BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.1
(1136 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine ro... 68 9e-010
gb|DR745814.1|DR745814 RTCU1_32_E09.g1_A029 Roots plus adde... 68 9e-010
gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered lo... 66 3e-009
gb|CF670903.1|CF670903 RTCNT1_53_H01.b1_A029 Root control P... 66 3e-009
gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control P... 66 3e-009
gb|CO201671.1|CO201671 RTCNT2_7_G09.b1_A029 Root control 2 ... 66 3e-009
gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 ... 66 3e-009
gb|AW985282.1|AW985282 NXNV_135_D01_F Nsf Xylem Normal wood... 64 1e-008
gb|BM367381.1|BM367381 NXLV_048_E03_F NXLV (Nsf Xylem Late ... 60 2e-007
gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered lob... 60 2e-007
gb|CF400507.1|CF400507 RTWW1_5_D03.g1_A015 Well-watered lob... 60 2e-007
gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered lo... 60 2e-007
gb|CF671517.1|CF671517 RTCNT1_57_D05.g1_A029 Root control P... 60 2e-007
gb|DR177419.1|DR177419 RTMNUT1_5_F01.b1_A029 Roots minus mi... 60 2e-007
gb|CF402095.1|CF402095 RTWW1_20_F02.b1_A015 Well-watered lo... 58 8e-007
gb|CF402186.1|CF402186 RTWW1_20_F02.g1_A015 Well-watered lo... 58 8e-007
gb|BQ633895.1|BQ633895 NXRV062_B09_F NXRV (Nsf Xylem Root w... 56 3e-006
gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control P... 56 3e-006
gb|CV033540.1|CV033540 RTNACL1_35_D11.b1_A029 Roots plus ad... 56 3e-006
gb|AW698057.1|AW698057 NXNV_078_C05_F Nsf Xylem Normal wood... 54 1e-005
gb|BQ198210.1|BQ198210 NXLV128_A12_F NXLV (Nsf Xylem Late w... 52 5e-005
gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered lo... 52 5e-005
gb|CO369134.1|CO369134 RTK1_45_E02.b1_A029 Roots minus pota... 52 5e-005
gb|BX250283.1|BX250283 BX250283 Pinus pinaster differenciat... 50 2e-004
gb|BX255698.1|BX255698 BX255698 Pinus pinaster differenciat... 50 2e-004
gb|BE241357.1|BE241357 NXNV_186_H07_F Nsf Xylem Normal wood... 50 2e-004
gb|BM133679.1|BM133679 NXLV_010_G02_F NXLV (Nsf Xylem Late ... 50 2e-004
gb|CF385204.1|CF385204 RTDR1_2_G08.g1_A015 Loblolly pine ro... 50 2e-004
gb|CF400336.1|CF400336 RTWW1_4_C07.g1_A015 Well-watered lob... 50 2e-004
gb|CF401104.1|CF401104 RTWW1_10_B05.b1_A015 Well-watered lo... 50 2e-004
gb|CF401342.1|CF401342 RTWW1_11_C09.g1_A015 Well-watered lo... 50 2e-004
gb|CF401635.1|CF401635 RTWW1_14_C04.b1_A015 Well-watered lo... 50 2e-004
gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered lo... 50 2e-004
gb|CF472577.1|CF472577 RTDS1_10_A06.g1_A015 Drought-stresse... 50 2e-004
gb|CF474497.1|CF474497 RTWW2_9_G09.b1_A021 Well-watered lob... 50 2e-004
gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control P... 50 2e-004
gb|CO170986.1|CO170986 NDL1_18_F08.b1_A029 Needles control ... 50 2e-004
gb|CO171062.1|CO171062 NDL1_18_F08.g1_A029 Needles control ... 50 2e-004
gb|CO200240.1|CO200240 GEO2_6_F04.b1_A032 Root gravitropism... 50 2e-004
gb|CO200608.1|CO200608 GEO2_8_A10.g1_A032 Root gravitropism... 50 2e-004
gb|CO361957.1|CO361957 NDL2_8_E07.b1_A029 Needles control 2... 50 2e-004
gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2... 50 2e-004
gb|CV033562.1|CV033562 RTNACL1_35_F12.b1_A029 Roots plus ad... 50 2e-004
gb|CV033650.1|CV033650 RTNACL1_35_F12.g1_A029 Roots plus ad... 50 2e-004
gb|CX647323.1|CX647323 COLD1_15_G01.b1_A029 Root cold Pinus... 50 2e-004
gb|CX713137.1|CX713137 RTPQ1_7_F01.b1_A032 Roots treated wi... 50 2e-004
gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pin... 50 2e-004
gb|DR117495.1|DR117495 RTMG1_7_G09.b1_A029 Roots minus magn... 50 2e-004
gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iro... 50 2e-004
gb|DR161241.1|DR161241 RTFE1_10_E01.g1_A029 Roots minus iro... 50 2e-004
>gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_D07_A021 5', mRNA
sequence
Length = 638
Score = 67.9 bits (34), Expect = 9e-010
Identities = 118/146 (80%)
Strand = Plus / Minus
Query: 572 ttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgc 631
||||| |||||| |||| || |||||| ||| || ||||| |||||||| ||||||
Sbjct: 565 ttgccttggctgttgattgttgggttcgcgcttccaccgattgcgtacatttcccagtgt 506
