BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.1
(1264 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI813230.1|AI813230 3E5 Pine Lambda Zap Xylem library Pi... 96 4e-018
gb|BX254710.1|BX254710 BX254710 Pinus pinaster differenciat... 96 4e-018
gb|CV034628.1|CV034628 RTNACL1_10_B08.g1_A029 Roots plus ad... 96 4e-018
gb|DR020121.1|DR020121 STRS1_34_F06.g1_A034 Shoot tip pitch... 96 4e-018
gb|DR058193.1|DR058193 RTNIT1_10_G08.b1_A029 Roots minus ni... 96 4e-018
gb|DR070290.1|DR070290 RTDK1_12_A01.g1_A029 Roots, dark Pin... 96 4e-018
gb|DR160216.1|DR160216 RTFE1_4_D07.g1_A029 Roots minus iron... 96 4e-018
gb|DR179388.1|DR179388 RTMNUT1_21_G02.g2_A029 Roots minus m... 96 4e-018
gb|DR683351.1|DR683351 EST1073427 Normalized pine embryo li... 96 4e-018
gb|DR688541.1|DR688541 EST1078626 Normalized pine embryo li... 96 4e-018
gb|DR691905.1|DR691905 EST1081992 Normalized pine embryo li... 96 4e-018
gb|DR691998.1|DR691998 EST1082085 Normalized pine embryo li... 96 4e-018
gb|DR744374.1|DR744374 RTCU1_22_B12.b1_A029 Roots plus adde... 96 4e-018
gb|DN627717.1|DN627717 EST978533 Subtracted pine embryo lib... 88 1e-015
gb|DN631846.1|DN631846 EST982662 Subtracted pine embryo lib... 88 1e-015
gb|DN633594.1|DN633594 EST984410 Subtracted pine embryo lib... 88 1e-015
gb|DT629937.1|DT629937 EST1154349 Subtracted pine embryo li... 88 1e-015
gb|CD022023.1|CD022023 NXNV_187_C12_F Nsf Xylem Normal wood... 84 2e-014
gb|DN633050.1|DN633050 EST983866 Subtracted pine embryo lib... 84 2e-014
gb|DT630617.1|DT630617 EST1155029 Subtracted pine embryo li... 84 2e-014
gb|DR695299.1|DR695299 EST1085392 Normalized pine embryo li... 80 3e-013
gb|DR688931.1|DR688931 EST1079017 Normalized pine embryo li... 74 2e-011
gb|DN626792.1|DN626792 EST977608 Subtracted pine embryo lib... 62 6e-008
gb|BX250828.1|BX250828 BX250828 Pinus pinaster differenciat... 60 2e-007
gb|BX682353.2|BX682353 BX682353 Pinus pinaster differenciat... 60 2e-007
gb|DR020043.1|DR020043 STRS1_34_F06.b1_A034 Shoot tip pitch... 60 2e-007
gb|DR070204.1|DR070204 RTDK1_12_A01.b1_A029 Roots, dark Pin... 56 4e-006
gb|BQ697926.1|BQ697926 NXPV_062_E11_F NXPV (Nsf Xylem Plani... 52 6e-005
gb|CF473586.1|CF473586 RTWW2_3_D10.g1_A021 Well-watered lob... 52 6e-005
gb|CO159685.1|CO159685 FLD1_15_D05.b1_A029 Root flooded Pin... 52 6e-005
gb|CO370563.1|CO370563 RTK1_68_E06.g1_A029 Roots minus pota... 52 6e-005
gb|DR079445.1|DR079445 RTFEPL1_11_G04.b1_A029 Roots plus ad... 52 6e-005
gb|DR179313.1|DR179313 RTMNUT1_21_G02.b2_A029 Roots minus m... 48 9e-004
gb|DR386262.1|DR386262 RTHG1_14_A08.b1_A029 Roots plus adde... 48 9e-004
gb|BX249114.1|BX249114 BX249114 Pinus pinaster differenciat... 44 0.014
gb|BI398034.1|BI398034 NXPV_113_F09_F NXPV (Nsf Xylem Plani... 44 0.014
gb|CV034563.1|CV034563 RTNACL1_10_B08.b1_A029 Roots plus ad... 44 0.014
gb|AI812933.1|AI812933 22F2 Pine Lambda Zap Xylem library P... 40 0.22
gb|BF518088.1|BF518088 NXSI_030_H01_F NXSI (Nsf Xylem Side ... 40 0.22
gb|BG526934.1|BG526934 NXPV_057_E10_F NXPV (Nsf Xylem Plani... 40 0.22
gb|BQ702406.1|BQ702406 NXSI_128_C09_F NXSI (Nsf Xylem Side ... 40 0.22
gb|CF392987.1|CF392987 RTDR3_18_G03.b1_A022 Loblolly pine r... 40 0.22
gb|CF666818.1|CF666818 RTCNT1_26_H05.b1_A029 Root control P... 40 0.22
gb|CO201192.1|CO201192 RTCNT2_4_E06.b1_A029 Root control 2 ... 40 0.22
gb|CO201272.1|CO201272 RTCNT2_4_E06.g1_A029 Root control 2 ... 40 0.22
gb|CX650023.1|CX650023 COLD1_43_B07.b1_A029 Root cold Pinus... 40 0.22
gb|CX650099.1|CX650099 COLD1_43_B07.g1_A029 Root cold Pinus... 40 0.22
gb|DR014189.1|DR014189 HEAT1_24_A03.b1_A029 Root at 37 C fo... 40 0.22
gb|DR014264.1|DR014264 HEAT1_24_A03.g1_A029 Root at 37 C fo... 40 0.22
gb|DR019950.1|DR019950 STRS1_33_D01.g1_A034 Shoot tip pitch... 40 0.22
gb|DR052863.1|DR052863 RTCA1_7_H08.b1_A029 Roots minus calc... 40 0.22
gb|DR052948.1|DR052948 RTCA1_7_H08.g1_A029 Roots minus calc... 40 0.22
gb|DR099392.1|DR099392 STRR1_55_F08.b1_A033 Stem Response R... 40 0.22
gb|DR743881.1|DR743881 RTCU1_18_E12.g1_A029 Roots plus adde... 40 0.22
>gb|AI813230.1|AI813230 3E5 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 771
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 294 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 235
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 234 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 175
Score = 60.0 bits (30), Expect = 2e-007
