BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.2
(1155 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered lo... 64 1e-008
gb|CF670903.1|CF670903 RTCNT1_53_H01.b1_A029 Root control P... 64 1e-008
gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control P... 64 1e-008
gb|CO201671.1|CO201671 RTCNT2_7_G09.b1_A029 Root control 2 ... 58 8e-007
gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 ... 58 8e-007
gb|BM367381.1|BM367381 NXLV_048_E03_F NXLV (Nsf Xylem Late ... 56 3e-006
gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered lob... 56 3e-006
gb|CF400507.1|CF400507 RTWW1_5_D03.g1_A015 Well-watered lob... 56 3e-006
gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered lo... 56 3e-006
gb|CF671517.1|CF671517 RTCNT1_57_D05.g1_A029 Root control P... 56 3e-006
gb|DR177419.1|DR177419 RTMNUT1_5_F01.b1_A029 Roots minus mi... 56 3e-006
gb|BQ633895.1|BQ633895 NXRV062_B09_F NXRV (Nsf Xylem Root w... 54 1e-005
gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control P... 54 1e-005
gb|CV033540.1|CV033540 RTNACL1_35_D11.b1_A029 Roots plus ad... 54 1e-005
gb|CO369134.1|CO369134 RTK1_45_E02.b1_A029 Roots minus pota... 52 5e-005
gb|AW698057.1|AW698057 NXNV_078_C05_F Nsf Xylem Normal wood... 48 8e-004
gb|AW985282.1|AW985282 NXNV_135_D01_F Nsf Xylem Normal wood... 48 8e-004
gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine ro... 48 8e-004
gb|CF401635.1|CF401635 RTWW1_14_C04.b1_A015 Well-watered lo... 48 8e-004
gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered lo... 48 8e-004
gb|CF402095.1|CF402095 RTWW1_20_F02.b1_A015 Well-watered lo... 48 8e-004
gb|CF402186.1|CF402186 RTWW1_20_F02.g1_A015 Well-watered lo... 48 8e-004
gb|DR745814.1|DR745814 RTCU1_32_E09.g1_A029 Roots plus adde... 48 8e-004
gb|BX250283.1|BX250283 BX250283 Pinus pinaster differenciat... 46 0.003
gb|BX255698.1|BX255698 BX255698 Pinus pinaster differenciat... 46 0.003
gb|BE241357.1|BE241357 NXNV_186_H07_F Nsf Xylem Normal wood... 46 0.003
gb|BM133679.1|BM133679 NXLV_010_G02_F NXLV (Nsf Xylem Late ... 46 0.003
gb|BQ198210.1|BQ198210 NXLV128_A12_F NXLV (Nsf Xylem Late w... 46 0.003
gb|CF385204.1|CF385204 RTDR1_2_G08.g1_A015 Loblolly pine ro... 46 0.003
gb|CF400336.1|CF400336 RTWW1_4_C07.g1_A015 Well-watered lob... 46 0.003
gb|CF401104.1|CF401104 RTWW1_10_B05.b1_A015 Well-watered lo... 46 0.003
gb|CF401342.1|CF401342 RTWW1_11_C09.g1_A015 Well-watered lo... 46 0.003
gb|CF474497.1|CF474497 RTWW2_9_G09.b1_A021 Well-watered lob... 46 0.003
gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control P... 46 0.003
gb|CO170986.1|CO170986 NDL1_18_F08.b1_A029 Needles control ... 46 0.003
gb|CO171062.1|CO171062 NDL1_18_F08.g1_A029 Needles control ... 46 0.003
gb|CO200608.1|CO200608 GEO2_8_A10.g1_A032 Root gravitropism... 46 0.003
gb|CO361957.1|CO361957 NDL2_8_E07.b1_A029 Needles control 2... 46 0.003
gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2... 46 0.003
gb|CV033562.1|CV033562 RTNACL1_35_F12.b1_A029 Roots plus ad... 46 0.003
gb|CV033650.1|CV033650 RTNACL1_35_F12.g1_A029 Roots plus ad... 46 0.003
gb|CX647323.1|CX647323 COLD1_15_G01.b1_A029 Root cold Pinus... 46 0.003
gb|CX713137.1|CX713137 RTPQ1_7_F01.b1_A032 Roots treated wi... 46 0.003
gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pin... 46 0.003
gb|DR117495.1|DR117495 RTMG1_7_G09.b1_A029 Roots minus magn... 46 0.003
gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iro... 46 0.003
gb|DR161241.1|DR161241 RTFE1_10_E01.g1_A029 Roots minus iro... 46 0.003
gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered lo... 44 0.013
gb|CF472577.1|CF472577 RTDS1_10_A06.g1_A015 Drought-stresse... 40 0.20
gb|CO200240.1|CO200240 GEO2_6_F04.b1_A032 Root gravitropism... 40 0.20
>gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_H09_A022 5', mRNA sequence
Length = 770
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| |||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 453 ggctacttccatgtggtgaacaacgattacacgcactgggaaatgtacgccatcgg 398
>gb|CF670903.1|CF670903 RTCNT1_53_H01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_H01_A029 3', mRNA sequence
Length = 763
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| |||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 100 ggctacttccatgtggtgaacaacgattacacgcactgggaaatgtacgccatcgg 155
>gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_H01_A029 5', mRNA sequence
Length = 640
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| |||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 230 ggctacttccatgtggtgaacaacgattacacgcactgggaaatgtacgccatcgg 285
