BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI725069.1|AI725069 968 PtIFG2 Pinus taeda cDNA clone 88... 90 1e-016
gb|BQ702419.1|BQ702419 NXSI_128_D09_F NXSI (Nsf Xylem Side ... 90 1e-016
gb|DR011398.1|DR011398 HEAT1_5_B01.g1_A029 Root at 37 C for... 90 1e-016
gb|DR386909.1|DR386909 RTHG1_18_E04.b1_A029 Roots plus adde... 90 1e-016
gb|DR386993.1|DR386993 RTHG1_18_E04.g1_A029 Roots plus adde... 90 1e-016
gb|BE186991.1|BE186991 NXNV_157_C09_F Nsf Xylem Normal wood... 84 8e-015
gb|BG275115.1|BG275115 NXSI_140_A08_F NXSI (Nsf Xylem Side ... 84 8e-015
gb|BX682833.1|BX682833 BX682833 Pinus pinaster differenciat... 84 8e-015
gb|DR014658.1|DR014658 HEAT1_50_G04.g1_A029 Root at 37 C fo... 84 8e-015
gb|DR688650.1|DR688650 EST1078735 Normalized pine embryo li... 84 8e-015
gb|DT634676.1|DT634676 EST1149607 Normalized pine embryo li... 84 8e-015
gb|DR054550.1|DR054550 RTCA1_18_C03.b1_A029 Roots minus cal... 82 3e-014
gb|DR054628.1|DR054628 RTCA1_18_C03.g1_A029 Roots minus cal... 82 3e-014
gb|BF778304.1|BF778304 NXSI_080_F05_F NXSI (Nsf Xylem Side ... 74 7e-012
gb|BF778689.1|BF778689 NXSI_090_G07_F NXSI (Nsf Xylem Side ... 74 7e-012
gb|BG275589.1|BG275589 NXSI_143_F05_F NXSI (Nsf Xylem Side ... 74 7e-012
gb|CR393670.1|CR393670 CR393670 RN Pinus pinaster cDNA clon... 68 5e-010
gb|BQ700454.1|BQ700454 NXRV105_H06_F NXRV (Nsf Xylem Root w... 66 2e-009
gb|BQ702443.1|BQ702443 NXSI_128_G01_F NXSI (Nsf Xylem Side ... 66 2e-009
gb|CD021624.1|CD021624 NXNV_158_B04_F Nsf Xylem Normal wood... 66 2e-009
gb|DN609444.1|DN609444 EST962494 Subtracted pine embryo lib... 66 2e-009
gb|DN609958.1|DN609958 EST963008 Subtracted pine embryo lib... 66 2e-009
gb|DT627623.1|DT627623 EST1156372 Subtracted pine embryo li... 66 2e-009
gb|DT627893.1|DT627893 EST1156642 Subtracted pine embryo li... 66 2e-009
gb|BX251364.1|BX251364 BX251364 Pinus pinaster differenciat... 60 1e-007
gb|CO163222.1|CO163222 FLD1_40_F04.b1_A029 Root flooded Pin... 60 1e-007
gb|BX250295.1|BX250295 BX250295 Pinus pinaster differenciat... 56 2e-006
gb|BX682858.1|BX682858 BX682858 Pinus pinaster differenciat... 52 3e-005
gb|BX683008.1|BX683008 BX683008 Pinus pinaster differenciat... 52 3e-005
gb|CD017085.1|CD017085 NXCI_068_E12_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|DR691205.1|DR691205 EST1081291 Normalized pine embryo li... 48 4e-004
gb|DT636467.1|DT636467 EST1151398 Normalized pine embryo li... 48 4e-004
gb|BF010480.1|BF010480 NXCI_084_D10_F NXCI (Nsf Xylem Compr... 42 0.026
gb|DR081612.1|DR081612 RTFEPL1_31_A01.b1_A029 Roots plus ad... 42 0.026
gb|DR092746.1|DR092746 STRR1_3_D12.g1_A033 Stem Response Re... 42 0.026
gb|DR182092.1|DR182092 RTMNUT1_42_G10.g1_A029 Roots minus m... 42 0.026
gb|BQ698877.1|BQ698877 NXRV116_E05_F NXRV (Nsf Xylem Root w... 38 0.40
gb|CV035666.1|CV035666 RTNACL1_41_D01.g1_A029 Roots plus ad... 38 0.40
gb|DN631002.1|DN631002 EST981818 Subtracted pine embryo lib... 38 0.40
gb|DT630174.1|DT630174 EST1154586 Subtracted pine embryo li... 38 0.40
dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, co... 38 0.40
gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome 38 0.40
ref|NC_001631.1| Pinus thunbergii chloroplast, complete genome 38 0.40
ref|NC_004677.1| Pinus koraiensis chloroplast, complete genome 38 0.40
>gb|AI725069.1|AI725069 968 PtIFG2 Pinus taeda cDNA clone 8887r, mRNA sequence
Length = 667
Score = 89.7 bits (45), Expect = 1e-016
Identities = 126/153 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 214 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 155
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 154 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 95
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||||||| |||||||||||
Sbjct: 94 ccatttattcccaatcacctttccgcaggtgaa 62
>gb|BQ702419.1|BQ702419 NXSI_128_D09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_D09 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 89.7 bits (45), Expect = 1e-016
Identities = 126/153 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 216 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 157
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 156 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 97
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||||||| |||||||||||
Sbjct: 96 ccatttattcccaatcacctttccgcaggtgaa 64
>gb|DR011398.1|DR011398 HEAT1_5_B01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B01_A029 5', mRNA sequence
Length = 552
Score = 89.7 bits (45), Expect = 1e-016
Identities = 126/153 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 198 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 139