Identities = 231/298 (77%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 705 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 646
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 645 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 586
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 585 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 526
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 525 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 466
Query: 918 gctgaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccaga 975
||||| || |||||| | |||| |||||||||||||| ||||| || || |||||||
Sbjct: 465 gctgagtagatatgtttgacaagaggcattttctttatgaaccattctccaacccaga 408
>gb|BX254710.1|BX254710 BX254710 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP103A06, mRNA sequence
Length = 581
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 537 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 478
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 477 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 418
>gb|CV034628.1|CV034628 RTNACL1_10_B08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_10_B08_A029 5', mRNA sequence
Length = 745
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 265 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 206
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 205 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 146
Score = 56.0 bits (28), Expect = 4e-006
Identities = 127/160 (79%)
Strand = Plus / Minus
Query: 816 ccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtc 875
||||| |||||||| || | |||||||||||||| |||||||| ||||| || || |
Sbjct: 538 ccaaaggcatattcccctacacgtggatgacgaataattgcaacctctttaaaggccctt 479
Query: 876 gtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtctt 935
|| || || ||||| ||||| |||| || | |||||| || ||||| || |||||| |
Sbjct: 478 gtgttctggtctggagaaatggcagcacttatttgcttcgaggctgagtagatatgtttg 419
Query: 936 acaaatggcattttctttataaaccactcgcccacccaga 975
|||| |||||||||||||| ||||| || || |||||||
Sbjct: 418 acaagaggcattttctttatgaaccattctccaacccaga 379
>gb|DR020121.1|DR020121 STRS1_34_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_F06_A034 5', mRNA sequence
Length = 781
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 255 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 196
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 195 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 136
Score = 60.0 bits (30), Expect = 2e-007
Identities = 231/298 (77%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 666 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 607
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 606 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 547
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 546 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 487
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 486 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 427
Query: 918 gctgaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccaga 975
||||| || |||||| | |||| |||||||||||||| ||||| || || |||||||
Sbjct: 426 gctgagtagatatgtttgacaagaggcattttctttatgaaccattctccaacccaga 369
>gb|DR058193.1|DR058193 RTNIT1_10_G08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_10_G08_A029 3', mRNA sequence
Length = 685
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 178 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 237
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 238 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 297
>gb|DR070290.1|DR070290 RTDK1_12_A01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_A01_A029 5', mRNA sequence
Length = 712
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 508 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 449
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 448 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 389
Score = 40.1 bits (20), Expect = 0.22
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 908 ttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaaccactcgcc 967
|||||| || ||||| || |||||| | |||| |||||||||||||| ||||| || ||
Sbjct: 689 ttgcttcgaggctgagtagatatgtttgacaagaggcattttctttatgaaccattctcc 630
Query: 968 cacccaga 975
|||||||
Sbjct: 629 aacccaga 622
>gb|DR160216.1|DR160216 RTFE1_4_D07.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_4_D07_A029 5', mRNA sequence
