BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478343.2.1
(694 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV031446.1|CV031446 RTNACL1_1_D07.g1_A029 Roots plus add... 40 0.12
gb|DR054231.1|DR054231 RTCA1_16_B10.b1_A029 Roots minus cal... 40 0.12
gb|DR094210.1|DR094210 STRR1_13_D08.b1_A033 Stem Response R... 40 0.12
gb|DR094529.1|DR094529 STRR1_15_D08.b1_A033 Stem Response R... 40 0.12
gb|DR094610.1|DR094610 STRR1_15_D08.g1_A033 Stem Response R... 40 0.12
gb|AW290506.1|AW290506 NXNV027G09F Nsf Xylem Normal wood Ve... 38 0.46
gb|AW981654.1|AW981654 PC15B05 Pine TriplEx pollen cone lib... 38 0.46
gb|AL749894.1|AL749894 AL749894 AS Pinus pinaster cDNA clon... 38 0.46
gb|BE123516.1|BE123516 NXNV_149_B07_F Nsf Xylem Normal wood... 38 0.46
gb|BF010666.1|BF010666 NXCI_087_H06_F NXCI (Nsf Xylem Compr... 38 0.46
gb|BF517885.1|BF517885 NXSI_029_C09_F NXSI (Nsf Xylem Side ... 38 0.46
gb|BF517736.1|BF517736 NXSI_029_F07_F NXSI (Nsf Xylem Side ... 38 0.46
gb|BG039895.1|BG039895 NXSI_105_C11_F NXSI (Nsf Xylem Side ... 38 0.46
gb|BQ197071.1|BQ197071 NXLV109_A08_F NXLV (Nsf Xylem Late w... 38 0.46
gb|BQ702049.1|BQ702049 NXSI_123_G07_F NXSI (Nsf Xylem Side ... 38 0.46
gb|CD027167.1|CD027167 NXNV027G09 Nsf Xylem Normal wood Ver... 38 0.46
gb|CF389250.1|CF389250 RTDR2_9_C07.g1_A021 Loblolly pine ro... 38 0.46
gb|CF392920.1|CF392920 RTDR3_19_A08.g1_A022 Loblolly pine r... 38 0.46
gb|CF479187.1|CF479187 RTWW3_24_B06.g1_A022 Well-watered lo... 38 0.46
gb|CF669903.1|CF669903 RTCNT1_46_F12.g1_A029 Root control P... 38 0.46
gb|BX683007.1|BX683007 BX683007 Pinus pinaster differenciat... 38 0.46
gb|CO170895.1|CO170895 NDL1_17_E03.g1_A029 Needles control ... 38 0.46
gb|CO173645.1|CO173645 NDL1_37_G04.g1_A029 Needles control ... 38 0.46
gb|CO176695.1|CO176695 NDL1_63_D04.g1_A029 Needles control ... 38 0.46
gb|CO197113.1|CO197113 GEO1_4_A10.b1_A029 Root gravitropism... 38 0.46
gb|CV033662.1|CV033662 RTNACL1_35_H05.g1_A029 Roots plus ad... 38 0.46
gb|CX648146.1|CX648146 COLD1_26_G04.g1_A029 Root cold Pinus... 38 0.46
gb|CX648451.1|CX648451 COLD1_28_F01.g1_A029 Root cold Pinus... 38 0.46
gb|DN445491.1|DN445491 EST941290 Sequencing ESTs from loblo... 38 0.46
gb|DN612041.1|DN612041 EST965091 Subtracted pine embryo lib... 38 0.46
gb|DN629567.1|DN629567 EST980383 Subtracted pine embryo lib... 38 0.46
gb|DR023955.1|DR023955 STRS1_61_E05.b1_A034 Shoot tip pitch... 38 0.46
gb|DR024014.1|DR024014 STRS1_61_E05.g1_A034 Shoot tip pitch... 38 0.46
gb|DR058635.1|DR058635 RTNIT1_13_B02.b1_A029 Roots minus ni... 38 0.46
gb|DR080211.1|DR080211 RTFEPL1_21_D09.b1_A029 Roots plus ad... 38 0.46
gb|DR080284.1|DR080284 RTFEPL1_21_D09.g1_A029 Roots plus ad... 38 0.46
gb|DR081310.1|DR081310 RTFEPL1_28_F06.g1_A029 Roots plus ad... 38 0.46
gb|DR091116.1|DR091116 RTAL1_19_B03.g1_A029 Roots plus adde... 38 0.46
gb|DR092882.1|DR092882 STRR1_4_D08.g1_A033 Stem Response Re... 38 0.46
gb|DR101545.1|DR101545 STRR1_74_C05.b1_A033 Stem Response R... 38 0.46
gb|DR168926.1|DR168926 RTPHOS1_28_F09.g1_A029 Roots minus p... 38 0.46
gb|DR385730.1|DR385730 RTHG1_10_B05.g1_A029 Roots plus adde... 38 0.46
gb|DR687086.1|DR687086 EST1077164 Normalized pine embryo li... 38 0.46
gb|DR691848.1|DR691848 EST1081935 Normalized pine embryo li... 38 0.46
gb|DR692522.1|DR692522 EST1082610 Normalized pine embryo li... 38 0.46
gb|DT626410.1|DT626410 EST1158334 Sequencing ESTs from lobl... 38 0.46
>gb|CV031446.1|CV031446 RTNACL1_1_D07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_D07_A029 5', mRNA sequence
Length = 734
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgggtga 659
||||| |||||||||||| |||||||| ||||
Sbjct: 488 ctccaaggtggagttccatccgcagtgagtga 457
>gb|DR054231.1|DR054231 RTCA1_16_B10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_B10_A029 3', mRNA sequence
Length = 855
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgggtga 659
