BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.2
(962 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW056708.1|AW056708 ST54G10 Pine TriplEx shoot tip libra... 52 4e-005
gb|BX249948.1|BX249948 BX249948 Pinus pinaster differenciat... 52 4e-005
gb|BX250113.1|BX250113 BX250113 Pinus pinaster differenciat... 52 4e-005
gb|AW698207.1|AW698207 NXNV_074_H04_F Nsf Xylem Normal wood... 52 4e-005
gb|AW870091.1|AW870091 NXNV_124_A03_F Nsf Xylem Normal wood... 52 4e-005
gb|BF186444.1|BF186444 NXCI_137_E08_F NXCI (Nsf Xylem Compr... 52 4e-005
gb|BF517905.1|BF517905 NXSI_031_E03_F NXSI (Nsf Xylem Side ... 52 4e-005
gb|CD022220.1|CD022220 NXPV_027_D11_F NXPV (Nsf Xylem Plani... 52 4e-005
gb|CF390682.1|CF390682 RTDR2_20_B08.g1_A021 Loblolly pine r... 52 4e-005
gb|CF391037.1|CF391037 RTDR3_3_F10.b1_A022 Loblolly pine ro... 52 4e-005
gb|CF391064.1|CF391064 RTDR3_3_F10.g1_A022 Loblolly pine ro... 52 4e-005
gb|CF402335.1|CF402335 RTWW1_19_A04.g1_A015 Well-watered lo... 52 4e-005
gb|CF665368.1|CF665368 RTCNT1_15_C07.g1_A029 Root control P... 52 4e-005
gb|CF669680.1|CF669680 RTCNT1_45_A03.g1_A029 Root control P... 52 4e-005
gb|CF671413.1|CF671413 RTCNT1_56_H12.g1_A029 Root control P... 52 4e-005
gb|BX680292.1|BX680292 BX680292 RS Pinus pinaster cDNA clon... 52 4e-005
gb|CO164625.1|CO164625 FLD1_49_F04.b1_A029 Root flooded Pin... 52 4e-005
gb|CO365136.1|CO365136 RTK1_23_G12.g1_A029 Roots minus pota... 52 4e-005
gb|CV032710.1|CV032710 RTNACL1_17_H04.g1_A029 Roots plus ad... 52 4e-005
gb|CX645821.1|CX645821 COLD1_5_B07.g1_A029 Root cold Pinus ... 52 4e-005
gb|CX714768.1|CX714768 RTPQ1_26_D02.g1_A032 Roots treated w... 52 4e-005
gb|DR013225.1|DR013225 HEAT1_18_A08.b1_A029 Root at 37 C fo... 52 4e-005
gb|DR013301.1|DR013301 HEAT1_18_A08.g1_A029 Root at 37 C fo... 52 4e-005
gb|DR014701.1|DR014701 HEAT1_51_C10.b1_A029 Root at 37 C fo... 52 4e-005
gb|DR048281.1|DR048281 RTBOR1_7_E09.g2_A029 Roots plus adde... 52 4e-005
gb|DR052331.1|DR052331 RTCA1_4_A04.b1_A029 Roots minus calc... 52 4e-005
gb|DR052406.1|DR052406 RTCA1_4_A04.g1_A029 Roots minus calc... 52 4e-005
gb|DR053482.1|DR053482 RTCA1_11_A06.g1_A029 Roots minus cal... 52 4e-005
gb|DR080650.1|DR080650 RTFEPL1_24_E09.b1_A029 Roots plus ad... 52 4e-005
gb|DR080719.1|DR080719 RTFEPL1_24_E09.g1_A029 Roots plus ad... 52 4e-005
gb|DR094647.1|DR094647 STRR1_15_H01.g1_A033 Stem Response R... 52 4e-005
gb|DR097195.1|DR097195 STRR1_33_D11.b1_A033 Stem Response R... 52 4e-005
gb|DR112815.1|DR112815 RTS1_30_G06.g1_A029 Roots minus sulf... 52 4e-005
gb|DR118662.1|DR118662 RTMG1_18_A05.g1_A029 Roots minus mag... 52 4e-005
gb|DR161306.1|DR161306 RTFE1_11_B11.b1_A029 Roots minus iro... 52 4e-005
gb|DR161390.1|DR161390 RTFE1_11_B11.g1_A029 Roots minus iro... 52 4e-005
gb|DR744558.1|DR744558 RTCU1_23_F12.b1_A029 Roots plus adde... 52 4e-005
gb|DR744628.1|DR744628 RTCU1_23_F12.g1_A029 Roots plus adde... 52 4e-005
gb|AA556201.1|AA556201 56 Loblolly pine N Pinus taeda cDNA ... 46 0.003
gb|AW042811.1|AW042811 ST25F09 Pine TriplEx shoot tip libra... 46 0.003
gb|AW289699.1|AW289699 NXNV004C12F Nsf Xylem Normal wood Ve... 46 0.003
gb|AW290319.1|AW290319 NXNV018H02F Nsf Xylem Normal wood Ve... 46 0.003
gb|AW495767.1|AW495767 NXNV_065_B06_FF Nsf Xylem Normal woo... 46 0.003
gb|BX249528.1|BX249528 BX249528 Pinus pinaster differenciat... 46 0.003
gb|BX251987.1|BX251987 BX251987 Pinus pinaster differenciat... 46 0.003
gb|AW698117.1|AW698117 NXNV_066_F09_F Nsf Xylem Normal wood... 46 0.003
gb|BE187094.1|BE187094 NXNV_155_E07_F Nsf Xylem Normal wood... 46 0.003
gb|BE187399.1|BE187399 NXNV_163_E05_F Nsf Xylem Normal wood... 46 0.003
gb|BE496546.1|BE496546 NXCI_020_E01_F NXCI (Nsf Xylem Compr... 46 0.003
gb|BE997092.1|BE997092 NXCI_098_H03_F NXCI (Nsf Xylem Compr... 46 0.003
gb|BE997194.1|BE997194 NXCI_107_E09_F NXCI (Nsf Xylem Compr... 46 0.003
gb|BF169692.1|BF169692 NXCI_126_E11_F NXCI (Nsf Xylem Compr... 46 0.003
gb|BF186159.1|BF186159 NXCI_133_F09_F NXCI (Nsf Xylem Compr... 46 0.003
gb|BF517818.1|BF517818 NXSI_027_E10_F NXSI (Nsf Xylem Side ... 46 0.003