Length = 807
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 511 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 452
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 451 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 392
Score = 48.1 bits (24), Expect = 9e-004
Identities = 127/160 (79%), Gaps = 1/160 (0%)
Strand = Plus / Minus
Query: 816 ccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtc 875
||||| |||||||| || | |||||||||||||| |||||||| ||||| || || |
Sbjct: 783 ccaaaggcatattcccctacacgtggatgacgaataattgcaacctctttaaaggccctt 724
Query: 876 gtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtctt 935
|| || || ||||| ||||| |||| || | |||||| || ||||| || |||||| |
Sbjct: 723 gtgttctggtctggagaaatggcagcacttatttgcttcgaggctgagtagatatgtttg 664
Query: 936 acaaatggcattttctttataaaccactcgcccacccaga 975
|| || |||||||||||||| ||||| || || |||||||
Sbjct: 663 ac-aagggcattttctttatgaaccattctccaacccaga 625
>gb|DR179388.1|DR179388 RTMNUT1_21_G02.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_G02_A029 5', mRNA sequence
Length = 412
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 256 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 197
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 196 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 137
>gb|DR683351.1|DR683351 EST1073427 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG18 3' end, mRNA sequence
Length = 753
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 296 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 237
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 236 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 177
Score = 60.0 bits (30), Expect = 2e-007
Identities = 231/298 (77%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 707 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 648
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 647 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 588
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 587 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 528
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 527 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 468
Query: 918 gctgaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccaga 975
||||| || |||||| | |||| |||||||||||||| ||||| || || |||||||
Sbjct: 467 gctgagtagatatgtttgacaagaggcattttctttatgaaccattctccaacccaga 410
>gb|DR688541.1|DR688541 EST1078626 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC757 3' end, mRNA sequence
Length = 906
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 347 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 288
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 287 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 228
Score = 56.0 bits (28), Expect = 4e-006
Identities = 127/160 (79%)
Strand = Plus / Minus
Query: 816 ccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtc 875
||||| |||||||| || | |||||||||||||| |||||||| ||||| || || |
Sbjct: 620 ccaaaggcatattcccctacacgtggatgacgaataattgcaacctctttaaaggccctt 561
Query: 876 gtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtctt 935
|| || || ||||| ||||| |||| || | |||||| || ||||| || |||||| |
Sbjct: 560 gtgttctggtctggagaaatggcagcacttatttgcttcgaggctgagtagatatgtttg 501
Query: 936 acaaatggcattttctttataaaccactcgcccacccaga 975
|||| |||||||||||||| ||||| || || |||||||
Sbjct: 500 acaagaggcattttctttatgaaccattctccaacccaga 461
>gb|DR691905.1|DR691905 EST1081992 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADF49 3' end, mRNA sequence
Length = 768
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 654 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 595
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 594 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 535
>gb|DR691998.1|DR691998 EST1082085 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADG73 3' end, mRNA sequence
Length = 744
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 531 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 472
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 471 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 412
Score = 40.1 bits (20), Expect = 0.22
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 908 ttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaaccactcgcc 967
