BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441276.2.1
(1796 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ291190.1|BQ291190 NXRV057_A06_F NXRV (Nsf Xylem Root w... 62 8e-008
gb|DR685262.1|DR685262 EST1075339 Normalized pine embryo li... 62 8e-008
gb|DT632793.1|DT632793 EST1147724 Normalized pine embryo li... 62 8e-008
gb|BX251174.1|BX251174 BX251174 Pinus pinaster differenciat... 40 0.31
gb|BX682439.1|BX682439 BX682439 Pinus pinaster differenciat... 40 0.31
>gb|BQ291190.1|BQ291190 NXRV057_A06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV057_A06 5', mRNA sequence
Length = 633
Score = 61.9 bits (31), Expect = 8e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatctt 1001
|||||||||||||||||||||||||||||||
Sbjct: 387 ttcttgaccttgcaagaccttttggaatctt 357
Score = 61.9 bits (31), Expect = 8e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatctt 1001
|||||||||||||||||||||||||||||||
Sbjct: 171 ttcttgaccttgcaagaccttttggaatctt 141
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 387 ttcttgaccttgcaagaccttttggaat 360
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 171 ttcttgaccttgcaagaccttttggaat 144
>gb|DR685262.1|DR685262 EST1075339 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB186 3' end, mRNA sequence
Length = 841
Score = 61.9 bits (31), Expect = 8e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatctt 1001
|||||||||||||||||||||||||||||||
Sbjct: 808 ttcttgaccttgcaagaccttttggaatctt 778
Score = 61.9 bits (31), Expect = 8e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatctt 1001
|||||||||||||||||||||||||||||||
Sbjct: 592 ttcttgaccttgcaagaccttttggaatctt 562
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 808 ttcttgaccttgcaagaccttttggaat 781
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 592 ttcttgaccttgcaagaccttttggaat 565
>gb|DT632793.1|DT632793 EST1147724 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFN79 3' end, mRNA sequence
Length = 783
Score = 61.9 bits (31), Expect = 8e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatctt 1001
|||||||||||||||||||||||||||||||
Sbjct: 592 ttcttgaccttgcaagaccttttggaatctt 562
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 592 ttcttgaccttgcaagaccttttggaat 565
>gb|BX251174.1|BX251174 BX251174 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP046C06, mRNA sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacc 989
||||||||||||||||||||
Sbjct: 366 cttcttgaccttgcaagacc 385
>gb|BX682439.1|BX682439 BX682439 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 116F07, mRNA sequence
Length = 540
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacc 989
||||||||||||||||||||
Sbjct: 371 cttcttgaccttgcaagacc 390
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,713
Number of Sequences: 355925
Number of extensions: 196713
Number of successful extensions: 52803
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52789
Number of HSP's gapped (non-prelim): 14
length of query: 1796
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1776
effective length of database: 210,158,737
effective search space: 373241916912
effective search space used: 373241916912
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)