||||| |||||||||||| |||||||| ||||
Sbjct: 299 ctccaaggtggagttccatccgcagtgagtga 268
>gb|DR094210.1|DR094210 STRR1_13_D08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_D08_A033 3', mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 628 ctccacggtggagttccagccgcagtgggtga 659
||||| |||||||||||| |||||||| ||||
Sbjct: 351 ctccaaggtggagttccatccgcagtgagtga 320
>gb|DR094529.1|DR094529 STRR1_15_D08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_15_D08_A033 3', mRNA sequence
Length = 828
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 625 ggcctccacggtggagttccagcc 648
|||||||| |||||||||||||||
Sbjct: 340 ggcctccagggtggagttccagcc 317
>gb|DR094610.1|DR094610 STRR1_15_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_15_D08_A033 5', mRNA sequence
Length = 825
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 625 ggcctccacggtggagttccagcc 648
|||||||| |||||||||||||||
Sbjct: 432 ggcctccagggtggagttccagcc 409
>gb|AW290506.1|AW290506 NXNV027G09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV027G09 5', mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 214 gatctcccctctctccagc 196
>gb|AW981654.1|AW981654 PC15B05 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC15B05, mRNA sequence
Length = 488
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 244 gatctcccctctctccagc 226
>gb|AL749894.1|AL749894 AL749894 AS Pinus pinaster cDNA clone AS02D03 similar to CYTOCHROME
C OXIDASE, mRNA sequence
Length = 436
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 191 gatctcccctctctccagc 173
>gb|BE123516.1|BE123516 NXNV_149_B07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_149_B07 5' similar to Arabidopsis thaliana
sequence At2g47380 putative cytochrome c oxidase Vc
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 248
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 92 gatctcccctctctccagc 74
>gb|BF010666.1|BF010666 NXCI_087_H06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_087_H06 5', mRNA sequence
Length = 382
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 217 cgttcatcctcttcctgat 235
>gb|BF517885.1|BF517885 NXSI_029_C09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_029_C09 5' similar to Arabidopsis thaliana
sequence At2g47380 putative cytochrome c oxidase Vc
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 415
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 181 gatctcccctctctccagc 163
>gb|BF517736.1|BF517736 NXSI_029_F07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_029_F07 5' similar to Arabidopsis thaliana
sequence At2g47380 putative cytochrome c oxidase Vc
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 390
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 155 gatctcccctctctccagc 137
>gb|BG039895.1|BG039895 NXSI_105_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_105_C11 5' similar to Arabidopsis thaliana
sequence At2g47380 putative cytochrome c oxidase Vc
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 435
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 200 gatctcccctctctccagc 182
>gb|BQ197071.1|BQ197071 NXLV109_A08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV109_A08 5' similar to Arabidopsis thaliana
sequence At2g47380 putative cytochrome c oxidase Vc
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 549
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 223 gatctcccctctctccagc 205
>gb|BQ702049.1|BQ702049 NXSI_123_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_123_G07 5' similar to Arabidopsis thaliana
sequence At2g47380 putative cytochrome c oxidase Vc
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 364
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 200 gatctcccctctctccagc 182
>gb|CD027167.1|CD027167 NXNV027G09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV027G09 5' similar to Arabidopsis thaliana sequence