|||||| || ||||| || |||||| | |||| |||||||||||||| ||||| || ||
Sbjct: 712 ttgcttcgaggctgagtagatatgtttgacaagaggcattttctttatgaaccattctcc 653
Query: 968 cacccaga 975
|||||||
Sbjct: 652 aacccaga 645
>gb|DR744374.1|DR744374 RTCU1_22_B12.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_22_B12_A029 3', mRNA sequence
Length = 745
Score = 95.6 bits (48), Expect = 4e-018
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 138 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 197
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 198 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 257
>gb|DN627717.1|DN627717 EST978533 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAO47, mRNA sequence
Length = 632
Score = 87.7 bits (44), Expect = 1e-015
Identities = 102/120 (85%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 580 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 521
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 520 ggaaacagaaccacacatccactcatgaacttt-ttgaaacccagctctgaaggacagca 462
>gb|DN631846.1|DN631846 EST982662 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACG07, mRNA sequence
Length = 797
Score = 87.7 bits (44), Expect = 1e-015
Identities = 102/120 (85%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 580 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 521
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 520 ggaaacagaaccacacatccactcatgaacttt-ttgaaacccagctctgaaggacagca 462
Score = 40.1 bits (20), Expect = 0.22
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 908 ttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaaccactcgcc 967
|||||| || ||||| || |||||| | |||| |||||||||||||| ||||| || ||
Sbjct: 761 ttgcttcgaggctgagtagatatgtttgacaagaggcattttctttatgaaccattctcc 702
Query: 968 cacccaga 975
|||||||
Sbjct: 701 aacccaga 694
>gb|DN633594.1|DN633594 EST984410 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAD902, mRNA sequence
Length = 873
Score = 87.7 bits (44), Expect = 1e-015
Identities = 102/120 (85%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 580 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 521
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 520 ggaaacagaaccacacatccactcatgaacttt-ttgaaacccagctctgaaggacagca 462
Score = 56.0 bits (28), Expect = 4e-006
Identities = 127/160 (79%)
Strand = Plus / Minus
Query: 816 ccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtc 875
||||| |||||||| || | |||||||||||||| |||||||| ||||| || || |
Sbjct: 853 ccaaaggcatattcccctacacgtggatgacgaataattgcaacctctttaaaggccctt 794
Query: 876 gtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtctt 935
|| || || ||||| ||||| |||| || | |||||| || ||||| || |||||| |
Sbjct: 793 gtgttctggtctggagaaatggcagcacttatttgcttcgaggctgagtagatatgtttg 734
Query: 936 acaaatggcattttctttataaaccactcgcccacccaga 975
|||| |||||||||||||| ||||| || || |||||||
Sbjct: 733 acaagaggcattttctttatgaaccattctccaacccaga 694
>gb|DT629937.1|DT629937 EST1154349 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME289, mRNA sequence
Length = 898
Score = 87.7 bits (44), Expect = 1e-015
Identities = 102/120 (85%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 602 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 543
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 542 ggaaacagaaccacacatccactcatgaacttt-ttgaaacccagctctgaaggacagca 484
Score = 56.0 bits (28), Expect = 4e-006
Identities = 127/160 (79%)
Strand = Plus / Minus
Query: 816 ccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtc 875
||||| |||||||| || | |||||||||||||| |||||||| ||||| || || |
Sbjct: 875 ccaaaggcatattcccctacacgtggatgacgaataattgcaacctctttaaaggccctt 816
Query: 876 gtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtctt 935
|| || || ||||| ||||| |||| || | |||||| || ||||| || |||||| |
Sbjct: 815 gtgttctggtctggagaaatggcagcacttatttgcttcgaggctgagtagatatgtttg 756
Query: 936 acaaatggcattttctttataaaccactcgcccacccaga 975
|||| |||||||||||||| ||||| || || |||||||
Sbjct: 755 acaagaggcattttctttatgaaccattctccaacccaga 716
>gb|CD022023.1|CD022023 NXNV_187_C12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_187_C12 5' similar to Arabidopsis thaliana sequence
At1g43130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 162
Score = 83.8 bits (42), Expect = 2e-014
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 1098 ccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaacaggaaaaagg 1157
|||||||||| |||||||||||||||||||| |||| || | |||||| ||||| ||