gb|BF609503.1|BF609503 NXSI_043_D07_F NXSI (Nsf Xylem Side ... 46 0.003
gb|BF610028.1|BF610028 NXSI_053_H09_F NXSI (Nsf Xylem Side ... 46 0.003
gb|BF777196.1|BF777196 NXSI_066_D03_F NXSI (Nsf Xylem Side ... 46 0.003
gb|BG039184.1|BG039184 NXSI_095_H09_F NXSI (Nsf Xylem Side ... 46 0.003
gb|BG040940.1|BG040940 NXSI_116_H05_F NXSI (Nsf Xylem Side ... 46 0.003
gb|BG318207.1|BG318207 NXPV_011_G11_F NXPV (Nsf Xylem Plani... 46 0.003
gb|BG318371.1|BG318371 NXPV_012_G12_F NXPV (Nsf Xylem Plani... 46 0.003
gb|BG673782.1|BG673782 NXPV_075_A05_F NXPV (Nsf Xylem Plani... 46 0.003
gb|BG673842.1|BG673842 NXPV_075_G09_F NXPV (Nsf Xylem Plani... 46 0.003
gb|BQ290492.1|BQ290492 NXRV045_A02_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ290612.1|BQ290612 NXRV047_E02_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ291138.1|BQ291138 NXRV056_C07_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ291200.1|BQ291200 NXRV057_B07_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ291343.1|BQ291343 NXRV052_A02_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ634093.1|BQ634093 NXRV065_F12_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ634173.1|BQ634173 NXRV064_F07_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ634407.1|BQ634407 NXRV068_E11_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ635039.1|BQ635039 NXRV076_B12_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ635286.1|BQ635286 NXRV078_E01_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ654945.1|BQ654945 NXRV088_B04_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ655122.1|BQ655122 NXRV090_E04_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ696917.1|BQ696917 NXPV_046_H01_F NXPV (Nsf Xylem Plani... 46 0.003
gb|BQ697148.1|BQ697148 NXPV_050_B04_F NXPV (Nsf Xylem Plani... 46 0.003
gb|BQ698779.1|BQ698779 NXNV_063_F12_F Nsf Xylem Normal wood... 46 0.003
gb|BQ699015.1|BQ699015 NXRV118_D04_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ699513.1|BQ699513 NXRV123_C07_F NXRV (Nsf Xylem Root w... 46 0.003
gb|BQ699915.1|BQ699915 NXRV131_D02_F NXRV (Nsf Xylem Root w... 46 0.003
gb|CD024432.1|CD024432 NXRV_041_B09_F NXRV (Nsf Xylem Root ... 46 0.003
gb|CD027018.1|CD027018 NXNV018H02 Nsf Xylem Normal wood Ver... 46 0.003
gb|CD027724.1|CD027724 NXNV_065_B06_F Nsf Xylem Normal wood... 46 0.003
gb|CD028249.1|CD028249 NXNV004C12 Nsf Xylem Normal wood Ver... 46 0.003
gb|CF394113.1|CF394113 RTDS2_3_F06.g1_A021 Drought-stressed... 46 0.003
gb|CF474390.1|CF474390 RTWW2_20_E12.g1_A021 Well-watered lo... 46 0.003
gb|CF666108.1|CF666108 RTCNT1_20_G08.g1_A029 Root control P... 46 0.003
gb|CR392735.1|CR392735 CR392735 RN Pinus pinaster cDNA clon... 46 0.003
gb|CO160267.1|CO160267 FLD1_19_G10.g1_A029 Root flooded Pin... 46 0.003
gb|CO167577.1|CO167577 FLD1_69_F12.g1_A029 Root flooded Pin... 46 0.003
gb|CV033679.1|CV033679 RTNACL1_36_A12.b1_A029 Roots plus ad... 46 0.003
gb|CV034548.1|CV034548 RTNACL1_9_G12.g1_A029 Roots plus add... 46 0.003
gb|CV034763.1|CV034763 RTNACL1_11_A07.g1_A029 Roots plus ad... 46 0.003
gb|CX648457.1|CX648457 COLD1_28_F07.g1_A029 Root cold Pinus... 46 0.003
gb|CX651490.1|CX651490 COLD1_52_F06.g1_A029 Root cold Pinus... 46 0.003
gb|CX652128.1|CX652128 COLD1_57_C12.b1_A029 Root cold Pinus... 46 0.003
gb|CX713194.1|CX713194 RTPQ1_7_C08.g1_A032 Roots treated wi... 46 0.003
gb|DR072705.1|DR072705 RTDK1_28_C05.b1_A029 Roots, dark Pin... 46 0.003
gb|DR089798.1|DR089798 RTAL1_10_H02.g1_A029 Roots plus adde... 46 0.003
gb|DR161948.1|DR161948 RTFE1_14_G12.g1_A029 Roots minus iro... 46 0.003
gb|AA567011.1|AA567011 1065 Loblolly pine NA Pinus taeda cD... 44 0.010
gb|AI812436.1|AI812436 11A3 Pine Lambda Zap Xylem library P... 44 0.010
gb|AW758847.1|AW758847 NXNV_091_E04_F Nsf Xylem Normal wood... 44 0.010
gb|BF518306.1|BF518306 NXSI_037_G04_F NXSI (Nsf Xylem Side ... 44 0.010
gb|CD024298.1|CD024298 NXRV_039_E03_F NXRV (Nsf Xylem Root ... 44 0.010
gb|CD025371.1|CD025371 NXSI_048_C03_F NXSI (Nsf Xylem Side ... 44 0.010
