BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430946.2.2
(3838 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 258 2e-066
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 242 9e-062
gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus ni... 216 5e-054
gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added... 216 5e-054
gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus pota... 212 8e-053
gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 ... 196 5e-048
gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late w... 188 1e-045
gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo li... 159 1e-036
gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciat... 155 2e-035
gb|AL750979.1|AL750979 AL750979 RS Pinus pinaster cDNA clon... 151 3e-034
gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch... 151 3e-034
gb|BF778499.1|BF778499 NXSI_085_D12_F NXSI (Nsf Xylem Side ... 125 1e-026
gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch... 123 6e-026
gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Plani... 119 9e-025
gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Plani... 119 9e-025
dbj|BD236020.1| Materials and method for modification of pl... 119 9e-025
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 119 9e-025
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 119 9e-025
gb|DN609460.1|DN609460 EST962510 Subtracted pine embryo lib... 115 1e-023
gb|DT627755.1|DT627755 EST1156504 Subtracted pine embryo li... 115 1e-023
gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus ... 111 2e-022
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 109 9e-022
gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood... 101 2e-019
gb|AW985238.1|AW985238 NXNV_132_G11_F Nsf Xylem Normal wood... 100 8e-019
gb|DR089385.1|DR089385 RTAL1_8_G12.b1_A029 Roots plus added... 98 3e-018
gb|BF186257.1|BF186257 NXCI_135_B10_F NXCI (Nsf Xylem Compr... 96 1e-017
gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus mag... 92 2e-016
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 92 2e-016
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 92 2e-016
gb|CO369885.1|CO369885 RTK1_55_A04.b1_A029 Roots minus pota... 90 8e-016
gb|CX647876.1|CX647876 COLD1_25_C03.b1_A029 Root cold Pinus... 90 8e-016
gb|DR746030.1|DR746030 RTCU1_34_F01.b1_A029 Roots plus adde... 90 8e-016
gb|BX251307.1|BX251307 BX251307 Pinus pinaster differenciat... 88 3e-015
gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciat... 86 1e-014
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 82 2e-013
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 82 2e-013
gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciat... 82 2e-013
gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciat... 82 2e-013
gb|BF777175.1|BF777175 NXSI_066_C05_F NXSI (Nsf Xylem Side ... 82 2e-013
gb|BF778225.1|BF778225 NXSI_083_H07_F NXSI (Nsf Xylem Side ... 82 2e-013
gb|BM493879.1|BM493879 NXLV_071_A06_F NXLV (Nsf Xylem Late ... 82 2e-013
gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stresse... 82 2e-013
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 82 2e-013
gb|CO369344.1|CO369344 RTK1_46_B01.g1_A029 Roots minus pota... 82 2e-013
gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus adde... 82 2e-013
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 82 2e-013
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 82 2e-013
gb|BM428045.1|BM428045 NXRV_008_A09_F NXRV (Nsf Xylem Root ... 80 8e-013
gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo li... 80 8e-013
gb|DR744391.1|DR744391 RTCU1_22_E01.b1_A029 Roots plus adde... 80 8e-013
gb|BV102457.1| AY531556.SNP2 Pinus pinaster megagametophyte... 80 8e-013
gb|AY531556.1| Pinus pinaster putative cellulose synthase g... 80 8e-013
gb|BF609349.1|BF609349 NXSI_045_C06_F NXSI (Nsf Xylem Side ... 76 1e-011
gb|CD024597.1|CD024597 NXRV056_C03_F NXRV (Nsf Xylem Root w... 76 1e-011
gb|AW011234.1|AW011234 ST18D02 Pine TriplEx shoot tip libra... 74 5e-011
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 74 5e-011