Query: 632 gtgtagtcgttgttcaccacgtggaagaagccgtgacggcagcgcggcatccgctgcacc 691
||||| ||||||||||| ||||||||| |||| || ||||| | || || || |||||
Sbjct: 505 gtgtaatcgttgttcacgacgtggaagtagccatgtcggcatctgggtatgcgttgcacg 446
Query: 692 agccccttgccgaagtggttgaaggc 717
||||||| ||||| |||||||||||
Sbjct: 445 agcccctccccgaaatggttgaaggc 420
>gb|DR745814.1|DR745814 RTCU1_32_E09.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_32_E09_A029 5', mRNA sequence
Length = 402
Score = 67.9 bits (34), Expect = 9e-010
Identities = 118/146 (80%)
Strand = Plus / Minus
Query: 572 ttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgc 631
||||| |||||| |||| || |||||| ||| || ||||| |||||||| ||||||
Sbjct: 232 ttgccttggctgttgattgttgggttcgcgcttccaccgattgcgtacatttcccagtgt 173
Query: 632 gtgtagtcgttgttcaccacgtggaagaagccgtgacggcagcgcggcatccgctgcacc 691
||||| ||||||||||| ||||||||| |||| || ||||| | || || || |||||
Sbjct: 172 gtgtaatcgttgttcacgacgtggaagtagccatgtcggcatctgggtatgcgttgcacg 113
Query: 692 agccccttgccgaagtggttgaaggc 717
||||||| ||||| |||||||||||
Sbjct: 112 agcccctccccgaaatggttgaaggc 87
>gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_H09_A022 5', mRNA sequence
Length = 770
Score = 65.9 bits (33), Expect = 3e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
|||||||||||||| |||||||||||| |||||||||||||| |||||| |||| ||
Sbjct: 398 ccgatggcgtacatttcccagtgcgtgtaatcgttgttcaccacatggaagtagccatgt 457
Query: 668 cggca 672
|||||
Sbjct: 458 cggca 462
>gb|CF670903.1|CF670903 RTCNT1_53_H01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_H01_A029 3', mRNA sequence
Length = 763
Score = 65.9 bits (33), Expect = 3e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
|||||||||||||| |||||||||||| |||||||||||||| |||||| |||| ||
Sbjct: 155 ccgatggcgtacatttcccagtgcgtgtaatcgttgttcaccacatggaagtagccatgt 96
Query: 668 cggca 672
|||||
Sbjct: 95 cggca 91
>gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_H01_A029 5', mRNA sequence
Length = 640
Score = 65.9 bits (33), Expect = 3e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
|||||||||||||| |||||||||||| |||||||||||||| |||||| |||| ||
Sbjct: 285 ccgatggcgtacatttcccagtgcgtgtaatcgttgttcaccacatggaagtagccatgt 226
Query: 668 cggca 672
|||||
Sbjct: 225 cggca 221
>gb|CO201671.1|CO201671 RTCNT2_7_G09.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_G09_A029 3', mRNA sequence
Length = 818
Score = 65.9 bits (33), Expect = 3e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 572 ttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgc 631
||||| |||||| |||| ||||||||| || || |||||||||||||| ||||||
Sbjct: 129 ttgccttggctgttgattgtggggttcgcacttccaccgatggcgtacatttcccagtgg 70
Query: 632 gtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
||||| |||||||||||||| || ||| ||||||| |||||
Sbjct: 69 gtgtaatcgttgttcaccacatgaaagtagccgtgtcggca 29
>gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_G09_A029 5', mRNA sequence
Length = 837
Score = 65.9 bits (33), Expect = 3e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 572 ttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgc 631
||||| |||||| |||| ||||||||| || || |||||||||||||| ||||||
Sbjct: 744 ttgccttggctgttgattgtggggttcgcacttccaccgatggcgtacatttcccagtgg 685
Query: 632 gtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
||||| |||||||||||||| || ||| ||||||| |||||
Sbjct: 684 gtgtaatcgttgttcaccacatgaaagtagccgtgtcggca 644
>gb|AW985282.1|AW985282 NXNV_135_D01_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_135_D01 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 329
Score = 63.9 bits (32), Expect = 1e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 578 tggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgcgtgtag 637
|||||| |||| || |||||| ||| || ||||| |||||||| |||||| |||||
Sbjct: 273 tggctgttgattgttgggttcgcgcttccaccgattgcgtacatttcccagtgtgtgtaa 214
Query: 638 tcgttgttcaccacgtggaagaagccgtgacggcagcgcggcatccgctgcaccagcccc 697
||||||||||| ||||||||| |||| || ||||| | || || || ||||| ||||||
Sbjct: 213 tcgttgttcacgacgtggaagtagccatgtcggcatctgggtatgcgttgcacgagcccc 154
Query: 698 ttgccgaagtggttgaaggc 717
| ||||| |||||||||||
Sbjct: 153 tccccgaaatggttgaaggc 134
