggagaggacacatcctggatctcatgg 403
Query: 435 tattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagac 494
| |||| |||||||| || |||||| | |||||||| |||||||| |||||||||||
Sbjct: 404 ttctgcagtttaagaggcaacgagttcatttgtgaagttgatgatgagtacattcaagat 463
Query: 495 gacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctc 554
|||||| ||| |||| || || || ||||| ||||| |||||| ||||||| || |
Sbjct: 464 agcttcaatcttagtggacttagtagtcaagtcccttactatgatcatgctcttgacttg 523
Query: 555 attttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcgga 614
||||||||| | ||||| | ||| |||||| | |||||||||||||||||||| | |
Sbjct: 524 attttagatgtggaatcccccaatgatgatattctaactgaggaacaaaatgagctggta 583
Query: 615 gaatcagctgcagagatg 632
||||| ||||||||||||
Sbjct: 584 gaatctgctgcagagatg 601
>gb|CF401229.1|CF401229 RTWW1_11_G01.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_G01_A015 3', mRNA sequence
Length = 320
Score = 137 bits (69), Expect = 1e-030
Identities = 183/221 (82%)
Strand = Plus / Minus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 228 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 169
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 168 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 109
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 108 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 49
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatat 586
|| || || ||||| ||| | || |||||| ||| ||||||
Sbjct: 48 cttgacctgattttggatgtggagtcatctaatgatgatat 8
>gb|CF402602.1|CF402602 RTWW1_21_D11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_D11_A015 5', mRNA sequence
Length = 726
Score = 137 bits (69), Expect = 1e-030
Identities = 183/221 (82%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 499 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 558
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 559 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 618
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 619 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 678
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatat 586
|| || || ||||| ||| | || |||||| ||| ||||||
Sbjct: 679 cttgacctgattttggatgtggagtcatctaatgatgatat 719
>gb|CF398489.1|CF398489 RTDS3_15_F05.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_15_F05_A022 3', mRNA sequence
Length = 668
Score = 133 bits (67), Expect = 2e-029
Identities = 151/179 (84%)
Strand = Plus / Minus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 190 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 131
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 130 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 71
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgc 544
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 70 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgc 12
>gb|DT631216.1|DT631216 EST1146147 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF629 3' end, mRNA sequence
Length = 822
Score = 133 bits (67), Expect = 2e-029
Identities = 151/179 (84%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 621 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 680
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 681 atctcttggttctgtaatttaagaggcaatgagttcttttgtgaagttgatgatgagtac 740
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgc 544
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 741 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgc 799
>gb|CF398158.1|CF398158 RTDS3_21_F07.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_F07_A022 5', mRNA sequence
Length = 406
Score = 127 bits (64), Expect = 1e-027
Identities = 193/236 (81%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| | || ||||||||||| ||||| || |||
Sbjct: 171 tctgatacagatagcgaagaatcagatgtcaccggttctgatggagatgacacatcctgg 230
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || | |||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 231 atctcttggttctgtactttaagaggcaatgagttcttttgtgaagttgatgatgagtac 290
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 291 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 350
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatatgttcactgaggaaca 601
|| || || ||||| ||| | || |||||| ||| |||||| || || ||||||||
Sbjct: 351 cttgacctgattttggatgtggagtcatctaatgatgatatcttaaccgaggaaca 406
>gb|CF400393.1|CF400393 RTWW1_5_E07.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_E07_A015 3', mRNA sequence
Length = 756
Score = 125 bits (63), Expect = 5e-027
Identities = 150/179 (83%)
Strand = Plus / Minus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 234 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 175
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || |||||| | ||||||||||| |||||||| |||||||| |||
Sbjct: 174 atctcttggttctgtaatttaagaagcaatgagttcttttgtgaagttgatgatgagtac 115
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgc 544