gb|AW985306.1|AW985306 NXNV_135_F04_F Nsf Xylem Normal wood... 74 5e-011
gb|CF666027.1|CF666027 RTCNT1_20_E07.b1_A029 Root control P... 74 5e-011
gb|CF672816.1|CF672816 RTCNT1_74_D05.b1_A029 Root control P... 74 5e-011
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 74 5e-011
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 74 5e-011
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 74 5e-011
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 74 5e-011
gb|AW495797.1|AW495797 NXNV_065_E11_FF Nsf Xylem Normal woo... 72 2e-010
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 72 2e-010
gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciat... 72 2e-010
gb|CD027755.1|CD027755 NXNV_065_E11_F Nsf Xylem Normal wood... 72 2e-010
gb|CF476470.1|CF476470 RTWW3_1_C10.g1_A022 Well-watered lob... 72 2e-010
gb|CF668221.1|CF668221 RTCNT1_35_D11.b1_A029 Root control P... 72 2e-010
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 72 2e-010
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 72 2e-010
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 72 2e-010
dbj|BD235986.1| Materials and method for modification of pl... 72 2e-010
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 72 2e-010
gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA... 70 7e-010
gb|CD022890.1|CD022890 NXPV_089_B01_F NXPV (Nsf Xylem Plani... 70 7e-010
gb|DR101934.1|DR101934 STRR1_76_G04.g1_A033 Stem Response R... 70 7e-010
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 70 7e-010
gb|AW056552.1|AW056552 ST51E06 Pine TriplEx shoot tip libra... 66 1e-008
gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side ... 66 1e-008
gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side ... 66 1e-008
gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side ... 66 1e-008
gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side ... 66 1e-008
gb|BG832808.1|BG832808 NXPV_080_C10_F NXPV (Nsf Xylem Plani... 66 1e-008
gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root w... 66 1e-008
gb|BX682482.1|BX682482 BX682482 Pinus pinaster differenciat... 66 1e-008
gb|BX682490.1|BX682490 BX682490 Pinus pinaster differenciat... 66 1e-008
gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus ad... 66 1e-008
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 66 1e-008
gb|AW290811.1|AW290811 NXNV047B05F Nsf Xylem Normal wood Ve... 64 5e-008
gb|BG275715.1|BG275715 NXSI_145_B01_F NXSI (Nsf Xylem Side ... 64 5e-008
gb|BG275945.1|BG275945 NXSI_149_G12_F NXSI (Nsf Xylem Side ... 64 5e-008
gb|CD027470.1|CD027470 NXNV047B05 Nsf Xylem Normal wood Ver... 64 5e-008
gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control P... 64 5e-008
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 62 2e-007
gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood... 62 2e-007
gb|BE431393.1|BE431393 NXNV_181_F12_F Nsf Xylem Normal wood... 62 2e-007
gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compr... 62 2e-007
gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side ... 62 2e-007
gb|BF778216.1|BF778216 NXSI_083_G10_F NXSI (Nsf Xylem Side ... 62 2e-007
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 62 2e-007
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 62 2e-007
gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Plani... 62 2e-007
gb|BQ695964.1|BQ695964 NXPV_034_H04_F NXPV (Nsf Xylem Plani... 62 2e-007
gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Plani... 62 2e-007
gb|BQ698119.1|BQ698119 NXPV_064_G05_F NXPV (Nsf Xylem Plani... 62 2e-007
gb|BQ698366.1|BQ698366 NXPV_069_A10_F NXPV (Nsf Xylem Plani... 62 2e-007
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 62 2e-007
gb|CD023046.1|CD023046 NXPV_098_A07_F NXPV (Nsf Xylem Plani... 62 2e-007
gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine r... 62 2e-007
gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus ni... 62 2e-007
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 62 2e-007
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 62 2e-007
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 62 2e-007