>gb|BM367381.1|BM367381 NXLV_048_E03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_048_E03 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 507
Score = 60.0 bits (30), Expect = 2e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| ||||||||||||||||||||| |||| ||
Sbjct: 310 ccgattgcgtacatttcccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgt 251
Query: 668 cggcagcgcggcatccgctgcaccagccccttgccgaagtggttgaaggc 717
||||| | || || || ||||| ||||| | ||||| |||||||||||
Sbjct: 250 cggcatctgggtatgcgttgcacaagcccttccccgaaatggttgaaggc 201
>gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_F08_A015 5', mRNA sequence
Length = 763
Score = 60.0 bits (30), Expect = 2e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| ||||||||||||||||||||| |||| ||
Sbjct: 516 ccgattgcgtacatttcccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgt 457
Query: 668 cggcagcgcggcatccgctgcaccagccccttgccgaagtggttgaaggc 717
||||| | || || || ||||| ||||| | ||||| |||||||||||
Sbjct: 456 cggcatctgggtatgcgttgcacaagcccttccccgaaatggttgaaggc 407
>gb|CF400507.1|CF400507 RTWW1_5_D03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_D03_A015 5', mRNA sequence
Length = 738
Score = 60.0 bits (30), Expect = 2e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| ||||||||||||||||||||| |||| ||
Sbjct: 233 ccgattgcgtacatttcccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgt 174
Query: 668 cggcagcgcggcatccgctgcaccagccccttgccgaagtggttgaaggc 717
||||| | || || || ||||| ||||| | ||||| |||||||||||
Sbjct: 173 cggcatctgggtatgcgttgcacaagcccttccccgaaatggttgaaggc 124
>gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_G07_A015 5', mRNA sequence
Length = 807
Score = 60.0 bits (30), Expect = 2e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| ||||||||||||||||||||| |||| ||
Sbjct: 462 ccgattgcgtacatttcccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgt 403
Query: 668 cggcagcgcggcatccgctgcaccagccccttgccgaagtggttgaaggc 717
||||| | || || || ||||| ||||| | ||||| |||||||||||
Sbjct: 402 cggcatctgggtatgcgttgcacaagcccttccccgaaatggttgaaggc 353
>gb|CF671517.1|CF671517 RTCNT1_57_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_D05_A029 5', mRNA sequence
Length = 792
Score = 60.0 bits (30), Expect = 2e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| ||||||||||||||||||||| |||| ||
Sbjct: 437 ccgattgcgtacatttcccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgt 378
Query: 668 cggcagcgcggcatccgctgcaccagccccttgccgaagtggttgaaggc 717
||||| | || || || ||||| ||||| | ||||| |||||||||||
Sbjct: 377 cggcatctgggtatgcgttgcacaagcccttccccgaaatggttgaaggc 328
>gb|DR177419.1|DR177419 RTMNUT1_5_F01.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_5_F01_A029 3', mRNA sequence
Length = 731
Score = 60.0 bits (30), Expect = 2e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| ||||||||||||||||||||| |||| ||
Sbjct: 145 ccgattgcgtacatttcccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgt 86
Query: 668 cggcagcgcggcatccgctgcaccagccccttgccgaagtggttgaaggc 717
||||| | || || || ||||| ||||| | ||||| |||||||||||
Sbjct: 85 cggcatctgggtatgcgttgcacaagcccttccccgaaatggttgaaggc 36
>gb|CF402095.1|CF402095 RTWW1_20_F02.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_20_F02_A015 3', mRNA sequence
Length = 674
Score = 58.0 bits (29), Expect = 8e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 572 ttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgc 631
||||| |||||| |||| || |||||| ||| || ||||| |||||||| ||||||
Sbjct: 132 ttgccttggctgttgattgttgggttcgcgcttccaccgattgcgtacatttcccagtgt 73
Query: 632 gtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
||||| ||||||||||| ||||||||| |||| || |||||
Sbjct: 72 gtgtaatcgttgttcacgacgtggaagtagccatgtcggca 32
>gb|CF402186.1|CF402186 RTWW1_20_F02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_20_F02_A015 5', mRNA sequence
Length = 785
Score = 58.0 bits (29), Expect = 8e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 572 ttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgc 631
||||| |||||| |||| || |||||| ||| || ||||| |||||||| ||||||
Sbjct: 414 ttgccttggctgttgattgttgggttcgcgcttccaccgattgcgtacatttcccagtgt 355
Query: 632 gtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