gb|CO164705.1|CO164705 FLD1_49_F04.g1_A029 Root flooded Pin... 44 0.010
gb|CX712703.1|CX712703 RTPQ1_4_E07.b2_A032 Roots treated wi... 44 0.010
gb|CX712776.1|CX712776 RTPQ1_4_E07.g2_A032 Roots treated wi... 44 0.010
gb|DR161658.1|DR161658 RTFE1_13_D07.b1_A029 Roots minus iro... 44 0.010
gb|DR178487.1|DR178487 RTMNUT1_12_D04.b1_A029 Roots minus m... 44 0.010
gb|DR689054.1|DR689054 EST1079140 Normalized pine embryo li... 44 0.010
gb|DR743028.1|DR743028 RTCU1_13_C09.b1_A029 Roots plus adde... 44 0.010
gb|DR743104.1|DR743104 RTCU1_13_C09.g1_A029 Roots plus adde... 44 0.010
gb|DT635057.1|DT635057 EST1149988 Normalized pine embryo li... 44 0.010
gb|BQ699628.1|BQ699628 NXRV124_G04_F NXRV (Nsf Xylem Root w... 42 0.041
gb|CD024510.1|CD024510 NXRV_043_H09_F NXRV (Nsf Xylem Root ... 42 0.041
gb|DR061030.1|DR061030 RTNIT1_31_D05.g1_A029 Roots minus ni... 42 0.041
gb|AW290097.1|AW290097 NXNV010G09F Nsf Xylem Normal wood Ve... 40 0.16
gb|BX254669.1|BX254669 BX254669 Pinus pinaster differenciat... 40 0.16
gb|BQ290463.1|BQ290463 NXRV046_E10_F NXRV (Nsf Xylem Root w... 40 0.16
gb|CD017971.1|CD017971 NXCI_151_A02_F NXCI (Nsf Xylem Compr... 40 0.16
>gb|AW056708.1|AW056708 ST54G10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54G10, mRNA sequence
Length = 391
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 125 acatgtccatacatggaatagtacac 100
>gb|BX249948.1|BX249948 BX249948 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030F04 similar to MINOR ALLERGEN ALT A 7,
mRNA sequence
Length = 682
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 111 acatgtccatacatggaatagtacac 86
>gb|BX250113.1|BX250113 BX250113 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP032F01 similar to MINOR ALLERGEN, mRNA
sequence
Length = 675
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 453 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 408
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 132 atctcctcagcaagtttctctacatgtccatacatagaatagtacac 86
>gb|AW698207.1|AW698207 NXNV_074_H04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_074_H04 5' similar to Arabidopsis thaliana
sequence At4g27270 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 374
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 203 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 158
>gb|AW870091.1|AW870091 NXNV_124_A03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_124_A03 5' similar to Arabidopsis thaliana
sequence At5g54500 1,4-benzoquinone reductase-like; Trp
repressor binding protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 219
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 100 acatgtccatacatggaatagtacac 75
>gb|BF186444.1|BF186444 NXCI_137_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_137_E08 5' similar to Arabidopsis
thaliana sequence At4g27270 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 494
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 186 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 141
>gb|BF517905.1|BF517905 NXSI_031_E03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_031_E03 5' similar to Arabidopsis thaliana
sequence At5g54500 1,4-benzoquinone reductase-like; Trp
repressor binding protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 315
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 101 acatgtccatacatggaatagtacac 76
>gb|CD022220.1|CD022220 NXPV_027_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_027_D11 5' similar to Arabidopsis
thaliana sequence At5g54500 1,4-benzoquinone
reductase-like; Trp repressor binding protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 193
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 109 acatgtccatacatggaatagtacac 84
>gb|CF390682.1|CF390682 RTDR2_20_B08.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_20_B08_A021 5', mRNA
sequence
Length = 826
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 97 acatgtccatacatggaatagtacac 72
>gb|CF391037.1|CF391037 RTDR3_3_F10.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_3_F10_A022 3', mRNA