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 138 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 79
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||||||| |||||||||||
Sbjct: 78 ccatttattcccaatcacctttccgcaggtgaa 46
>gb|DR386909.1|DR386909 RTHG1_18_E04.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_E04_A029 3', mRNA sequence
Length = 550
Score = 89.7 bits (45), Expect = 1e-016
Identities = 126/153 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 217 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 158
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 157 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 98
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||||||| |||||||||||
Sbjct: 97 ccatttattcccaatcacctttccgcaggtgaa 65
>gb|DR386993.1|DR386993 RTHG1_18_E04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_E04_A029 5', mRNA sequence
Length = 528
Score = 89.7 bits (45), Expect = 1e-016
Identities = 126/153 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 198 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 139
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 138 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 79
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||||||| |||||||||||
Sbjct: 78 ccatttattcccaatcacctttccgcaggtgaa 46
>gb|BE186991.1|BE186991 NXNV_157_C09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_157_C09 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 316
Score = 83.8 bits (42), Expect = 8e-015
Identities = 125/153 (81%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| || || |||||||| | | ||| |
Sbjct: 206 cttctcgatgagatcaacatgagtcatcagcatacgnctacagcagtatctcaccaaccc 147
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 146 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 87
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||||||| |||||||||||
Sbjct: 86 ccatttattcccaatcacctttccgcaggtgaa 54
>gb|BG275115.1|BG275115 NXSI_140_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_140_A08 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 83.8 bits (42), Expect = 8e-015
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||||||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 224 cttctcaatgagatcaacatgagtcataagcatacgcctacagcagtatctcaccaaccc 165
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||
Sbjct: 164 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtacgtatc 105
Query: 454 ccacttgttcccaatcaccttgccgcaggt 483
||| || |||||||||||||| ||||||||
Sbjct: 104 ccatttattcccaatcacctttccgcaggt 75
>gb|BX682833.1|BX682833 BX682833 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122E04, mRNA sequence
Length = 615
Score = 83.8 bits (42), Expect = 8e-015
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||||||||| ||||| |||||||| | | ||| |
Sbjct: 250 cttctcgatgagatcaacatgagtcatgagcatacgcctacagcagtatctcaccaaccc 191
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||
Sbjct: 190 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtacgtatc 131
Query: 454 ccacttgttcccaatcaccttgccgcaggt 483
||| || |||||||||||||| ||||||||
Sbjct: 130 ccatttattcccaatcacctttccgcaggt 101
>gb|DR014658.1|DR014658 HEAT1_50_G04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_G04_A029 5', mRNA sequence
Length = 808
Score = 83.8 bits (42), Expect = 8e-015
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||||||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 285 cttctcaatgagatcaacatgagtcataagcatacgcctacagcagtatctcaccaaccc 344
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||
Sbjct: 345 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtacgtatc 404
Query: 454 ccacttgttcccaatcaccttgccgcaggt 483
||| || |||||||||||||| ||||||||
Sbjct: 405 ccatttattcccaatcacctttccgcaggt 434
>gb|DR688650.1|DR688650 EST1078735 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC887 3' end, mRNA sequence
Length = 503
Score = 83.8 bits (42), Expect = 8e-015
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||||||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 184 cttctcaatgagatcaacatgagtcataagcatacgcctacagcagtatctcaccaaccc 125
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||
Sbjct: 124 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtacgtatc 65
Query: 454 ccacttgttcccaatcaccttgccgcaggt 483
||| || |||||||||||||| ||||||||
Sbjct: 64 ccatttattcccaatcacctttccgcaggt 35
>gb|DT634676.1|DT634676 EST1149607 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG860 3' end, mRNA sequence
Length = 511
Score = 83.8 bits (42), Expect = 8e-015