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 62 2e-007
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 62 2e-007
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 62 2e-007
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 62 2e-007
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 62 2e-007
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 62 2e-007
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 62 2e-007
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 62 2e-007
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 62 2e-007
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 62 2e-007
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 62 2e-007
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 62 2e-007
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 62 2e-007
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 62 2e-007
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 62 2e-007
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 62 2e-007
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 62 2e-007
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 62 2e-007
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 62 2e-007
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 62 2e-007
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 62 2e-007
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 62 2e-007
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 62 2e-007
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 62 2e-007
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 62 2e-007
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 62 2e-007
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 62 2e-007
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 62 2e-007
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 62 2e-007
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 62 2e-007
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 62 2e-007
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 62 2e-007
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 62 2e-007
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 62 2e-007
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 62 2e-007
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 62 2e-007
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 62 2e-007
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 62 2e-007
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 62 2e-007
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 62 2e-007
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 62 2e-007
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 62 2e-007
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 62 2e-007
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 62 2e-007
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 62 2e-007
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 62 2e-007
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 62 2e-007
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 62 2e-007
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 62 2e-007
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 62 2e-007
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 62 2e-007
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 62 2e-007
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 62 2e-007
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 62 2e-007
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 62 2e-007
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 62 2e-007
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 62 2e-007
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 62 2e-007
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 62 2e-007
gb|AW010875.1|AW010875 ST12E01 Pine TriplEx shoot tip libra... 60 7e-007
gb|BF517850.1|BF517850 NXSI_029_A11_F NXSI (Nsf Xylem Side ... 60 7e-007
gb|BF610064.1|BF610064 NXSI_054_C11_F NXSI (Nsf Xylem Side ... 60 7e-007
dbj|BD236021.1| Materials and method for modification of pl... 60 7e-007