>gb|CO201671.1|CO201671 RTCNT2_7_G09.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_G09_A029 3', mRNA sequence
Length = 818
Score = 58.0 bits (29), Expect = 8e-007
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 507 acggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcg 566
|||||| ||| || |||||||||||||| ||||| |||||| |||||||||||||| |
Sbjct: 36 acggctactttcatgtggtgaacaacgattacacccactgggaaatgtacgccatcggtg 95
Query: 567 gcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
| | ||||||||| |||| |||||| ||||| || ||| |||| ||||||
Sbjct: 96 gaagtgcgaaccccacaatcaacagccaaggcaatcgattcctcgcacccgac 148
>gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_G09_A029 5', mRNA sequence
Length = 837
Score = 58.0 bits (29), Expect = 8e-007
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 507 acggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcg 566
|||||| ||| || |||||||||||||| ||||| |||||| |||||||||||||| |
Sbjct: 651 acggctactttcatgtggtgaacaacgattacacccactgggaaatgtacgccatcggtg 710
Query: 567 gcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
| | ||||||||| |||| |||||| ||||| || ||| |||| ||||||
Sbjct: 711 gaagtgcgaaccccacaatcaacagccaaggcaatcgattcctcgcacccgac 763
>gb|BM367381.1|BM367381 NXLV_048_E03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_048_E03 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 507
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 255 ggctacttccacgtggtgaacaacgattacacacactgggaaatgtacgcaatcgg 310
>gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_F08_A015 5', mRNA sequence
Length = 763
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 461 ggctacttccacgtggtgaacaacgattacacacactgggaaatgtacgcaatcgg 516
>gb|CF400507.1|CF400507 RTWW1_5_D03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_D03_A015 5', mRNA sequence
Length = 738
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 178 ggctacttccacgtggtgaacaacgattacacacactgggaaatgtacgcaatcgg 233
>gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_G07_A015 5', mRNA sequence
Length = 807
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 407 ggctacttccacgtggtgaacaacgattacacacactgggaaatgtacgcaatcgg 462
>gb|CF671517.1|CF671517 RTCNT1_57_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_D05_A029 5', mRNA sequence
Length = 792
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 382 ggctacttccacgtggtgaacaacgattacacacactgggaaatgtacgcaatcgg 437
>gb|DR177419.1|DR177419 RTMNUT1_5_F01.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_5_F01_A029 3', mRNA sequence
Length = 731
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 90 ggctacttccacgtggtgaacaacgattacacacactgggaaatgtacgcaatcgg 145
>gb|BQ633895.1|BQ633895 NXRV062_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV062_B09 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 657
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactgg 547
|||| ||||||||||||||||||||| ||||| ||||||
Sbjct: 472 ggctacttccacgtggtgaacaacgattacacacactgg 510
>gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_43_G02_A029 3', mRNA sequence
Length = 655
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactgg 547
|||| ||||||||||||||||||||| ||||| ||||||
Sbjct: 171 ggctacttccacgtggtgaacaacgattacacacactgg 133
>gb|CV033540.1|CV033540 RTNACL1_35_D11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_D11_A029 3', mRNA sequence
Length = 876
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactgg 547
|||| ||||||||||||||||||||| ||||| ||||||
Sbjct: 237 ggctacttccacgtggtgaacaacgattacacacactgg 275
>gb|CO369134.1|CO369134 RTK1_45_E02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_45_E02_A029 3', mRNA sequence
Length = 811
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactgg 547
|||||||||||||||||| |||||||| ||||||
Sbjct: 142 cttccacgtggtgaacaatgactacactcactgg 175
>gb|AW698057.1|AW698057 NXNV_078_C05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_078_C05 5' similar to Arabidopsis thaliana
sequence At4g13210 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 210
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||| ||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 90 ggctacttccacgtcgtgaacaacgattacacacactgggaaatgtacgcaatcgg 145
>gb|AW985282.1|AW985282 NXNV_135_D01_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_135_D01 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 329
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||| ||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 188 ggctacttccacgtcgtgaacaacgattacacacactgggaaatgtacgcaatcgg 243
>gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_D07_A021 5', mRNA
sequence
Length = 638