Sbjct: 155 ccatcaacaannngaataaaccaccatgtgatgtagaaagttattgcaaccggaaacaga 96
Query: 1158 actacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
|| ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 95 accacacatccactcatgaacttttttgaaacccagctctgaaggacagca 45
>gb|DN633050.1|DN633050 EST983866 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACZ10, mRNA sequence
Length = 764
Score = 83.8 bits (42), Expect = 2e-014
Identities = 100/118 (84%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 580 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 521
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacag 1206
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||
Sbjct: 520 ggaaacagaaccacacatccactcatgaacttt-ttgaaacccagctctgaaggacag 464
Score = 40.1 bits (20), Expect = 0.22
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 908 ttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaaccactcgcc 967
|||||| || ||||| || |||||| | |||| |||||||||||||| ||||| || ||
Sbjct: 761 ttgcttcgaggctgagtagatatgtttgacaagaggcattttctttatgaaccattctcc 702
Query: 968 cacccaga 975
|||||||
Sbjct: 701 aacccaga 694
>gb|DT630617.1|DT630617 EST1155029 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIMEB07, mRNA sequence
Length = 905
Score = 83.8 bits (42), Expect = 2e-014
Identities = 100/118 (84%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||||||||||||||||| |||| || | ||||||
Sbjct: 601 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaaagttattgcaacc 542
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacag 1206
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||
Sbjct: 541 ggaaacagaaccacacatccactcatgaacttt-ttgaaacccagctctgaaggacag 485
Score = 54.0 bits (27), Expect = 1e-005
Identities = 111/139 (79%)
Strand = Plus / Minus
Query: 837 cgtggatgacgaattattgcaacttctttgaaagcagtcgtattttgatctggtgaaatt 896
|||||||||||||| |||||||| ||||| || || | || || || ||||| |||||
Sbjct: 853 cgtggatgacgaataattgcaacctctttaaaggcccttgtgttctggtctggagaaatg 794
Query: 897 gcagtgctgacttgctttgatgctgaatatatatgtcttacaaatggcattttctttata 956
|||| || | |||||| || ||||| || |||||| | |||| ||||||||||||||
Sbjct: 793 gcagcacttatttgcttcgaggctgagtagatatgtttgacaagaggcattttctttatg 734
Query: 957 aaccactcgcccacccaga 975
||||| || || |||||||
Sbjct: 733 aaccattctccaacccaga 715
>gb|DR695299.1|DR695299 EST1085392 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEN33 3' end, mRNA sequence
Length = 873
Score = 79.8 bits (40), Expect = 3e-013
Identities = 101/120 (84%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| ||||||| ||||||||||||| |||| || | ||||||
Sbjct: 346 ctgaagaagccatcaacaaactgaataa-ccaccatgtgatgtagaaagttattgcaacc 288
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 287 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 228
Score = 60.0 bits (30), Expect = 2e-007
Identities = 231/298 (77%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 757 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 698
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 697 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 638
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 637 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 578
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 577 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 518
Query: 918 gctgaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccaga 975
||||| || |||||| | |||| |||||||||||||| ||||| || || |||||||
Sbjct: 517 gctgagtagatatgtttgacaagaggcattttctttatgaaccattctccaacccaga 460
>gb|DR688931.1|DR688931 EST1079017 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC30 3' end, mRNA sequence
Length = 808
Score = 73.8 bits (37), Expect = 2e-011
Identities = 100/120 (83%), Gaps = 2/120 (1%)
Strand = Plus / Minus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaacgtgactgcaaca 1148
||||| || ||||||||||| |||||||| ||||||||||| |||| || | ||||||
Sbjct: 345 ctgaagaagccatcaacaaactgaataaa--accatgtgatgtagaaagttattgcaacc 288
Query: 1149 ggaaaaaggactacacatccagtcataaactttcttgagacccaactttgaagaacagca 1208
||||| || || ||||||||| |||| |||||| |||| ||||| || ||||| ||||||
Sbjct: 287 ggaaacagaaccacacatccactcatgaacttttttgaaacccagctctgaaggacagca 228
Score = 48.1 bits (24), Expect = 9e-004
Identities = 126/160 (78%)
Strand = Plus / Minus
Query: 816 ccaaatgcatattcaccaattcgtggatgacgaattattgcaacttctttgaaagcagtc 875
