BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF663414.1|CF663414 RTCNT1_2_E05.g1_A029 Root control Pi... 94 9e-018
gb|CO175343.1|CO175343 NDL1_54_D01.b1_A029 Needles control ... 94 9e-018
gb|CO175416.1|CO175416 NDL1_54_D01.g1_A029 Needles control ... 94 9e-018
gb|CO366765.1|CO366765 RTK1_29_H12.g1_A029 Roots minus pota... 94 9e-018
gb|CV031633.1|CV031633 RTNACL1_2_F07.g1_A029 Roots plus add... 94 9e-018
gb|CX647228.1|CX647228 COLD1_14_B03.g1_A029 Root cold Pinus... 94 9e-018
gb|DR092962.1|DR092962 STRR1_5_E03.b1_A033 Stem Response Re... 94 9e-018
gb|DR093044.1|DR093044 STRR1_5_E03.g1_A033 Stem Response Re... 94 9e-018
gb|DR118494.1|DR118494 RTMG1_17_H05.b1_A029 Roots minus mag... 94 9e-018
dbj|BD273071.1| Materials and methods for the modification ... 94 9e-018
gb|DR118577.1|DR118577 RTMG1_17_H05.g1_A029 Roots minus mag... 86 2e-015
gb|DT638113.1|DT638113 EST1153044 Normalized pine embryo li... 86 2e-015
dbj|BD272970.1| Materials and methods for the modification ... 82 3e-014
gb|CV031549.1|CV031549 RTNACL1_2_F07.b1_A029 Roots plus add... 80 1e-013
gb|DR687871.1|DR687871 EST1077954 Normalized pine embryo li... 78 5e-013
gb|DR693137.1|DR693137 EST1083225 Normalized pine embryo li... 78 5e-013
gb|DT634318.1|DT634318 EST1149249 Normalized pine embryo li... 78 5e-013
gb|DR693249.1|DR693249 EST1083337 Normalized pine embryo li... 76 2e-012
gb|BX250325.1|BX250325 BX250325 Pinus pinaster differenciat... 60 1e-007
gb|AW981549.1|AW981549 PC13H09 Pine TriplEx pollen cone lib... 46 0.002
>gb|CF663414.1|CF663414 RTCNT1_2_E05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_2_E05_A029 5', mRNA sequence
Length = 790
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 664 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 723
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 724 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 783
Query: 329 tac 331
|||
Sbjct: 784 tac 786
Score = 77.8 bits (39), Expect = 5e-013
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| | |||
Sbjct: 457 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtcagag 516
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 517 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 576
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 577 acattctggttctgg 591
>gb|CO175343.1|CO175343 NDL1_54_D01.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_54_D01_A029 3', mRNA sequence
Length = 687
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 178 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 237
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 238 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 297
Query: 329 tac 331
|||
Sbjct: 298 tac 300
Score = 46.1 bits (23), Expect = 0.002
Identities = 80/99 (80%)
Strand = Plus / Plus
Query: 38 gctccatatgcacactgggctgaggtgctgatactcggcatcccctccttcgtcgggcca 97
|||||||||||||| ||| | |||||| ||||| | || ||||| | || ||||| ||
Sbjct: 7 gctccatatgcacattggtcagaggtgttgatattggggatccctacgtttgtcggaccg 66
Query: 98 gccattgttccaggccacatgatcacattctggctctgg 136
|| |||| |||||| || ||||| ||||||||| |||||
Sbjct: 67 gcaattgctccaggacatatgattacattctggttctgg 105
>gb|CO175416.1|CO175416 NDL1_54_D01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_54_D01_A029 5', mRNA sequence
Length = 709
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 562 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 621
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 622 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 681
Query: 329 tac 331
|||
Sbjct: 682 tac 684
Score = 77.8 bits (39), Expect = 5e-013
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| | |||
Sbjct: 355 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtcagag 414
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 415 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 474
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 475 acattctggttctgg 489
>gb|CO366765.1|CO366765 RTK1_29_H12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_H12_A029 5', mRNA sequence
Length = 789
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Minus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 614 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 555
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 554 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 495
Query: 329 tac 331
|||
Sbjct: 494 tac 492
Score = 46.1 bits (23), Expect = 0.002
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 38 gctccatatgcacactgggctgaggtgctgatactcggcatcccctccttcgtcgggcca 97
|||||||||||||| ||| ||||||| ||||| | || ||||| | || ||||| ||
Sbjct: 785 gctccatatgcacattggtttgaggtgttgatattggggatccctacgtttgtcggaccg 726
Query: 98 gccattgttccaggccacatgatcacattctggctctgg 136
|| |||| |||||| || ||||| ||||||||| |||||
Sbjct: 725 gcaattgctccaggacatatgattacattctggttctgg 687
>gb|CV031633.1|CV031633 RTNACL1_2_F07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_F07_A029 5', mRNA sequence
Length = 788