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||| ||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 474 ggctacttccacgtcgtgaacaacgattacacacactgggaaatgtacgcaatcgg 529
>gb|CF401635.1|CF401635 RTWW1_14_C04.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C04_A015 3', mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||||||||| ||||| ||||| |||||| |||||||| |||||
Sbjct: 31 ggctacttccacgtggtgaataacgattacacacactgggaaatgtacgcaatcgg 86
>gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C04_A015 5', mRNA sequence
Length = 733
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||||||||| ||||| ||||| |||||| |||||||| |||||
Sbjct: 428 ggctacttccacgtggtgaataacgattacacacactgggaaatgtacgcaatcgg 483
>gb|CF402095.1|CF402095 RTWW1_20_F02.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_20_F02_A015 3', mRNA sequence
Length = 674
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||| ||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 41 ggctacttccacgtcgtgaacaacgattacacacactgggaaatgtacgcaatcgg 96
>gb|CF402186.1|CF402186 RTWW1_20_F02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_20_F02_A015 5', mRNA sequence
Length = 785
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||| ||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 323 ggctacttccacgtcgtgaacaacgattacacacactgggaaatgtacgcaatcgg 378
>gb|DR745814.1|DR745814 RTCU1_32_E09.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_32_E09_A029 5', mRNA sequence
Length = 402
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||| ||||||||| ||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 141 ggctacttccacgtcgtgaacaacgattacacacactgggaaatgtacgcaatcgg 196
>gb|BX250283.1|BX250283 BX250283 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034G10 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 621
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 37 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 87
>gb|BX255698.1|BX255698 BX255698 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP008G04 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 375 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 425
>gb|BE241357.1|BE241357 NXNV_186_H07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_186_H07 5' similar to Arabidopsis thaliana
sequence At5g63180 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 298
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 182 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 232
>gb|BM133679.1|BM133679 NXLV_010_G02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_010_G02 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 807
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 374 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 424
>gb|BQ198210.1|BQ198210 NXLV128_A12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV128_A12 5' similar to Arabidopsis thaliana
sequence At5g63180 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 507
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 359 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 409
>gb|CF385204.1|CF385204 RTDR1_2_G08.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_G08_A015 5', mRNA
sequence
Length = 680
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 347 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 397
>gb|CF400336.1|CF400336 RTWW1_4_C07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_C07_A015 5', mRNA sequence
Length = 788
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 547 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 497
>gb|CF401104.1|CF401104 RTWW1_10_B05.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_B05_A015 3', mRNA sequence
Length = 621
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 51 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 101
>gb|CF401342.1|CF401342 RTWW1_11_C09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_C09_A015 5', mRNA sequence
Length = 779
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 343 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 393
>gb|CF474497.1|CF474497 RTWW2_9_G09.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_G09_A021 3', mRNA sequence
Length = 678
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 107 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 157
>gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_D05_A029 5', mRNA sequence
Length = 583
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 485 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 535
>gb|CO170986.1|CO170986 NDL1_18_F08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_F08_A029 3', mRNA sequence