||||| ||||||||||| ||||||||| |||| || |||||
Sbjct: 354 gtgtaatcgttgttcacgacgtggaagtagccatgtcggca 314
>gb|BQ633895.1|BQ633895 NXRV062_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV062_B09 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 657
Score = 56.0 bits (28), Expect = 3e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
|||||| ||||| ||||||||||||||||||||| |||| || |||||
Sbjct: 510 ccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgtcggca 463
>gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_43_G02_A029 3', mRNA sequence
Length = 655
Score = 56.0 bits (28), Expect = 3e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
|||||| ||||| ||||||||||||||||||||| |||| || |||||
Sbjct: 133 ccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgtcggca 180
>gb|CV033540.1|CV033540 RTNACL1_35_D11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_D11_A029 3', mRNA sequence
Length = 876
Score = 56.0 bits (28), Expect = 3e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
|||||| ||||| ||||||||||||||||||||| |||| || |||||
Sbjct: 275 ccagtgtgtgtaatcgttgttcaccacgtggaagtagccatgtcggca 228
>gb|AW698057.1|AW698057 NXNV_078_C05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_078_C05 5' similar to Arabidopsis thaliana
sequence At4g13210 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 210
Score = 54.0 bits (27), Expect = 1e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 578 tggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgcgtgtag 637
|||||| |||| || |||||| ||| || ||||| |||||||| |||||| |||||
Sbjct: 175 tggctgttgattgttgggttcgcgcttccaccgattgcgtacatttcccagtgtgtgtaa 116
Query: 638 tcgttgttcaccacgtggaagaagccgtgacggca 672
||||||||||| ||||||||| |||| || |||||
Sbjct: 115 tcgttgttcacgacgtggaagtagccatgtcggca 81
>gb|BQ198210.1|BQ198210 NXLV128_A12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV128_A12 5' similar to Arabidopsis thaliana
sequence At5g63180 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 507
Score = 52.0 bits (26), Expect = 5e-005
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 409 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 350
Query: 668 cggcagcgcggcatccgctgcaccagccc 696
||||| | ||||| || ||||| |||||
Sbjct: 349 cggcanctgggcatgcgttgcactagccc 321
>gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_C07_A015 5', mRNA sequence
Length = 755
Score = 52.0 bits (26), Expect = 5e-005
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 572 ttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatgagccagtgc 631
||||| |||||| |||| || |||||| ||| || ||||| |||||||| ||||||
Sbjct: 517 ttgccttggctgttgattgttgggttcgcgcttccaccgattgcgtacatttcccagtgt 458
Query: 632 gtgtagtcgttgttcaccacgtggaa 657
| ||| ||||||||||||||||||||
Sbjct: 457 gcgtaatcgttgttcaccacgtggaa 432
>gb|CO369134.1|CO369134 RTK1_45_E02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_45_E02_A029 3', mRNA sequence
Length = 811
Score = 52.0 bits (26), Expect = 5e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaag 658
|||||| |||||||| ||||||||||||||||||
Sbjct: 175 ccagtgagtgtagtcattgttcaccacgtggaag 142
>gb|BX250283.1|BX250283 BX250283 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034G10 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 621
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 87 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 28
Query: 668 cggca 672
|||||
Sbjct: 27 cggca 23
>gb|BX255698.1|BX255698 BX255698 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP008G04 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 667
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 425 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 366
Query: 668 cggca 672
|||||
Sbjct: 365 cggca 361
>gb|BE241357.1|BE241357 NXNV_186_H07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_186_H07 5' similar to Arabidopsis thaliana
sequence At5g63180 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 298
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 232 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 173
Query: 668 cggca 672
|||||
Sbjct: 172 cggca 168