||||| || || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 114 attcaggatgatttcaacctttgtggacttagtagccaagttccatactatgattatgc 56
>gb|CO159714.1|CO159714 FLD1_15_H03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_H03_A029 3', mRNA sequence
Length = 741
Score = 121 bits (61), Expect = 8e-026
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 444 ttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaac 503
|||||||| ||||||||||| |||||||| |||||||| |||||||| || || ||||||
Sbjct: 5 ttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgatttcaac 64
Query: 504 ctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcattttagat 563
|||||||| || || ||||||||||| || ||||||||||| || || || ||||| |||
Sbjct: 65 ctttgtggacttagtagccaagttccatactatgattatgcacttgacctgattttggat 124
Query: 564 attgaatcatctcatggtgatatgttcactgaggaacaaaatgag 608
| || |||||| ||| |||||| || || |||||||| ||||||
Sbjct: 125 gtggagtcatctaatgatgatatcttaaccgaggaacagaatgag 169
>gb|DR017539.1|DR017539 STRS1_17_A01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A01_A034 3', mRNA sequence
Length = 783
Score = 121 bits (61), Expect = 8e-026
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 444 ttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaac 503
|||||||| ||||||||||| |||||||| |||||||| |||||||| || || ||||||
Sbjct: 5 ttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgatttcaac 64
Query: 504 ctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcattttagat 563
|||||||| || || ||||||||||| || ||||||||||| || || || ||||| |||
Sbjct: 65 ctttgtggacttagtagccaagttccatactatgattatgcacttgacctgattttggat 124
Query: 564 attgaatcatctcatggtgatatgttcactgaggaacaaaatgag 608
| || |||||| ||| |||||| || || |||||||| ||||||
Sbjct: 125 gtggagtcatctaatgatgatatcttaaccgaggaacagaatgag 169
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 356 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 415
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 416 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 471
>gb|DR093781.1|DR093781 STRR1_10_H08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_H08_A033 3', mRNA sequence
Length = 753
Score = 121 bits (61), Expect = 8e-026
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 444 ttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaac 503
|||||||| ||||||||||| |||||||| |||||||| |||||||| || || ||||||
Sbjct: 4 ttaagaggcaatgagttcttttgtgaagttgatgatgagtacattcaggatgatttcaac 63
Query: 504 ctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcattttagat 563
|||||||| || || ||||||||||| || ||||||||||| || || || ||||| |||
Sbjct: 64 ctttgtggacttagtagccaagttccatactatgattatgcacttgacctgattttggat 123
Query: 564 attgaatcatctcatggtgatatgttcactgaggaacaaaatgag 608
| || |||||| ||| |||||| || || |||||||| ||||||
Sbjct: 124 gtggagtcatctaatgatgatatcttaaccgaggaacagaatgag 168
Score = 40.1 bits (20), Expect = 0.24
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 795 gtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggc 854
|||||||| ||||| || ||||||||||| | ||||| ||| | || ||||| ||||||
Sbjct: 355 gtgaagatttactgtccaaagtgtgaagatgtttactatccaagatcgaagtatcaaggc 414
Query: 855 aacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacata 910
|| | ||| || ||||| || || || || || |||||||| || ||||||||||
Sbjct: 415 aataccgatggagcatatttcggaaccacatttcctcatctatttttgatgacata 470
>gb|BQ696960.1|BQ696960 NXPV_047_D03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_047_D03 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 333
Score = 113 bits (57), Expect = 2e-023
Identities = 179/221 (80%)
Strand = Plus / Plus
Query: 366 tctgattctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtgg 425
|||||| | ||||| |||| ||||||||| || || ||||||||||| ||||| || |||
Sbjct: 74 tctgatacagatagcgaagaatcagatgtcagcggttctgatggagatgacacatcctgg 133
Query: 426 atttcatggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactac 485
|| || |||| || || ||||||| ||||||||||| |||||||| |||||||| |||
Sbjct: 134 atctcttggttctgtaatttaagagncaatgagttcttttgtgaagttgatgatgagtac 193
Query: 486 attcaagacgacttcaacctttgtggcctcagcagccaagttccttattatgattatgct 545
|||| || |||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 194 attcngnntgatttcaacctttgtggacttagtagccaagttccatactatgattatgca 253
Query: 546 ctcgatctcattttagatattgaatcatctcatggtgatat 586
|| || || ||||| ||| | || |||||| ||| ||||||
Sbjct: 254 cttgacctgattttggatgtggagtcatctaatgatgatat 294
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142,608
Number of Sequences: 355925
Number of extensions: 142608
Number of successful extensions: 44628
Number of sequences better than 0.5: 82
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 44467
Number of HSP's gapped (non-prelim): 160
length of query: 1385
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1366
effective length of database: 210,514,662
effective search space: 287563028292
effective search space used: 287563028292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)