sequence
Length = 663
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 110 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 65
>gb|CF391064.1|CF391064 RTDR3_3_F10.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_3_F10_A022 5', mRNA
sequence
Length = 522
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 432 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 387
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 111 atctcctcagcaagtttctctacatgtccatacatagaatagtacac 65
>gb|CF402335.1|CF402335 RTWW1_19_A04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_19_A04_A015 5', mRNA sequence
Length = 732
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 412 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 367
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 91 atctcctcagcaagtttctctacatgtccatacatagaatagtacac 45
>gb|CF665368.1|CF665368 RTCNT1_15_C07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_C07_A029 5', mRNA sequence
Length = 668
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 87 acatgtccatacatggaatagtacac 62
>gb|CF669680.1|CF669680 RTCNT1_45_A03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_A03_A029 5', mRNA sequence
Length = 701
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 199 acatgtccatacatggaatagtacac 174
>gb|CF671413.1|CF671413 RTCNT1_56_H12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_56_H12_A029 5', mRNA sequence
Length = 801
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 54 acatgtccatacatggaatagtacac 29
>gb|BX680292.1|BX680292 BX680292 RS Pinus pinaster cDNA clone RS41F02, mRNA sequence
Length = 612
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 416 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 371
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 95 atctcctcagcaagtttctctacatgtccatacatagaatagtacac 49
>gb|CO164625.1|CO164625 FLD1_49_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_49_F04_A029 3', mRNA sequence
Length = 838
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 37 acatgtccatacatggaatagtacac 12
>gb|CO365136.1|CO365136 RTK1_23_G12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_G12_A029 5', mRNA sequence
Length = 810
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 508 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 553
>gb|CV032710.1|CV032710 RTNACL1_17_H04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_17_H04_A029 5', mRNA sequence
Length = 716
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 87 acatgtccatacatggaatagtacac 62
>gb|CX645821.1|CX645821 COLD1_5_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_B07_A029 5', mRNA sequence
Length = 747
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 179 acatgtccatacatggaatagtacac 154
>gb|CX714768.1|CX714768 RTPQ1_26_D02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_26_D02_A032 5', mRNA sequence
Length = 524
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 432 gctgtcaatgcagtcgtctcctgtccaccaccctgagatcctgtgc 387
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 111 atctcctcagcaagtttctctacatgtccatacatagaatagtacac 65
>gb|DR013225.1|DR013225 HEAT1_18_A08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_18_A08_A029 3', mRNA sequence
Length = 852
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 33 acatgtccatacatggaatagtacac 8
>gb|DR013301.1|DR013301 HEAT1_18_A08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_18_A08_A029 5', mRNA sequence
Length = 705
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 91 acatgtccatacatggaatagtacac 66
>gb|DR014701.1|DR014701 HEAT1_51_C10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C10_A029 3', mRNA sequence
Length = 861
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 739 acatgtccatacatggaatagtacac 764
>gb|DR048281.1|DR048281 RTBOR1_7_E09.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_7_E09_A029 5', mRNA sequence
Length = 756
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 108 acatgtccatacatggaatagtacac 83