At2g47380 putative cytochrome c oxidase Vc subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 418
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 214 gatctcccctctctccagc 196
>gb|CF389250.1|CF389250 RTDR2_9_C07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_9_C07_A021 5', mRNA
sequence
Length = 760
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 217 cgttcatcctcttcctgat 235
>gb|CF392920.1|CF392920 RTDR3_19_A08.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_19_A08_A022 5', mRNA
sequence
Length = 787
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 196 cgttcatcctcttcctgat 214
>gb|CF479187.1|CF479187 RTWW3_24_B06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_24_B06_A022 5', mRNA sequence
Length = 800
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 209 cgttcatcctcttcctgat 227
>gb|CF669903.1|CF669903 RTCNT1_46_F12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_46_F12_A029 5', mRNA sequence
Length = 729
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 245 cgttcatcctcttcctgat 263
>gb|BX683007.1|BX683007 BX683007 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126H06 similar to Cytochrome c oxidase
polypeptide Vc (EC 1.9.3.1), mRNA sequence
Length = 471
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 208 gatctcccctctctccagc 190
>gb|CO170895.1|CO170895 NDL1_17_E03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_17_E03_A029 5', mRNA sequence
Length = 769
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 149 cgttcatcctcttcctgat 167
>gb|CO173645.1|CO173645 NDL1_37_G04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_37_G04_A029 5', mRNA sequence
Length = 767
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 79 cgttcatcctcttcctgat 97
>gb|CO176695.1|CO176695 NDL1_63_D04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_63_D04_A029 5', mRNA sequence
Length = 809
Score = 38.2 bits (19), Expect = 0.46
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 635 gtggagttccagccgcagtgggt 657
||||||||||| |||||||||||
Sbjct: 464 gtggagttccaaccgcagtgggt 442
>gb|CO197113.1|CO197113 GEO1_4_A10.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_4_A10_A029 3', mRNA sequence
Length = 777
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 525 cgttcatcctcttcctgat 507
>gb|CV033662.1|CV033662 RTNACL1_35_H05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_H05_A029 5', mRNA sequence
Length = 445
Score = 38.2 bits (19), Expect = 0.46
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 635 gtggagttccagccgcagtgggt 657
||||||||||| |||||||||||
Sbjct: 243 gtggagttccaaccgcagtgggt 221
>gb|CX648146.1|CX648146 COLD1_26_G04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_G04_A029 5', mRNA sequence
Length = 835
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 298 cgttcatcctcttcctgat 316
>gb|CX648451.1|CX648451 COLD1_28_F01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_F01_A029 5', mRNA sequence
Length = 826
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 66 cgttcatcctcttcctgat 84
>gb|DN445491.1|DN445491 EST941290 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICV155 5' end, mRNA sequence
Length = 912
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 222 cgttcatcctcttcctgat 240
>gb|DN612041.1|DN612041 EST965091 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABA01, mRNA sequence
Length = 214
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 64 cgttcatcctcttcctgat 82
>gb|DN629567.1|DN629567 EST980383 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTABG76, mRNA sequence
Length = 295
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 145 cgttcatcctcttcctgat 163
>gb|DR023955.1|DR023955 STRS1_61_E05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_61_E05_A034 3', mRNA sequence
Length = 679
Score = 38.2 bits (19), Expect = 0.46
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 635 gtggagttccagccgcagtgggt 657