gb|AA556746.1|AA556746 588 Loblolly pine NA Pinus taeda cDN... 58 3e-006
gb|BE187012.1|BE187012 NXNV_157_H10_F Nsf Xylem Normal wood... 58 3e-006
gb|BE657157.1|BE657157 NXCI_064_G04_F NXCI (Nsf Xylem Compr... 58 3e-006
gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compr... 58 3e-006
gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered lo... 58 3e-006
gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control P... 58 3e-006
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 58 3e-006
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 58 3e-006
gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulf... 58 3e-006
dbj|BD235989.1| Materials and method for modification of pl... 58 3e-006
gb|BF777661.1|BF777661 NXSI_073_C10_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Ve... 54 4e-005
gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clon... 54 4e-005
gb|BF517368.1|BF517368 NXSI_013_F11_F NXSI (Nsf Xylem Side ... 54 4e-005
gb|CD020015.1|CD020015 NXNV017A03 Nsf Xylem Normal wood Ver... 54 4e-005
gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root ... 54 4e-005
gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Ver... 54 4e-005
gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered lo... 54 4e-005
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 54 4e-005
gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response R... 54 4e-005
gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response R... 54 4e-005
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 54 4e-005
gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose s... 54 4e-005
gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pin... 54 4e-005
gb|BX255611.1|BX255611 BX255611 Pinus pinaster differenciat... 52 2e-004
gb|BE643725.1|BE643725 NXCI_043_H03_F NXCI (Nsf Xylem Compr... 52 2e-004
gb|CD020879.1|CD020879 NXNV_092_D05_F Nsf Xylem Normal wood... 52 2e-004
gb|CD022200.1|CD022200 NXPV_024_F02_F NXPV (Nsf Xylem Plani... 52 2e-004
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 52 2e-004
gb|CX651410.1|CX651410 COLD1_52_E07.b1_A029 Root cold Pinus... 52 2e-004
gb|DR169086.1|DR169086 RTPHOS1_30_A02.b1_A029 Roots minus p... 52 2e-004
gb|BF778814.1|BF778814 NXSI_087_D09_F NXSI (Nsf Xylem Side ... 50 7e-004
gb|BM492221.1|BM492221 NXRV_022_D06_F NXRV (Nsf Xylem Root ... 50 7e-004
gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root w... 50 7e-004
gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root w... 50 7e-004
gb|BQ700740.1|BQ700740 NXRV110_F08_F NXRV (Nsf Xylem Root w... 50 7e-004
gb|DR059226.1|DR059226 RTNIT1_16_B01.g1_A029 Roots minus ni... 50 7e-004
gb|DR695127.1|DR695127 EST1085220 Normalized pine embryo li... 50 7e-004
gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip libra... 48 0.003
gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side ... 48 0.003
gb|BQ696934.1|BQ696934 NXPV_047_A09_F NXPV (Nsf Xylem Plani... 48 0.003
gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Plani... 48 0.003
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 48 0.003
gb|CD019985.1|CD019985 NXNV008B03 Nsf Xylem Normal wood Ver... 48 0.003
gb|CD021726.1|CD021726 NXNV_159_F12_F Nsf Xylem Normal wood... 48 0.003
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 48 0.003
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 48 0.003
gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo li... 48 0.003
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 48 0.003
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 48 0.003
gb|AW698302.1|AW698302 NXNV_071_E11_F Nsf Xylem Normal wood... 46 0.011
gb|AW784057.1|AW784057 NXNV_117_B10_F Nsf Xylem Normal wood... 46 0.011
gb|AW870284.1|AW870284 NXNV_128_H04_F Nsf Xylem Normal wood... 46 0.011
gb|BE123803.1|BE123803 NXNV_156_F02_F Nsf Xylem Normal wood... 46 0.011
gb|BQ702327.1|BQ702327 NXSI_127_D10_F NXSI (Nsf Xylem Side ... 46 0.011
gb|AY764673.1|AY764673S1 Pinus taeda isolate 11 cellulose s... 46 0.011
gb|AY764675.1|AY764675S1 Pinus taeda isolate 16 cellulose s... 46 0.011
gb|AY764677.1|AY764677S1 Pinus taeda isolate 25 cellulose s... 46 0.011