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||||||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 192 cttctcaatgagatcaacatgagtcataagcatacgcctacagcagtatctcaccaaccc 133
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||
Sbjct: 132 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtacgtatc 73
Query: 454 ccacttgttcccaatcaccttgccgcaggt 483
||| || |||||||||||||| ||||||||
Sbjct: 72 ccatttattcccaatcacctttccgcaggt 43
>gb|DR054550.1|DR054550 RTCA1_18_C03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_C03_A029 3', mRNA sequence
Length = 769
Score = 81.8 bits (41), Expect = 3e-014
Identities = 125/153 (81%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 225 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 166
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 165 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 106
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||||||| ||||| |||||
Sbjct: 105 ccatttattcccaatcacctttccgcaagtgaa 73
>gb|DR054628.1|DR054628 RTCA1_18_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_C03_A029 5', mRNA sequence
Length = 771
Score = 81.8 bits (41), Expect = 3e-014
Identities = 125/153 (81%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 220 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 161
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 160 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 101
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||||||| ||||| |||||
Sbjct: 100 ccatttattcccaatcacctttccgcaagtgaa 68
>gb|BF778304.1|BF778304 NXSI_080_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_080_F05 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 280
Score = 73.8 bits (37), Expect = 7e-012
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 398 gcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtcccac 457
||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||||||
Sbjct: 160 gcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtcccat 101
Query: 458 ttgttcccaatcaccttgccgcaggtgaa 486
|| |||||||||||||| |||||||||||
Sbjct: 100 ttattcccaatcacctttccgcaggtgaa 72
>gb|BF778689.1|BF778689 NXSI_090_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_090_G07 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 233
Score = 73.8 bits (37), Expect = 7e-012
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 398 gcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtcccac 457
||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||||||
Sbjct: 152 gcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtcccat 93
Query: 458 ttgttcccaatcaccttgccgcaggtgaa 486
|| |||||||||||||| |||||||||||
Sbjct: 92 ttattcccaatcacctttccgcaggtgaa 64
>gb|BG275589.1|BG275589 NXSI_143_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_143_F05 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 73.8 bits (37), Expect = 7e-012
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 398 gcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtcccac 457
||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||||||
Sbjct: 133 gcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtcccat 74
Query: 458 ttgttcccaatcaccttgccgcaggtgaa 486
|| |||||||||||||| |||||||||||
Sbjct: 73 ttattcccaatcacctttccgcaggtgaa 45
>gb|CR393670.1|CR393670 CR393670 RN Pinus pinaster cDNA clone RN63C03, mRNA sequence
Length = 595
Score = 67.9 bits (34), Expect = 5e-010
Identities = 94/114 (82%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||||||||| ||||| |||||||| | | ||| |
Sbjct: 189 cttctcgatgagatcaacatgagtcatgagcatacgcctacagcagtatctcaccaaccc 130
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggta 447
|| ||||| ||||| |||||||| | ||||||||||| || |||||||||||
Sbjct: 129 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggta 76
>gb|BQ700454.1|BQ700454 NXRV105_H06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_H06 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 65.9 bits (33), Expect = 2e-009
Identities = 124/153 (81%), Gaps = 1/153 (0%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||| | |||||||| | | ||| |
Sbjct: 241 cttctcgatgagatcaacatgagtcatcagcatacgcatacagcagtatctcaccaaccc 182
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 181 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 122
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaa 486
||| || |||||||||| ||| |||||||||||
Sbjct: 121 ccatttattcccaatca-ctttccgcaggtgaa 90
>gb|BQ702443.1|BQ702443 NXSI_128_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_G01 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 65.9 bits (33), Expect = 2e-009
Identities = 120/150 (80%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||||||||| |||||||| ||||| ||||| || |||||||| | | ||| |