||||| |||||||| || | |||||||||||||| |||||||| ||||| || || |
Sbjct: 618 ccaaaggcatattcccctacacgtggatgacgaataattgcaacctctttaaaggccctt 559
Query: 876 gtattttgatctggtgaaattgcagtgctgacttgctttgatgctgaatatatatgtctt 935
|| || || ||||| ||||| |||| || | |||||| || ||||| || |||||| |
Sbjct: 558 gtgttctggtctggagaaatggcagcacttatttgcttcgaggctgagtagatatgtttg 499
Query: 936 acaaatggcattttctttataaaccactcgcccacccaga 975
||| |||||||||||||| ||||| || || |||||||
Sbjct: 498 acaggaggcattttctttatgaaccattctccaacccaga 459
>gb|DN626792.1|DN626792 EST977608 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA802, mRNA sequence
Length = 864
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1089 ctgaaaaaaccatcaacaaattgaataaaccaccatgtgatgaagaa 1135
||||| || ||||||||||| ||||||||||||||||||||| ||||
Sbjct: 741 ctgaagaagccatcaacaaactgaataaaccaccatgtgatgtagaa 787
Score = 60.0 bits (30), Expect = 2e-007
Identities = 231/298 (77%)
Strand = Plus / Plus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 330 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 389
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 390 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 449
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 450 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 509
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 510 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 569
Query: 918 gctgaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccaga 975
||||| || |||||| | |||| |||||||||||||| ||||| || || |||||||
Sbjct: 570 gctgagtagatatgtttgacaagaggcattttctttatgaaccattctccaacccaga 627
>gb|BX250828.1|BX250828 BX250828 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041H04, mRNA sequence
Length = 574
Score = 60.0 bits (30), Expect = 2e-007
Identities = 216/278 (77%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 286 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 227
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 226 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 167
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | |||||| || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 166 agtgatgatgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 107
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 106 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 47
Query: 918 gctgaatatatatgtcttacaaatggcattttctttat 955
||||| || |||||| | |||| ||||||||||||||
Sbjct: 46 gctgagtagatatgtttgacaagaggcattttctttat 9
>gb|BX682353.2|BX682353 BX682353 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 115D08 similar to P0677H08.7 protein, mRNA
sequence
Length = 627
Score = 60.0 bits (30), Expect = 2e-007
Identities = 216/278 (77%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 300 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 241
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 240 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 181
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | |||||| || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 180 agtgatgatgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 121
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 120 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 61
Query: 918 gctgaatatatatgtcttacaaatggcattttctttat 955
||||| || |||||| | |||| ||||||||||||||
Sbjct: 60 gctgagtagatatgtttgacaagaggcattttctttat 23
>gb|DR020043.1|DR020043 STRS1_34_F06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_F06_A034 3', mRNA sequence
Length = 867
Score = 60.0 bits (30), Expect = 2e-007
Identities = 231/298 (77%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 441 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 382
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 381 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 322
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 321 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 262
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 261 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 202
Query: 918 gctgaatatatatgtcttacaaatggcattttctttataaaccactcgcccacccaga 975
||||| || |||||| | |||| |||||||||||||| ||||| || || |||||||
Sbjct: 201 gctgagtagatatgtttgacaagaggcattttctttatgaaccattctccaacccaga 144
>gb|DR070204.1|DR070204 RTDK1_12_A01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_A01_A029 3', mRNA sequence
Length = 857
Score = 56.0 bits (28), Expect = 4e-006