gb|AY764679.1|AY764679S1 Pinus taeda isolate 7 cellulose sy... 46 0.011
gb|AY764681.1|AY764681S1 Pinus taeda isolate 6 cellulose sy... 46 0.011
gb|AY764683.1|AY764683S1 Pinus taeda isolate 4 cellulose sy... 46 0.011
gb|AY764685.1|AY764685S1 Pinus taeda isolate 26 cellulose s... 46 0.011
gb|AY764687.1|AY764687S1 Pinus taeda isolate 9 cellulose sy... 46 0.011
gb|AY764689.1|AY764689S1 Pinus taeda isolate 23 cellulose s... 46 0.011
gb|AY764691.1|AY764691S1 Pinus taeda isolate 13 cellulose s... 46 0.011
gb|AY764693.1|AY764693S1 Pinus taeda isolate 30 cellulose s... 46 0.011
gb|AY764695.1|AY764695S1 Pinus taeda isolate 22 cellulose s... 46 0.011
gb|AY764697.1|AY764697S1 Pinus taeda isolate 32 cellulose s... 46 0.011
gb|AY764699.1|AY764699S1 Pinus taeda isolate 18 cellulose s... 46 0.011
gb|AY764701.1|AY764701S1 Pinus taeda isolate 10 cellulose s... 46 0.011
gb|AY764703.1|AY764703S1 Pinus taeda isolate 14 cellulose s... 46 0.011
gb|AY764705.1|AY764705S1 Pinus taeda isolate 21 cellulose s... 46 0.011
gb|AY764707.1|AY764707S1 Pinus taeda isolate 31 cellulose s... 46 0.011
gb|AY764709.1|AY764709S1 Pinus taeda isolate 5 cellulose sy... 46 0.011
gb|AY764711.1|AY764711S1 Pinus taeda isolate 2 cellulose sy... 46 0.011
gb|AY764713.1|AY764713S1 Pinus taeda isolate 3 cellulose sy... 46 0.011
gb|AY764715.1|AY764715S1 Pinus taeda isolate 19 cellulose s... 46 0.011
gb|AY764717.1|AY764717S1 Pinus taeda isolate 28 cellulose s... 46 0.011
gb|AY764719.1|AY764719S1 Pinus taeda isolate 17 cellulose s... 46 0.011
gb|AY764721.1|AY764721S1 Pinus taeda isolate 8 cellulose sy... 46 0.011
gb|AY764723.1|AY764723S1 Pinus taeda isolate 15 cellulose s... 46 0.011
gb|AY764725.1|AY764725S1 Pinus taeda isolate 1 cellulose sy... 46 0.011
gb|AY764727.1|AY764727S1 Pinus taeda isolate 29 cellulose s... 46 0.011
gb|AY764729.1|AY764729S1 Pinus taeda isolate 20 cellulose s... 46 0.011
gb|AY764731.1|AY764731S1 Pinus taeda isolate 27 cellulose s... 46 0.011
gb|AY764733.1|AY764733S1 Pinus taeda isolate 12 cellulose s... 46 0.011
gb|AY764735.1|AY764735S1 Pinus taeda isolate 24 cellulose s... 46 0.011
gb|BV079717.1| Pp_CesA7 Pinus pinaster megagametophytes Pin... 46 0.011
gb|BF609760.1|BF609760 NXSI_050_B03_F NXSI (Nsf Xylem Side ... 44 0.042
gb|BQ701215.1|BQ701215 NXSI_023_H05_F NXSI (Nsf Xylem Side ... 44 0.042
gb|DR100267.1|DR100267 STRR1_62_H11.g1_A033 Stem Response R... 44 0.042
gb|DR160218.1|DR160218 RTFE1_4_D09.g1_A029 Roots minus iron... 44 0.042
gb|DT638876.1|DT638876 EST1153807 Normalized pine embryo li... 44 0.042
gb|BE457983.1|BE457983 NXCI_008_H12_F NXCI (Nsf Xylem Compr... 42 0.17
gb|CD016846.1|CD016846 NXCI_064_H04_F NXCI (Nsf Xylem Compr... 42 0.17
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 258 bits (130), Expect = 2e-066
Identities = 754/962 (78%)
Strand = Plus / Minus
Query: 1771 cctgttcccacgtaaactggaccctgaatgccatccagacctttcatgttgatatcaaag 1830
||||| ||||| ||||| || ||||| || ||||||| ||| |||| |||||||||||
Sbjct: 2606 cctgtgcccacataaacaggcccctgtatcccatccaaacccttcaaattgatatcaaaa 2547
Query: 1831 aaaactatgttccgattagcatatcgatcgtgcaagtcaatgccatcaaatctctgtgga 1890
|| ||| | || |||||||||||||||| | ||||||||||||||| || || ||
Sbjct: 2546 aagactgtattgtgattagcatatcgatcatttctgtcaatgccatcaaacctttgaggg 2487
Query: 1891 aattgtacataacaagttttccttcctagagccggatccatcatgaagcacattgcttct 1950
|| || |||||||| |||| | || |||| ||||||||||| || ||||| || ||
Sbjct: 2486 aactgaacataacagactttcttcccaagagtaggatccatcataaaacacatggcctca 2427
Query: 1951 ctaagagctttgctgctattgaagtaatggtcgcaatccacattgagaagataggcacca 2010
| ||| || ||||| | || | |||||||| ||||| | |||||| | ||| | |||
Sbjct: 2426 cgaagggccctgctgttgtttatataatggtcacaatcaagattgagcatataagggcca 2367
Query: 2011 tttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtgatgc 2070
|| || || || || || ||||||| || | ||||||||||||||| || ||||| ||
Sbjct: 2366 ttggtaagaactgcggaaacacgaaccaatgaattcattgcaccagcttttttgtggtgt 2307
Query: 2071 tgaaagcctggtctcttttcacgagagacatagacaagacgtggtaactcatttccatca 2130
| ||| || ||||||||||||||||| ||||| ||||| || |||| ||||| |||||
Sbjct: 2306 tcaaaaccaggtctcttttcacgagaaacatatacaagtcgaggtagttcattgccatcg 2247