||||||||||| |||||||||||
Sbjct: 85 gtggagttccaaccgcagtgggt 63
>gb|DR024014.1|DR024014 STRS1_61_E05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_61_E05_A034 5', mRNA sequence
Length = 666
Score = 38.2 bits (19), Expect = 0.46
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 635 gtggagttccagccgcagtgggt 657
||||||||||| |||||||||||
Sbjct: 445 gtggagttccaaccgcagtgggt 423
>gb|DR058635.1|DR058635 RTNIT1_13_B02.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_B02_A029 3', mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 421 cgttcatcctcttcctgat 403
>gb|DR080211.1|DR080211 RTFEPL1_21_D09.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_21_D09_A029 3', mRNA sequence
Length = 695
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 510 cgttcatcctcttcctgat 492
>gb|DR080284.1|DR080284 RTFEPL1_21_D09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_21_D09_A029 5', mRNA sequence
Length = 709
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 612 cgttcatcctcttcctgat 594
>gb|DR081310.1|DR081310 RTFEPL1_28_F06.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_28_F06_A029 5', mRNA sequence
Length = 474
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 24 cgttcatcctcttcctgat 42
>gb|DR091116.1|DR091116 RTAL1_19_B03.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_B03_A029 5', mRNA sequence
Length = 612
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 254 cgttcatcctcttcctgat 272
>gb|DR092882.1|DR092882 STRR1_4_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_4_D08_A033 5', mRNA sequence
Length = 871
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 193 gatctcccctctctccagc 175
>gb|DR101545.1|DR101545 STRR1_74_C05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C05_A033 3', mRNA sequence
Length = 789
Score = 38.2 bits (19), Expect = 0.46
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 635 gtggagttccagccgcagtgggt 657
||||||||||| |||||||||||
Sbjct: 195 gtggagttccaaccgcagtgggt 173
>gb|DR168926.1|DR168926 RTPHOS1_28_F09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_28_F09_A029 5', mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 45 cgttcatcctcttcctgat 63
>gb|DR385730.1|DR385730 RTHG1_10_B05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_10_B05_A029 5', mRNA sequence
Length = 477
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 207 gatctcccctctctccagc 189
>gb|DR687086.1|DR687086 EST1077164 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABN17 3' end, mRNA sequence
Length = 790
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 424 cgttcatcctcttcctgat 442
>gb|DR691848.1|DR691848 EST1081935 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADE51 3' end, mRNA sequence
Length = 213
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 496 gatctcccctctctccagc 514
|||||||||||||||||||
Sbjct: 89 gatctcccctctctccagc 71
>gb|DR692522.1|DR692522 EST1082610 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADN16 3' end, mRNA sequence
Length = 851
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 257 cgttcatcctcttcctgat 275
>gb|DT626410.1|DT626410 EST1158334 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAA51 5' end, mRNA sequence
Length = 481
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 429 cgttcatcctcttcctgat 447
|||||||||||||||||||
Sbjct: 222 cgttcatcctcttcctgat 240
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,461
Number of Sequences: 355925
Number of extensions: 67461
Number of successful extensions: 21805
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21759
Number of HSP's gapped (non-prelim): 46
length of query: 694
length of database: 217,277,237
effective HSP length: 19
effective length of query: 675
effective length of database: 210,514,662
effective search space: 142097396850
effective search space used: 142097396850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)