Length = 687
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 107 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 157
>gb|CO171062.1|CO171062 NDL1_18_F08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_F08_A029 5', mRNA sequence
Length = 802
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 378 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 428
>gb|CO200608.1|CO200608 GEO2_8_A10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_A10_A032 5', mRNA sequence
Length = 865
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 545 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 495
>gb|CO361957.1|CO361957 NDL2_8_E07.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 3', mRNA sequence
Length = 763
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 182 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 232
>gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 5', mRNA sequence
Length = 753
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 506 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 556
>gb|CV033562.1|CV033562 RTNACL1_35_F12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_F12_A029 3', mRNA sequence
Length = 812
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 237 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 287
>gb|CV033650.1|CV033650 RTNACL1_35_F12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_F12_A029 5', mRNA sequence
Length = 775
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 217 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 267
>gb|CX647323.1|CX647323 COLD1_15_G01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_15_G01_A029 3', mRNA sequence
Length = 721
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 174 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 224
>gb|CX713137.1|CX713137 RTPQ1_7_F01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_7_F01_A032 3', mRNA sequence
Length = 752
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 182 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 232
>gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_C02_A029 3', mRNA sequence
Length = 793
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 136 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 86
>gb|DR117495.1|DR117495 RTMG1_7_G09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G09_A029 3', mRNA sequence
Length = 878
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 313 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 363
>gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 3', mRNA sequence
Length = 799
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 233 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 183
>gb|DR161241.1|DR161241 RTFE1_10_E01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 5', mRNA sequence
Length = 791
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 514 cttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||| |||||||||||||| ||||| |||||| |||||||| |||||
Sbjct: 563 cttccatgtggtgaacaacgattacactcactgggaaatgtacgcaatcgg 513
>gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_C07_A015 5', mRNA sequence
Length = 755
Score = 44.1 bits (22), Expect = 0.013
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||||||||||||||||| ||| | |||||| |||||||| |||||
Sbjct: 432 ttccacgtggtgaacaacgattacgcacactgggaaatgtacgcaatcgg 481
>gb|CF472577.1|CF472577 RTDS1_10_A06.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_10_A06_A015 5', mRNA sequence
Length = 785
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 521 gtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||||||||||| |||||||| ||| |||||||| |||||
Sbjct: 374 gtggtgaacaacgattacacgcagtgggaaatgtacgcaatcgg 417
>gb|CO200240.1|CO200240 GEO2_6_F04.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F04_A032 3', mRNA sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 521 gtggtgaacaacgactacacgcactggatcatgtacgccatcgg 564
|||||||||||||| |||||||| ||| |||||||| |||||
Sbjct: 100 gtggtgaacaacgattacacgcaatgggaaatgtacgcaatcgg 143
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,398
Number of Sequences: 355925
Number of extensions: 93398
Number of successful extensions: 25054
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24968
Number of HSP's gapped (non-prelim): 86
length of query: 1155
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1136
effective length of database: 210,514,662
effective search space: 239144656032
effective search space used: 239144656032
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)