Query: 2131 gtgtcgagcccaccactgtgccccaagaaaacctgaatcatgccaggatggtccctagga 2190
||||| ||||||||||| || || ||||| ||||| ||||| ||||||||||||| | |
Sbjct: 2246 gtgtcaagcccaccactatgacctaagaacacctgtatcatcccaggatggtcccgggta 2187
Query: 2191 ttattcccaggccatgcagttccatcagccatggtccacccctcttcaggcactttctgt 2250
||||| |||||||| | |||||||| ||| |||| || |||||||| || |||||
Sbjct: 2186 ttatttccaggccaaggtgttccatcttgcataatccagccttcttcaggaaccttctga 2127
Query: 2251 gctttggcaacaagggcattgattcttactttgaattcttcatactccctcttcattgcg 2310
||||| |||||||| |||||||||| || ||||| |||||||| || |||||||||||
Sbjct: 2126 gctttagcaacaagagcattgattcggaccttgaactcttcatattctctcttcattgct 2067
Query: 2311 cgtctttccttaacaaatgaaggttgaattttgtccttcaggtaatctattttttgagca 2370
| | ||| || ||||| |||||||| | ||| |||||||| || ||||| |||||||||
Sbjct: 2066 ctacgttcttttacaaaagaaggttgcactttatccttcagatagtctatcttttgagca 2007
Query: 2371 aagtaaaattctggagctcttggttcaatattgtgcttcttacaaaagggaacccacttt 2430
|| || | |||||||| || |||||||||| || ||| ||| || ||||| ||
Sbjct: 2006 aaataccactctggagccctgggttcaatatcaaattttttaacaaatggcacccatttc 1947
Query: 2431 ctagcaaattctgcggtttctgagagagactcaaaagtcagcatagctgaaccatcatca 2490
|| |||||||||| |||||| || || | ||||| || ||||| || | ||||| |||
Sbjct: 1946 cttgcaaattctgaggtttcagaaagggcttcaaatgttagcattgcagctccatcgtca 1887
Query: 2491 gaaacatagcatgacactttgtcaacagggtaatccacagaaagaatggacaaaacagtg 2550
|| ||||| ||||| ||||| ||||| || || |||||||||||||| |||||||||||
Sbjct: 1886 gacacataacatgaaactttatcaactggatagtccacagaaagaattgacaaaacagta 1827
Query: 2551 ttggctgtgatcagtggaggttccttcaatggatccactgtactgacgaagacatcaatg 2610
|| || || | || ||||| ||||||| ||||| ||||| ||||| || | |||||
Sbjct: 1826 tttgccgtcacaagaggaggctccttcataggatcaactgtgctgacaaaaatatcaaca 1767
Query: 2611 ggagccagctgtgatggctctccctctctatcatacctcaatgcaagcctgtcaagatat 2670
| ||||| ||| ||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 1766 gcagccaactgagatggctctccttctctatcgtatctcaaacaaagcctgtcaagataa 1707
Query: 2671 gtctcacggttgattggataccattttgggaactgatctagaagccaagacaaggcaaac 2730
|| || | ||||| ||| |||||| || |||||||| |||| ||| || | |||||||
Sbjct: 1706 gtttccctattgatgggaagccatttaggaaactgatcaagaatccaggatatggcaaac 1647
Query: 2731 ca 2732
||
Sbjct: 1646 ca 1645
Score = 153 bits (77), Expect = 6e-035
Identities = 227/277 (81%)
Strand = Plus / Minus
Query: 1153 taaccataccagataggacaatgtctactaagcagaatttccactgacccaagagcccaa 1212
||||||||||| || |||||||| || ||||| ||||||||||| || || | ||||||
Sbjct: 3218 taaccataccaaattggacaatgcctgctaagaagaatttccacagagcccaaagcccat 3159
Query: 1213 cggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaaacaaggt 1272
|| || || || || |||||||| |||||||| ||||| ||||| |||||||| |||
Sbjct: 3158 cgcagaacttggttcagacgatcagaaagattaattggagcagatcccttgaatgcaggg 3099
Query: 1273 cgtggtggcatgcagtagattgattgccagccccttgcatgcattttaaacccagtcaga 1332
|| || ||||| ||||| |||||| |||| || | |||||||||||||| ||||||| |
Sbjct: 3098 cgaggaggcatacagtatattgatcgccaaccacgagcatgcattttaaagccagtcaaa 3039
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttccccattcagttttgtcc 1392
||||| || || || |||||||| ||||| ||||||||||||||||| || | |||||
Sbjct: 3038 atatcttctgtcacagaaccatatatccaaccaatctcttttccccaatctgacttgtct 2979
Query: 1393 tcatatccacaactgatgacatggatagcttccttta 1429
||||| ||||| ||||| |||||||| ||||| ||||
Sbjct: 2978 tcataaccacagctgattacatggattgcttctttta 2942
Score = 69.9 bits (35), Expect = 7e-010
Identities = 113/139 (81%)
Strand = Plus / Minus
Query: 3352 tcaccatgaactcgagggctacctttctgtctcttgtatctagtcttgcactgggggcag 3411
||||||| ||| ||||||||||||| || | |||||||||||||||||| || || ||
Sbjct: 947 tcaccatccacttgagggctacctttatgccacttgtatctagtcttgcattgtggacaa 888
Query: 3412 cattggttcccctccttgcgctcatactcatagcatgggcggcagacagggaaggcacac 3471
|||| || || ||||| | |||||| |||||||| || | ||| || || || ||||||
Sbjct: 887 gattgatttccatccttccactcatattcatagcaaggcctgcatactggaaatgcacac 828
Query: 3472 tcattgcaggcaacaaaga 3490
|||||||| || |||||||
Sbjct: 827 tcattgcaagctacaaaga 809
Score = 67.9 bits (34), Expect = 3e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccatc 943
||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||