Sbjct: 207 cttctcaatgagatcaacatgagtcataagcatacgnnnacagcagtatctcaccaaccc 148
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
|| ||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||
Sbjct: 147 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtacgtatc 88
Query: 454 ccacttgttcccaatcaccttgccgcaggt 483
||| || |||||||||||||| ||||||||
Sbjct: 87 ccatttattcccaatcacctttccgcaggt 58
>gb|CD021624.1|CD021624 NXNV_158_B04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_158_B04 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 160
Score = 65.9 bits (33), Expect = 2e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||| || ||||||||||| |||||| || |||||||||||||| ||||||
Sbjct: 111 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 52
Query: 482 gtgaa 486
|||||
Sbjct: 51 gtgaa 47
>gb|DN609444.1|DN609444 EST962494 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAC94, mRNA sequence
Length = 477
Score = 65.9 bits (33), Expect = 2e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||| || ||||||||||| |||||| || |||||||||||||| ||||||
Sbjct: 318 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 377
Query: 482 gtgaa 486
|||||
Sbjct: 378 gtgaa 382
>gb|DN609958.1|DN609958 EST963008 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAJ67, mRNA sequence
Length = 477
Score = 65.9 bits (33), Expect = 2e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||| || ||||||||||| |||||| || |||||||||||||| ||||||
Sbjct: 318 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 377
Query: 482 gtgaa 486
|||||
Sbjct: 378 gtgaa 382
>gb|DT627623.1|DT627623 EST1156372 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCO70 5' end, mRNA sequence
Length = 477
Score = 65.9 bits (33), Expect = 2e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||| || ||||||||||| |||||| || |||||||||||||| ||||||
Sbjct: 160 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 101
Query: 482 gtgaa 486
|||||
Sbjct: 100 gtgaa 96
>gb|DT627893.1|DT627893 EST1156642 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCR88 5' end, mRNA sequence
Length = 477
Score = 65.9 bits (33), Expect = 2e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcag 481
||||||||||| || ||||||||||| |||||| || |||||||||||||| ||||||
Sbjct: 160 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 101
Query: 482 gtgaa 486
|||||
Sbjct: 100 gtgaa 96
>gb|BX251364.1|BX251364 BX251364 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP048G01 similar to DNA DIRECTED RNA
POLYMERASE, mRNA sequence
Length = 477
Score = 60.0 bits (30), Expect = 1e-007
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 128 cttctcgatgagatcaacatgagtcataagcatacgcctacagcagtatctcaccaaccc 69
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggta 447
|| ||||| ||||| |||||||| | ||||||||||| || |||||||||||
Sbjct: 68 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggta 15
>gb|CO163222.1|CO163222 FLD1_40_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_F04_A029 3', mRNA sequence
Length = 840
Score = 60.0 bits (30), Expect = 1e-007
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 514 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 455
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggta 447
|| ||||| ||||| |||||||| | ||||||||||| || |||||||||||
Sbjct: 454 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggta 401
>gb|BX250295.1|BX250295 BX250295 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035A03 similar to DNA DIRECTED RNA
POLYMERASE, mRNA sequence
Length = 466
Score = 56.0 bits (28), Expect = 2e-006
Identities = 91/112 (81%)
Strand = Plus / Minus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 112 cttctcgatgagatcaacatgagtcataagcatacgcctacagcagtatctcaccaaccc 53
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgagg 445
|| ||||| ||||| |||||||| | ||||||||||| || |||||||||
Sbjct: 52 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgagg 1
>gb|BX682858.1|BX682858 BX682858 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122G09 similar to DNA-directed RNA polymerase
II, mRNA sequence
Length = 633
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcag 379
|||||| ||||| |||||||| ||||||||||| ||||| ||||||
Sbjct: 485 cttctcgatgagatcaacatgagtcatgagcatacgcctacagcag 530
>gb|BX683008.1|BX683008 BX683008 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126H09 similar to DNA-directed RNA polymerase
II, mRNA sequence
Length = 631
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcag 379
|||||| ||||| |||||||| ||||||||||| ||||| ||||||
Sbjct: 486 cttctcgatgagatcaacatgagtcatgagcatacgcctacagcag 531