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 545 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 604
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 605 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 664
Query: 329 tac 331
|||
Sbjct: 665 tac 667
Score = 77.8 bits (39), Expect = 5e-013
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| | |||
Sbjct: 338 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtcagag 397
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 398 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 457
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 458 acattctggttctgg 472
>gb|CX647228.1|CX647228 COLD1_14_B03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_14_B03_A029 5', mRNA sequence
Length = 638
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Minus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 478 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 419
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 418 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 359
Query: 329 tac 331
|||
Sbjct: 358 tac 356
>gb|DR092962.1|DR092962 STRR1_5_E03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_E03_A033 3', mRNA sequence
Length = 823
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 238 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 297
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 298 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 357
Query: 329 tac 331
|||
Sbjct: 358 tac 360
Score = 85.7 bits (43), Expect = 2e-015
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| |||||
Sbjct: 31 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtctgag 90
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 91 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 150
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 151 acattctggttctgg 165
>gb|DR093044.1|DR093044 STRR1_5_E03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_E03_A033 5', mRNA sequence
Length = 894
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 719 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 778
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 779 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 838
Query: 329 tac 331
|||
Sbjct: 839 tac 841
Score = 85.7 bits (43), Expect = 2e-015
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| |||||
Sbjct: 512 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtctgag 571
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 572 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 631
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 632 acattctggttctgg 646
>gb|DR118494.1|DR118494 RTMG1_17_H05.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_H05_A029 3', mRNA sequence
Length = 814
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 261 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 320
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 321 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 380
Query: 329 tac 331
|||
Sbjct: 381 tac 383
Score = 85.7 bits (43), Expect = 2e-015
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| |||||
Sbjct: 54 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtctgag 113
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 114 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 173
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 174 acattctggttctgg 188
>dbj|BD273071.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 631
Score = 93.7 bits (47), Expect = 9e-018
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 403 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 462
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 463 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 522
Query: 329 tac 331
|||
Sbjct: 523 tac 525
Score = 81.8 bits (41), Expect = 3e-014
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| | |||
Sbjct: 196 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtcagag 255
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| ||||||||
Sbjct: 256 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacacatgatt 315
Query: 122 acattctgg 130
|||||||||
Sbjct: 316 acattctgg 324
>gb|DR118577.1|DR118577 RTMG1_17_H05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_H05_A029 5', mRNA sequence
Length = 626
Score = 85.7 bits (43), Expect = 2e-015
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| |||||
Sbjct: 485 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtctgag 544
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 545 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 604
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 605 acattctggttctgg 619
>gb|DT638113.1|DT638113 EST1153044 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHB28 3' end, mRNA sequence
Length = 836
Score = 85.7 bits (43), Expect = 2e-015
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| |||||