Sbjct: 3485 ccaatcacccagaactgctcattcctccaccattcatcaatgccaaccccgctccatc 3428
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 2981 tagtcacttgcatcatatttttgtcctgtttaaccctccagctctcaactctttccttcc 3040
|||||||||||| ||||||||||||||||| | ||||||| || ||||| |||||||
Sbjct: 1387 tagtcacttgcaatgtatttttgtcctgtttattcttccagctttctactctctccttcc 1328
Query: 3041 agtcaaca 3048
|| |||||
Sbjct: 1327 aggcaaca 1320
Score = 46.1 bits (23), Expect = 0.011
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 511 gagaagatagatgcaagaaggatggaccagacaatgacgattgttggtgtgcggttctg 569
||||| |||||||| ||||| || ||||| ||||| || || ||||| |||||||||||
Sbjct: 3860 gagaaaatagatgccagaagaattgaccaaacaataacaatagttggagtgcggttctg 3802
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 242 bits (122), Expect = 9e-062
Identities = 503/630 (79%)
Strand = Plus / Minus
Query: 2043 attcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacata 2102
|||||| ||||| || |||||||| || || ||||| || |||||||||||||| |||||
Sbjct: 1581 attcatagcaccggctttcttgtggtgttggaagccaggcctcttttcacgagacacata 1522
Query: 2103 gacaagacgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaagaaaac 2162
||| |||||||||| ||||| || ||||| || | ||| |||||||| || || || ||
Sbjct: 1521 gactagacgtggtagttcattgccttcagtatccatccctccactgtgtcctaaaaacac 1462
Query: 2163 ctgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatcagccat 2222
||| ||||| |||||||||||||| | |||||| |||||||| | ||| ||||| |||
Sbjct: 1461 ctgtatcatcccaggatggtccctggtattatttccaggccagggagtgccatcttgcat 1402
Query: 2223 ggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttacttt 2282
||| ||||||||||| || ||||| || || |||||||| |||||||| | || ||
Sbjct: 1401 aacccagccctcttcaggtaccttctgggccttcgcaacaagcgcattgatccgaacctt 1342
Query: 2283 gaattcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttgaatttt 2342
|||||||||||| || ||||||||||| | | || || ||||| | ||| || | |||
Sbjct: 1341 gaattcttcatattctctcttcattgccctccgctcttttacaaaagtaggctgtacttt 1282
Query: 2343 gtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatatt 2402
|||||||| |||||| ||||| | | ||||| | ||||||||||| |||||||| ||
Sbjct: 1281 gtccttcaagtaatccattttcagtgagaagtaccactctggagctctgggttcaatgtt 1222
Query: 2403 gtgcttcttacaaaagggaacccactttctagcaaattctgcggtttctgagagagactc 2462
||| || ||||| || ||||| || || |||||||||| |||||||| || || ||
Sbjct: 1221 aaactttttgcaaaatggcacccatttccttgcaaattctgaagtttctgaaagggattc 1162
Query: 2463 aaaagtcagcatagctgaaccatcatcagaaacatagcatgacactttgtcaacagggta 2522
||||||| ||| |||| ||||| |||||||||||||| || || ||||||||||| ||
Sbjct: 1161 gaaagtcaacatggctgctccatcgtcagaaacatagcaggaaaccttgtcaacaggata 1102
Query: 2523 atccacagaaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaatgg 2582
||||||||| ||||| |||| ||||||||| || || | || ||||| ||||| || ||
Sbjct: 1101 atccacagacagaatcgacagaacagtgtttgcagtaacaagaggaggctcctttaaagg 1042
Query: 2583 atccactgtactgacgaagacatcaatgggagccagctgtgatggctctccctctctatc 2642
|| ||||||||||| || | ||||| | ||||| ||||||||| || || |||| ||
Sbjct: 1041 gtcaactgtactgacaaaaatgtcaatagcagccaactgtgatggttcaccttctcggtc 982
Query: 2643 atacctcaatgcaagcctgtcaagatatgt 2672
||| ||||| |||||||||||||| |||||
Sbjct: 981 atatctcaaagcaagcctgtcaaggtatgt 952
Score = 95.6 bits (48), Expect = 1e-017
Identities = 162/200 (81%)
Strand = Plus / Minus
Query: 1230 acgatcggaaagattgattggtgcagaacccttgaaacaaggtcgtggtggcatgcagta 1289
|||||| |||||||| || || ||||| || ||||| ||| || || |||||||||||
Sbjct: 2403 acgatcagaaagatttataggagcagaccctttgaatgcagggcgaggaggcatgcagta 2344
Query: 1290 gattgattgccagccccttgcatgcattttaaacccagtcagaatatcctccgttactga 1349
|| ||| |||||| | |||||||||||||| ||||| | |||||| ||||| |||||
Sbjct: 2343 aatggatctccagccacgagcatgcattttaaatccagttaaaatatcttccgtcactga 2284
Query: 1350 accatagatccagccaatctcttttccccattcagttttgtcctcatatccacaactgat 1409
|||||| ||||| |||||||| |||||| || || ||||| ||||| ||||| || ||
Sbjct: 2283 accataaatccaaccaatctcacgtccccagtctgtcttgtcttcatacccacagctaat 2224
Query: 1410 gacatggatagcttccttta 1429
|||||||||||||| ||||
Sbjct: 2223 aacatggatagcttctttta 2204
Score = 67.9 bits (34), Expect = 3e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 1756 ctattgaaacagcatcctgttcccacgtaaactggaccctgaatgccatccagacctttc 1815
