BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440918.2.1
(1469 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CZ895070.1|CZ895070 204_1_12063805_3_37678_081 Pine meth... 42 0.064
gb|CF386681.1|CF386681 RTDR1_16_G03.b1_A015 Loblolly pine r... 40 0.25
gb|CF666909.1|CF666909 RTCNT1_27_A03.b1_A029 Root control P... 40 0.25
gb|BX679939.1|BX679939 BX679939 RS Pinus pinaster cDNA clon... 40 0.25
gb|DR015598.1|DR015598 STRS1_4_B03.g1_A034 Shoot tip pitch ... 40 0.25
gb|DR017780.1|DR017780 STRS1_18_A08.g1_A034 Shoot tip pitch... 40 0.25
gb|DR060771.1|DR060771 RTNIT1_29_H11.g1_A029 Roots minus ni... 40 0.25
gb|DR164099.1|DR164099 RTFE1_46_G03.g1_A029 Roots minus iro... 40 0.25
gb|DR686286.1|DR686286 EST1076364 Normalized pine embryo li... 40 0.25
gb|DR743557.1|DR743557 RTCU1_16_E06.g1_A029 Roots plus adde... 40 0.25
gb|DT633320.1|DT633320 EST1148251 Normalized pine embryo li... 40 0.25
gb|AF291667.1|AF291667 Pinus sylvestris class III peroxidas... 40 0.25
dbj|BD224568.1| Materials and methods for the modification ... 40 0.25
>gb|CZ895070.1|CZ895070 204_1_12063805_3_37678_081 Pine methylation filtered library
(LibID: 204) Pinus taeda genomic, DNA sequence
Length = 716
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 280 ccacttccacgactgcttcgt 300
|||||||||||||||||||||
Sbjct: 486 ccacttccacgactgcttcgt 466
>gb|CF386681.1|CF386681 RTDR1_16_G03.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_16_G03_A015 3', mRNA
sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.25
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 281 cacttccacgactgcttcgtcaggggctgcga 312
||||| |||||||||||||||| ||||||||
Sbjct: 337 cactttcacgactgcttcgtcaatggctgcga 306
>gb|CF666909.1|CF666909 RTCNT1_27_A03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_A03_A029 3', mRNA sequence
Length = 770
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 281 cacttccacgactgcttcgt 300
||||||||||||||||||||
Sbjct: 554 cacttccacgactgcttcgt 535
>gb|BX679939.1|BX679939 BX679939 RS Pinus pinaster cDNA clone RS36F06, mRNA sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.25
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 281 cacttccacgactgcttcgtcaggggctgcga 312
||||| ||||||||||| || |||||||||||
Sbjct: 183 cactttcacgactgctttgtaaggggctgcga 214
>gb|DR015598.1|DR015598 STRS1_4_B03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_4_B03_A034 5', mRNA sequence
Length = 864
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 281 cacttccacgactgcttcgt 300
||||||||||||||||||||
Sbjct: 499 cacttccacgactgcttcgt 518
>gb|DR017780.1|DR017780 STRS1_18_A08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_A08_A034 5', mRNA sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 281 cacttccacgactgcttcgt 300
||||||||||||||||||||
Sbjct: 153 cacttccacgactgcttcgt 172
>gb|DR060771.1|DR060771 RTNIT1_29_H11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_H11_A029 5', mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.25
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 280 ccacttccacgactgcttcgtcaggggctgcgacgcgtcagtgctgct 327
||||||||||||||| || ||| ||| ||||||| ||||||| ||||
Sbjct: 236 ccacttccacgactgttttgtccaggggtgcgacgggtcagtgttgct 283
>gb|DR164099.1|DR164099 RTFE1_46_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_46_G03_A029 5', mRNA sequence
Length = 860
Score = 40.1 bits (20), Expect = 0.25
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 281 cacttccacgactgcttcgtcaggggctgcga 312
||||| ||||||||||| || |||||||||||
Sbjct: 178 cactttcacgactgctttgtaaggggctgcga 209
>gb|DR686286.1|DR686286 EST1076364 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE40 3' end, mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 281 cacttccacgactgcttcgt 300
||||||||||||||||||||
Sbjct: 72 cacttccacgactgcttcgt 91
>gb|DR743557.1|DR743557 RTCU1_16_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_16_E06_A029 5', mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 281 cacttccacgactgcttcgt 300
||||||||||||||||||||
Sbjct: 230 cacttccacgactgcttcgt 249
>gb|DT633320.1|DT633320 EST1148251 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFT66 3' end, mRNA sequence
Length = 846
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 281 cacttccacgactgcttcgt 300
||||||||||||||||||||
Sbjct: 270 cacttccacgactgcttcgt 289
>gb|AF291667.1|AF291667 Pinus sylvestris class III peroxidase PSYP1 mRNA, complete cds
Length = 1294
Score = 40.1 bits (20), Expect = 0.25
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 280 ccacttccacgactgcttcgtcaggggctgcgacgcgtcagtgctgct 327
||||||||||||||| || ||| ||| ||||||| ||||||| ||||
Sbjct: 302 ccacttccacgactgttttgtccagggatgcgacgggtcagtgttgct 349
>dbj|BD224568.1| Materials and methods for the modification of plant lignin content
Length = 461
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 281 cacttccacgactgcttcgt 300
||||||||||||||||||||
Sbjct: 229 cacttccacgactgcttcgt 248
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142,331
Number of Sequences: 355925
Number of extensions: 142331
Number of successful extensions: 38985
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38970
Number of HSP's gapped (non-prelim): 15
length of query: 1469
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1450
effective length of database: 210,514,662
effective search space: 305246259900
effective search space used: 305246259900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)