>gb|BM133679.1|BM133679 NXLV_010_G02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_010_G02 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 807
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 424 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 365
Query: 668 cggca 672
|||||
Sbjct: 364 cggca 360
>gb|CF385204.1|CF385204 RTDR1_2_G08.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_G08_A015 5', mRNA
sequence
Length = 680
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 397 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 338
Query: 668 cggca 672
|||||
Sbjct: 337 cggca 333
>gb|CF400336.1|CF400336 RTWW1_4_C07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_C07_A015 5', mRNA sequence
Length = 788
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 497 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 556
Query: 668 cggca 672
|||||
Sbjct: 557 cggca 561
>gb|CF401104.1|CF401104 RTWW1_10_B05.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_B05_A015 3', mRNA sequence
Length = 621
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 101 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 42
Query: 668 cggca 672
|||||
Sbjct: 41 cggca 37
>gb|CF401342.1|CF401342 RTWW1_11_C09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_C09_A015 5', mRNA sequence
Length = 779
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 393 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 334
Query: 668 cggca 672
|||||
Sbjct: 333 cggca 329
>gb|CF401635.1|CF401635 RTWW1_14_C04.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C04_A015 3', mRNA sequence
Length = 573
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| ||||| ||||||||||||||| |||| ||
Sbjct: 86 ccgattgcgtacatttcccagtgtgtgtaatcgttattcaccacgtggaagtagccatgt 27
Query: 668 cggca 672
|||||
Sbjct: 26 cggca 22
>gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C04_A015 5', mRNA sequence
Length = 733
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| ||||| ||||||||||||||| |||| ||
Sbjct: 483 ccgattgcgtacatttcccagtgtgtgtaatcgttattcaccacgtggaagtagccatgt 424
Query: 668 cggca 672
|||||
Sbjct: 423 cggca 419
>gb|CF472577.1|CF472577 RTDS1_10_A06.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_10_A06_A015 5', mRNA sequence
Length = 785
Score = 50.1 bits (25), Expect = 2e-004
Identities = 88/109 (80%)
Strand = Plus / Minus
Query: 564 ggaagcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatga 623
|||| |||||||| |||||| |||| || |||||| || || ||||| ||||||||
Sbjct: 461 ggaatcggttgccttggctgttgattgttgggttcgcacttccaccgattgcgtacattt 402
Query: 624 gccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
||| |||||||| |||||||||||||| || || ||||||| |||||
Sbjct: 401 cccactgcgtgtaatcgttgttcaccacatgaaaatagccgtgtcggca 353
>gb|CF474497.1|CF474497 RTWW2_9_G09.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_G09_A021 3', mRNA sequence
Length = 678
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 157 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 98
Query: 668 cggca 672
|||||
Sbjct: 97 cggca 93
>gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_D05_A029 5', mRNA sequence
Length = 583
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 535 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 476
Query: 668 cggca 672
|||||
Sbjct: 475 cggca 471
>gb|CO170986.1|CO170986 NDL1_18_F08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_F08_A029 3', mRNA sequence
Length = 687
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 157 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 98
Query: 668 cggca 672
|||||
Sbjct: 97 cggca 93
>gb|CO171062.1|CO171062 NDL1_18_F08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_F08_A029 5', mRNA sequence
Length = 802
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 428 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 369
Query: 668 cggca 672
|||||
Sbjct: 368 cggca 364
>gb|CO200240.1|CO200240 GEO2_6_F04.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F04_A032 3', mRNA sequence
Length = 713
Score = 50.1 bits (25), Expect = 2e-004
Identities = 88/109 (80%)
Strand = Plus / Minus