>gb|DR052331.1|DR052331 RTCA1_4_A04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_A04_A029 3', mRNA sequence
Length = 850
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 101 acatgtccatacatggaatagtacac 76
>gb|DR052406.1|DR052406 RTCA1_4_A04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_A04_A029 5', mRNA sequence
Length = 835
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 91 acatgtccatacatggaatagtacac 66
>gb|DR053482.1|DR053482 RTCA1_11_A06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_11_A06_A029 5', mRNA sequence
Length = 537
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 86 acatgtccatacatggaatagtacac 61
>gb|DR080650.1|DR080650 RTFEPL1_24_E09.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_24_E09_A029 3', mRNA sequence
Length = 867
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 40 acatgtccatacatggaatagtacac 15
>gb|DR080719.1|DR080719 RTFEPL1_24_E09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_24_E09_A029 5', mRNA sequence
Length = 765
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 112 acatgtccatacatggaatagtacac 87
>gb|DR094647.1|DR094647 STRR1_15_H01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_15_H01_A033 5', mRNA sequence
Length = 294
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 56 acatgtccatacatggaatagtacac 31
>gb|DR097195.1|DR097195 STRR1_33_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_D11_A033 3', mRNA sequence
Length = 882
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 776 acatgtccatacatggaatagtacac 801
>gb|DR112815.1|DR112815 RTS1_30_G06.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_30_G06_A029 5', mRNA sequence
Length = 652
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 167 acatgtccatacatggaatagtacac 142
>gb|DR118662.1|DR118662 RTMG1_18_A05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_A05_A029 5', mRNA sequence
Length = 673
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 86 acatgtccatacatggaatagtacac 61
>gb|DR161306.1|DR161306 RTFE1_11_B11.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_11_B11_A029 3', mRNA sequence
Length = 830
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 33 acatgtccatacatggaatagtacac 8
>gb|DR161390.1|DR161390 RTFE1_11_B11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_11_B11_A029 5', mRNA sequence
Length = 754
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 190 acatgtccatacatggaatagtacac 165
>gb|DR744558.1|DR744558 RTCU1_23_F12.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_23_F12_A029 3', mRNA sequence
Length = 738
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 34 acatgtccatacatggaatagtacac 9
>gb|DR744628.1|DR744628 RTCU1_23_F12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_23_F12_A029 5', mRNA sequence
Length = 878
Score = 52.0 bits (26), Expect = 4e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||||||||||||||||||||
Sbjct: 190 acatgtccatacatggaatagtacac 165
>gb|AA556201.1|AA556201 56 Loblolly pine N Pinus taeda cDNA clone 2N8C, mRNA sequence
Length = 470
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | ||||||||||||||||||||| ||||
Sbjct: 112 atctcctcagcaagtttctctacatgtccatacatggaatagaacac 66
>gb|AW042811.1|AW042811 ST25F09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST25F09, mRNA sequence
Length = 419
Score = 46.1 bits (23), Expect = 0.003
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatagtacac 815
||||||||| ||||||||||||||||
Sbjct: 132 acatgtccanacatggaatagtacac 107
>gb|AW289699.1|AW289699 NXNV004C12F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV004C12 5', mRNA sequence
Length = 426
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 793 tgtccatacatggaatagtacac 815
|||||||||||||||||||||||
Sbjct: 115 tgtccatacatggaatagtacac 93
>gb|AW290319.1|AW290319 NXNV018H02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV018H02 5', mRNA sequence
Length = 522
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | ||||||||||||||||||||| ||||
Sbjct: 120 atctcctcagcaagtttctctacatgtccatacatggaatagaacac 74
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatag 810
