BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciat... 40 0.11
gb|CF388482.1|CF388482 RTDR2_3_F06.g1_A021 Loblolly pine ro... 40 0.11
gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pin... 40 0.11
gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nit... 40 0.11
gb|DR071265.1|DR071265 RTDK1_18_F12.g1_A029 Roots, dark Pin... 40 0.11
gb|DR099748.1|DR099748 STRR1_58_E10.b1_A033 Stem Response R... 40 0.11
gb|DR388190.1|DR388190 RTHG1_26_E04.g1_A029 Roots plus adde... 40 0.11
gb|DR745526.1|DR745526 RTCU1_30_F04.b1_A029 Roots plus adde... 40 0.11
gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus adde... 40 0.11
>gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088D07, mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatgga 206
||||||||||||||||| ||||| || || ||||||
Sbjct: 481 tggaaatggcagaaagcacaccccaatgggtatgga 516
>gb|CF388482.1|CF388482 RTDR2_3_F06.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_3_F06_A021 5', mRNA
sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 444 acattttaatataatttgat 463
||||||||||||||||||||
Sbjct: 185 acattttaatataatttgat 204
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 444 acattttaatataatttgat 463
||||||||||||||||||||
Sbjct: 89 acattttaatataatttgat 108
>gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E03_A029 3', mRNA sequence
Length = 811
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatgga 206
||||||||||||||||| ||||| || || ||||||
Sbjct: 472 tggaaatggcagaaagcacaccccaatgggtatgga 507
>gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_E08_A029 3', mRNA sequence
Length = 748
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatgga 206
||||||||||||||||| ||||| || || ||||||
Sbjct: 362 tggaaatggcagaaagcacaccccaatgggtatgga 397
>gb|DR071265.1|DR071265 RTDK1_18_F12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_F12_A029 5', mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatgga 206
||||||||||||||||| ||||| || || ||||||
Sbjct: 308 tggaaatggcagaaagcacaccccaatgggtatgga 273
>gb|DR099748.1|DR099748 STRR1_58_E10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_E10_A033 3', mRNA sequence
Length = 748
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatgga 206
||||||||||||||||| ||||| || || ||||||
Sbjct: 257 tggaaatggcagaaagcacaccccaatgggtatgga 292
>gb|DR388190.1|DR388190 RTHG1_26_E04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_26_E04_A029 5', mRNA sequence
Length = 540
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatgga 206
||||||||||||||||| ||||| || || ||||||
Sbjct: 285 tggaaatggcagaaagcacaccccaatgggtatgga 250
>gb|DR745526.1|DR745526 RTCU1_30_F04.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F04_A029 3', mRNA sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatgga 206
||||||||||||||||| ||||| || || ||||||
Sbjct: 94 tggaaatggcagaaagcacaccccaatgggtatgga 129
>gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F04_A029 5', mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.11
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 171 tggaaatggcagaaagcgcacccgaacggatatgga 206
||||||||||||||||| ||||| || || ||||||
Sbjct: 527 tggaaatggcagaaagcacaccccaatgggtatgga 562
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,308
Number of Sequences: 355925
Number of extensions: 63308
Number of successful extensions: 16691
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16668
Number of HSP's gapped (non-prelim): 23
length of query: 646
length of database: 217,277,237
effective HSP length: 19
effective length of query: 627
effective length of database: 210,514,662
effective search space: 131992693074
effective search space used: 131992693074
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)