Sbjct: 620 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtctgag 679
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 680 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 739
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 740 acattctggttctgg 754
>dbj|BD272970.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 474
Score = 81.8 bits (41), Expect = 3e-014
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| | |||
Sbjct: 196 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtcagag 255
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| ||||||||
Sbjct: 256 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacacatgatt 315
Query: 122 acattctgg 130
|||||||||
Sbjct: 316 acattctgg 324
Score = 63.9 bits (32), Expect = 8e-009
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 209 attccattctatggaggagcagaataccatgactatcatcattatgtaggaggccagagc 268
||||| ||||||||||| || || || |||||||| ||||||||||||||||| || ||
Sbjct: 403 attcctttctatggaggcgcggagtatcatgactaccatcattatgtaggaggacaaagt 462
Query: 269 caaagcaa 276
||||||||
Sbjct: 463 caaagcaa 470
>gb|CV031549.1|CV031549 RTNACL1_2_F07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_F07_A029 3', mRNA sequence
Length = 488
Score = 79.8 bits (40), Expect = 1e-013
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||||||||||||||| || || |||||||| ||||| || || |||||
Sbjct: 6 catgactaccatcattatgtaggaggacaaagtcaaagcaactttgcctcagtgttcaca 65
Query: 296 tactgtgattacttatatggcactgacaaaggttac 331
||||||||||| ||||| || ||||| || ||||||
Sbjct: 66 tactgtgattatttatacgggactgataagggttac 101
>gb|DR687871.1|DR687871 EST1077954 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABX56 3' end, mRNA sequence
Length = 774
Score = 77.8 bits (39), Expect = 5e-013
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| | |||
Sbjct: 545 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtcagag 604
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 605 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 664
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 665 acattctggttctgg 679
>gb|DR693137.1|DR693137 EST1083225 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADV18 3' end, mRNA sequence
Length = 785
Score = 77.8 bits (39), Expect = 5e-013
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || ||||||||||| || ||| |||||
Sbjct: 545 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcgcattggtctgag 604
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 605 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 664
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 665 acattctggttctgg 679
>gb|DT634318.1|DT634318 EST1149249 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG467 3' end, mRNA sequence
Length = 804
Score = 77.8 bits (39), Expect = 5e-013
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| | |||
Sbjct: 553 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtcagag 612
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 613 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 672
Query: 122 acattctggctctgg 136
||||||||| |||||
Sbjct: 673 acattctggttctgg 687
>gb|DR693249.1|DR693249 EST1083337 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADW75 3' end, mRNA sequence
Length = 750
Score = 75.8 bits (38), Expect = 2e-012
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgag 61
|||||||||||||||||||| ||||| || || || |||||||||||||| ||| |||||
Sbjct: 625 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcacattggtctgag 684
Query: 62 gtgctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatc 121
||| ||||| | || ||||| | || ||||| || || |||| |||||| || |||||
Sbjct: 685 gtgttgatattggggatccctacgtttgtcggaccggcaattgctccaggacatatgatt 744
Query: 122 acattc 127
||||||
Sbjct: 745 acattc 750
>gb|BX250325.1|BX250325 BX250325 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035D10, mRNA sequence
Length = 594
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgccaataggattcgcagctccatatgcaca 51
|||||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct: 536 gttcaccatgagttcactgctccaatgggttttgctgctccatatgcaca 585
>gb|AW981549.1|AW981549 PC13H09 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC13H09, mRNA sequence
Length = 594
Score = 46.1 bits (23), Expect = 0.002
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| ||||| || || ||||| ||||||||||| ||||| || ||||| || |||
Sbjct: 10 caaagcaactttgcctcagtgttcacatactgtgattatttatacgggactgataagggt 69
Query: 329 tac 331
|||
Sbjct: 70 tac 72
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,357
Number of Sequences: 355925
Number of extensions: 75357
Number of successful extensions: 25450
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25418
Number of HSP's gapped (non-prelim): 32
length of query: 682
length of database: 217,277,237
effective HSP length: 19
effective length of query: 663
effective length of database: 210,514,662
effective search space: 139571220906
effective search space used: 139571220906
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)