Identities = 220/284 (77%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 287 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 228
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 227 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 168
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 167 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 108
Query: 858 acttctttgaaagcagtcgtattttgatctggtgaaattgcagtgctgacttgctttgat 917
|| ||||| || || | || || || ||||| ||||| |||| || | |||||| ||
Sbjct: 107 acctctttaaaggcccttgtgttctggtctggagaaatggcagcacttatttgcttcgag 48
Query: 918 gctgaatatatatgtcttacaaatggcattttctttataaacca 961
||||| || |||||| | |||| |||||||||||||| |||||
Sbjct: 47 gctgagtagatatgtttgacaagaggcattttctttatgaacca 4
>gb|BQ697926.1|BQ697926 NXPV_062_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_062_E11 5' similar to Arabidopsis
thaliana sequence At2g20120 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 52.0 bits (26), Expect = 6e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 714 agaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||||||||| || ||||||||||| |||||||| ||||| ||||
Sbjct: 361 agaaatatgtccccaatgtatagatggtttgttggaacatatacac 316
>gb|CF473586.1|CF473586 RTWW2_3_D10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_D10_A021 5', mRNA sequence
Length = 734
Score = 52.0 bits (26), Expect = 6e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 714 agaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||||||||| || ||||||||||| |||||||| ||||| ||||
Sbjct: 184 agaaatatgtccccaatgtatagatggtttgttggaacatatacac 139
>gb|CO159685.1|CO159685 FLD1_15_D05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_D05_A029 3', mRNA sequence
Length = 754
Score = 52.0 bits (26), Expect = 6e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 714 agaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||||||||| || ||||||||||| |||||||| ||||| ||||
Sbjct: 424 agaaatatgtccccaatgtatagatggtttgttggaacatatacac 469
>gb|CO370563.1|CO370563 RTK1_68_E06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_E06_A029 5', mRNA sequence
Length = 774
Score = 52.0 bits (26), Expect = 6e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 714 agaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||||||||| || ||||||||||| |||||||| ||||| ||||
Sbjct: 453 agaaatatgtccccaatgtatagatggtttgttggaacatatacac 498
>gb|DR079445.1|DR079445 RTFEPL1_11_G04.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_G04_A029 3', mRNA sequence
Length = 903
Score = 52.0 bits (26), Expect = 6e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 714 agaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||||||||| || ||||||||||| |||||||| ||||| ||||
Sbjct: 434 agaaatatgtccccaatgtatagatggtttgttggaacatatacac 479
>gb|DR179313.1|DR179313 RTMNUT1_21_G02.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_G02_A029 3', mRNA sequence
Length = 698
Score = 48.1 bits (24), Expect = 9e-004
Identities = 147/188 (78%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 235 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 176
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 175 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 116
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 115 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 56
Query: 858 acttcttt 865
|| |||||
Sbjct: 55 acctcttt 48
>gb|DR386262.1|DR386262 RTHG1_14_A08.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_14_A08_A029 3', mRNA sequence
Length = 663
Score = 48.1 bits (24), Expect = 9e-004
Identities = 147/188 (78%)
Strand = Plus / Minus
Query: 678 gataaattaggtcttatgatctcctcagagttcaccagaaatatgtcaccgatgtataga 737
|||||||| |||| ||||| || | |||||| || || || |||||||| || || |||
Sbjct: 226 gataaatttggtcgaatgatatctttagagttaacaaggaaaatgtcaccaatatagaga 167
Query: 738 tgatttgttggcacatacacactacacagttcttcatcgcctttgtcagtctgaaggacc 797
||||| || || ||||| ||||| || ||||| ||||| || | ||| |||||||||
Sbjct: 166 tgattcgtgggaacatagacactgcagagttcctcatctccactctcaacctgaaggaca 107
Query: 798 acagttgatgttatgaatccaaatgcatattcaccaattcgtggatgacgaattattgca 857
| | ||| || || || ||||| |||||||| || | |||||||||||||| ||||||
Sbjct: 106 agtgatgacgtaataaaaccaaaggcatattcccctacacgtggatgacgaataattgca 47
Query: 858 acttcttt 865
|| |||||
Sbjct: 46 acctcttt 39
>gb|BX249114.1|BX249114 BX249114 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP020B10, mRNA sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.014