|||||||||||||||||||||
Sbjct: 456 acatgtccatacatggaatag 436
>gb|AW495767.1|AW495767 NXNV_065_B06_FF Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_065_B06_F 5', mRNA sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 120 atctcctcagcaagtttctctacatgtccatacatagaatagtacac 74
>gb|BX249528.1|BX249528 BX249528 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP025B03 similar to MINOR ALLERGEN, mRNA
sequence
Length = 621
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 132 atctcctcagcaagtttctctacatgtccatacatagaatagtacac 86
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 453 gctgtcaatgcagtcgtctcctgtccaccgccctgagatcctgtgc 408
>gb|BX251987.1|BX251987 BX251987 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP058B07 similar to MINOR ALLERGEN, mRNA
sequence
Length = 604
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 132 atctcctcagcaagtttctctacatgtccatacatagaatagtacac 86
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 448 gctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||| || ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 453 gctgtcaatgcagtcgtctcctgtccaccgccctgagatcctgtgc 408
>gb|AW698117.1|AW698117 NXNV_066_F09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_066_F09 5' similar to Arabidopsis thaliana
sequence At5g54500 1,4-benzoquinone reductase-like; Trp
repressor binding protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 793 tgtccatacatggaatagtacac 815
|||||||||||||||||||||||
Sbjct: 115 tgtccatacatggaatagtacac 93
>gb|BE187094.1|BE187094 NXNV_155_E07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_155_E07 5' similar to Arabidopsis thaliana
sequence At5g54500 1,4-benzoquinone reductase-like; Trp
repressor binding protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 275
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | ||||||||||||||||||||| ||||
Sbjct: 127 atctcctcagcaagtttctctacatgtccatacatggaatagaacac 81
>gb|BE187399.1|BE187399 NXNV_163_E05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_163_E05 5' similar to Arabidopsis thaliana
sequence At5g54500 1,4-benzoquinone reductase-like; Trp
repressor binding protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 491
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | ||||||||||||||||||||| ||||
Sbjct: 120 atctcctcagcaagtttctctacatgtccatacatggaatagaacac 74
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 790 acatgtccatacatggaatag 810
|||||||||||||||||||||
Sbjct: 456 acatgtccatacatggaatag 436
>gb|BE496546.1|BE496546 NXCI_020_E01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_020_E01 5' similar to Arabidopsis
thaliana sequence At5g54500 1,4-benzoquinone
reductase-like; Trp repressor binding protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 545
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | ||||||||||||||||||||| ||||
Sbjct: 120 atctcctcagcaagtttctctacatgtccatacatggaatagaacac 74
>gb|BE997092.1|BE997092 NXCI_098_H03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_098_H03 5' similar to Arabidopsis
thaliana sequence At5g54500 1,4-benzoquinone
reductase-like; Trp repressor binding protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 435
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 769 atctcttcagctagtttgccaacatgtccatacatggaatagtacac 815
||||| ||||| ||||| | ||||||||||||||||||||| ||||
Sbjct: 112 atctcctcagcaagtttctctacatgtccatacatggaatagaacac 66
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,250
Number of Sequences: 355925
Number of extensions: 106250
Number of successful extensions: 28854
Number of sequences better than 0.5: 123
Number of HSP's better than 0.5 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28601
Number of HSP's gapped (non-prelim): 253
length of query: 962
length of database: 217,277,237
effective HSP length: 19
effective length of query: 943
effective length of database: 210,514,662
effective search space: 198515326266
effective search space used: 198515326266
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)