Query: 564 ggaagcggttgccctggctgatgatggtggggttccggctgccgccgatggcgtacatga 623
|||| |||||||| |||||| |||| || |||||| || || ||||| ||||||||
Sbjct: 187 ggaatcggttgccttggctgttgattgttgggttcgcacttccaccgattgcgtacattt 128
Query: 624 gccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtgacggca 672
||| |||||||| |||||||||||||| || || ||||||| |||||
Sbjct: 127 cccattgcgtgtaatcgttgttcaccacatgaaaatagccgtgtcggca 79
>gb|CO200608.1|CO200608 GEO2_8_A10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_A10_A032 5', mRNA sequence
Length = 865
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 495 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 554
Query: 668 cggca 672
|||||
Sbjct: 555 cggca 559
>gb|CO361957.1|CO361957 NDL2_8_E07.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 3', mRNA sequence
Length = 763
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 232 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 173
Query: 668 cggca 672
|||||
Sbjct: 172 cggca 168
>gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 5', mRNA sequence
Length = 753
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 556 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 497
Query: 668 cggca 672
|||||
Sbjct: 496 cggca 492
>gb|CV033562.1|CV033562 RTNACL1_35_F12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_F12_A029 3', mRNA sequence
Length = 812
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 287 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 228
Query: 668 cggca 672
|||||
Sbjct: 227 cggca 223
>gb|CV033650.1|CV033650 RTNACL1_35_F12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_F12_A029 5', mRNA sequence
Length = 775
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 267 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 208
Query: 668 cggca 672
|||||
Sbjct: 207 cggca 203
>gb|CX647323.1|CX647323 COLD1_15_G01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_15_G01_A029 3', mRNA sequence
Length = 721
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 224 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 165
Query: 668 cggca 672
|||||
Sbjct: 164 cggca 160
>gb|CX713137.1|CX713137 RTPQ1_7_F01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_7_F01_A032 3', mRNA sequence
Length = 752
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 232 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 173
Query: 668 cggca 672
|||||
Sbjct: 172 cggca 168
>gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_C02_A029 3', mRNA sequence
Length = 793
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 86 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 145
Query: 668 cggca 672
|||||
Sbjct: 146 cggca 150
>gb|DR117495.1|DR117495 RTMG1_7_G09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G09_A029 3', mRNA sequence
Length = 878
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 363 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 304
Query: 668 cggca 672
|||||
Sbjct: 303 cggca 299
>gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 3', mRNA sequence
Length = 799
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 183 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 242
Query: 668 cggca 672
|||||
Sbjct: 243 cggca 247
>gb|DR161241.1|DR161241 RTFE1_10_E01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 5', mRNA sequence
Length = 791
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 608 ccgatggcgtacatgagccagtgcgtgtagtcgttgttcaccacgtggaagaagccgtga 667
||||| |||||||| |||||| ||||| |||||||||||||| |||||| | |||||
Sbjct: 513 ccgattgcgtacatttcccagtgagtgtaatcgttgttcaccacatggaagtacccgtgt 572
Query: 668 cggca 672
|||||
Sbjct: 573 cggca 577
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,263
Number of Sequences: 355925
Number of extensions: 99263
Number of successful extensions: 27461
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27367
Number of HSP's gapped (non-prelim): 88
length of query: 1136
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1117
effective length of database: 210,514,662
effective search space: 235144877454
effective search space used: 235144877454
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)