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 714 agaaatatgtcaccgatgtatagatgatttgttggcacatacacac 759
||||||||||| || ||||||||||| ||||| || ||||| ||||
Sbjct: 639 agaaatatgtccccaatgtatagatggtttgtaggaacatatacac 594
>gb|BI398034.1|BI398034 NXPV_113_F09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_113_F09 5' similar to Arabidopsis
thaliana sequence At2g20120 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 505
Score = 44.1 bits (22), Expect = 0.014
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 714 agaaatatgtcaccgatgtatagatgatttgttg 747
||||||||||| || ||||||||||| |||||||
Sbjct: 361 agaaatatgtccccaatgtatagatggtttgttg 328
>gb|CV034563.1|CV034563 RTNACL1_10_B08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_10_B08_A029 3', mRNA sequence
Length = 517
Score = 44.1 bits (22), Expect = 0.014
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 908 ttgctttgatgctgaatatatatgtcttacaaatggcattttctttataaacca 961
|||||| || |||||||| |||||| | |||| |||||||||||||| |||||
Sbjct: 166 ttgcttcgaggctgaataaatatgtttgacaagaggcattttctttatgaacca 113
>gb|AI812933.1|AI812933 22F2 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 169 ttcttgaaaaaataggaatc 188
>gb|BF518088.1|BF518088 NXSI_030_H01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_030_H01 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 497
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 247 ttcttgaaaaaataggaatc 266
>gb|BG526934.1|BG526934 NXPV_057_E10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_057_E10 5' similar to Arabidopsis
thaliana sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 449
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 282 ttcttgaaaaaataggaatc 301
>gb|BQ702406.1|BQ702406 NXSI_128_C09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_C09 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 247 ttcttgaaaaaataggaatc 266
>gb|CF392987.1|CF392987 RTDR3_18_G03.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_18_G03_A022 3', mRNA
sequence
Length = 489
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1009 ttccaaccagaaatatgaat 1028
||||||||||||||||||||
Sbjct: 285 ttccaaccagaaatatgaat 266
>gb|CF666818.1|CF666818 RTCNT1_26_H05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_H05_A029 3', mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1009 ttccaaccagaaatatgaat 1028
||||||||||||||||||||
Sbjct: 348 ttccaaccagaaatatgaat 329
>gb|CO201192.1|CO201192 RTCNT2_4_E06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_E06_A029 3', mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 87 ttcttgaaaaaataggaatc 106
>gb|CO201272.1|CO201272 RTCNT2_4_E06.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_E06_A029 5', mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 61 ttcttgaaaaaataggaatc 80
>gb|CX650023.1|CX650023 COLD1_43_B07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_B07_A029 3', mRNA sequence
Length = 793
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 187 ttcttgaaaaaataggaatc 206
>gb|CX650099.1|CX650099 COLD1_43_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_B07_A029 5', mRNA sequence
Length = 781
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 234 ttcttgaaaaaataggaatc 253
>gb|DR014189.1|DR014189 HEAT1_24_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A03_A029 3', mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 146 ttcttgaaaaaataggaatc 165
>gb|DR014264.1|DR014264 HEAT1_24_A03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A03_A029 5', mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 233 ttcttgaaaaaataggaatc 252
>gb|DR019950.1|DR019950 STRS1_33_D01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_D01_A034 5', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 315 ttcttgaaaaaataggaatc 334
||||||||||||||||||||
Sbjct: 385 ttcttgaaaaaataggaatc 366
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,043
Number of Sequences: 355925
Number of extensions: 156043
Number of successful extensions: 42730
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42602
Number of HSP's gapped (non-prelim): 112
length of query: 1264
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1245
effective length of database: 210,514,662
effective search space: 262090754190
effective search space used: 262090754190
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)