>gb|CD017085.1|CD017085 NXCI_068_E12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_068_E12 5' similar to Arabidopsis
thaliana sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 157
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacctt 474
||||||||||| || ||||||||||| |||||| || ||||||||||||||
Sbjct: 112 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctt 60
>gb|DR691205.1|DR691205 EST1081291 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD551 3' end, mRNA sequence
Length = 615
Score = 48.1 bits (24), Expect = 4e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
||||||||||| || ||||||||||| |||||| || |||||||||||||
Sbjct: 376 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacct 325
>gb|DT636467.1|DT636467 EST1151398 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGS19 3' end, mRNA sequence
Length = 846
Score = 48.1 bits (24), Expect = 4e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 422 tagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 473
||||||||||| || ||||||||||| |||||| || |||||||||||||
Sbjct: 384 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacct 333
>gb|BF010480.1|BF010480 NXCI_084_D10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_084_D10 5' similar to Arabidopsis
thaliana sequence At5g19820 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 512 gccgccgccgccgcagctgga 532
|||||||||||||||||||||
Sbjct: 36 gccgccgccgccgcagctgga 16
>gb|DR081612.1|DR081612 RTFEPL1_31_A01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_31_A01_A029 3', mRNA sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 202 aatcctgatagagaagaaaca 222
|||||||||||||||||||||
Sbjct: 654 aatcctgatagagaagaaaca 674
>gb|DR092746.1|DR092746 STRR1_3_D12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_3_D12_A033 5', mRNA sequence
Length = 835
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 202 aatcctgatagagaagaaaca 222
|||||||||||||||||||||
Sbjct: 27 aatcctgatagagaagaaaca 7
>gb|DR182092.1|DR182092 RTMNUT1_42_G10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_42_G10_A029 5', mRNA sequence
Length = 795
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 202 aatcctgatagagaagaaaca 222
|||||||||||||||||||||
Sbjct: 277 aatcctgatagagaagaaaca 257
>gb|BQ698877.1|BQ698877 NXRV116_E05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV116_E05 5', mRNA sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 56 aaattgggacagagacaca 74
|||||||||||||||||||
Sbjct: 311 aaattgggacagagacaca 329
>gb|CV035666.1|CV035666 RTNACL1_41_D01.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_D01_A029 5', mRNA sequence
Length = 850
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 56 aaattgggacagagacaca 74
|||||||||||||||||||
Sbjct: 634 aaattgggacagagacaca 652
>gb|DN631002.1|DN631002 EST981818 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAC281, mRNA sequence
Length = 404
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 56 aaattgggacagagacaca 74
|||||||||||||||||||
Sbjct: 104 aaattgggacagagacaca 86
>gb|DT630174.1|DT630174 EST1154586 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME581, mRNA sequence
Length = 424
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 56 aaattgggacagagacaca 74
|||||||||||||||||||
Sbjct: 124 aaattgggacagagacaca 106
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence
Length = 119707
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 56 aaattgggacagagacaca 74
|||||||||||||||||||
Sbjct: 56559 aaattgggacagagacaca 56541
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome
Length = 116866
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 56 aaattgggacagagacaca 74
|||||||||||||||||||
Sbjct: 54640 aaattgggacagagacaca 54622
>ref|NC_001631.1| Pinus thunbergii chloroplast, complete genome
Length = 119707
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 56 aaattgggacagagacaca 74
|||||||||||||||||||
Sbjct: 56559 aaattgggacagagacaca 56541
>ref|NC_004677.1| Pinus koraiensis chloroplast, complete genome
Length = 116866
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 56 aaattgggacagagacaca 74
|||||||||||||||||||
Sbjct: 54640 aaattgggacagagacaca 54622
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,422
Number of Sequences: 355925
Number of extensions: 73422
Number of successful extensions: 23285
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23193
Number of HSP's gapped (non-prelim): 86
length of query: 608
length of database: 217,277,237
effective HSP length: 19
effective length of query: 589
effective length of database: 210,514,662
effective search space: 123993135918
effective search space used: 123993135918
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)