||||||||||| |||||||| ||||| |||||||| ||||| || ||||||| ||||||
Sbjct: 1868 ctattgaaacaacatcctgtacccacataaactgggccctggattccatccaaacctttg 1809
Query: 1816 atgttgatatcaaa 1829
| |||||||||||
Sbjct: 1808 agattgatatcaaa 1795
Score = 58.0 bits (29), Expect = 3e-006
Identities = 98/121 (80%)
Strand = Plus / Minus
Query: 3370 ctacctttctgtctcttgtatctagtcttgcactgggggcagcattggttcccctccttg 3429
|||||||| || ||||||||||||||||||| || || ||| |||| || || || ||
Sbjct: 176 ctacctttatgcatcttgtatctagtcttgcattgaggacaggattgatttccatctttc 117
Query: 3430 cgctcatactcatagcatgggcggcagacagggaaggcacactcattgcaggcaacaaag 3489
||||| || |||||||| || | ||| ||||| |||||||| ||||||| || ||||||
Sbjct: 116 cgctcgtaatcatagcaaggtctgcacacaggaaaggcacagacattgcacgctacaaag 57
Query: 3490 a 3490
|
Sbjct: 56 a 56
Score = 46.1 bits (23), Expect = 0.011
Identities = 95/119 (79%)
Strand = Plus / Minus
Query: 499 acccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttggt 558
||||| ||||| ||||||||||| || ||||| | |||||||||| || ||||| |||
Sbjct: 3134 acccagagcaaagagaagatagacgcgagaagaacagaccagacaacaacaattgtgggt 3075
Query: 559 gtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccca 617
|| | ||| || | |||||| | ||| || ||||| ||||| ||||||| ||||||||
Sbjct: 3074 gtcctgttttgtcgtcccatcaaacctttcaggaaagggtaaagatggacaatcaccca 3016
>gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_17_D03_A029 5', mRNA sequence
Length = 862
Score = 216 bits (109), Expect = 5e-054
Identities = 466/585 (79%)
Strand = Plus / Minus
Query: 2043 attcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacata 2102
|||||| ||||| || |||||||| || || ||||| || |||||||||||||| |||||
Sbjct: 647 attcatagcaccggctttcttgtggtgttggaagccaggcctcttttcacgagacacata 588
Query: 2103 gacaagacgtggtaactcatttccatcagtgtcgagcccaccactgtgccccaagaaaac 2162
||| |||||||||| ||||| || ||||| || | ||| |||||||| || || || ||
Sbjct: 587 gactagacgtggtagttcattgccttcagtatccatccctccactgtgtcctaaaaacac 528
Query: 2163 ctgaatcatgccaggatggtccctaggattattcccaggccatgcagttccatcagccat 2222
||| ||||| |||||||||||||| | |||||| |||||||| ||| ||||| |||
Sbjct: 527 ctgtatcatcccaggatggtccctggtattatttccaggccagagagtgccatcttgcat 468
Query: 2223 ggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttacttt 2282
||| ||||||||||| || ||||| || || |||||||| |||||||| | || ||
Sbjct: 467 aacccagccctcttcaggtaccttctgggccttcgcaacaagcgcattgatccgaacctt 408
Query: 2283 gaattcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggttgaatttt 2342
|||||||||||| || ||||||||||| | | || || ||||| | ||| || | |||
Sbjct: 407 gaattcttcatattctctcttcattgccctccgctcttttacaaaagtaggctgtacttt 348
Query: 2343 gtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatatt 2402
|||||||| |||||| ||||| | | |||||| | ||||||||||| |||||||| ||
Sbjct: 347 gtccttcaagtaatccattttcagtgaaaagtaccactctggagctctgggttcaatgtt 288
Query: 2403 gtgcttcttacaaaagggaacccactttctagcaaattctgcggtttctgagagagactc 2462
||| || ||||| || ||||| || || |||||||||| |||||||| || || ||
Sbjct: 287 aaactttttgcaaaatggcacccatttccttgcaaattctgaagtttctgaaagggattc 228
Query: 2463 aaaagtcagcatagctgaaccatcatcagaaacatagcatgacactttgtcaacagggta 2522
||||||| ||| |||| ||||| |||||||||||||| || || ||||||||||| ||
Sbjct: 227 gaaagtcaacatggctgctccatcgtcagaaacatagcaggaaaccttgtcaacaggata 168
Query: 2523 atccacagaaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaatgg 2582
||||||||| ||||| |||| ||||||||| || || | || ||||| ||||| || ||
Sbjct: 167 atccacagacagaatcgacagaacagtgtttgcagtaacaagaggaggctcctttaaagg 108
Query: 2583 atccactgtactgacgaagacatcaatgggagccagctgtgatgg 2627
|| ||||||||||| || | ||||| | ||||| |||||||||
Sbjct: 107 gtcaactgtactgacaaaaatgtcaatagcagccaactgtgatgg 63
>gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_D04_A029 3', mRNA sequence
Length = 749
Score = 216 bits (109), Expect = 5e-054
Identities = 465/584 (79%)
Strand = Plus / Plus
Query: 2155 aagaaaacctgaatcatgccaggatggtccctaggattattcccaggccatgcagttcca 2214
||||| ||||| ||||| || |||||||| | || || || || ||||||| |||||||
Sbjct: 7 aagaatacctggatcatccccggatggtctcgagtgttgttgcctggccatggagttcca 66
Query: 2215 tcagccatggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgatt 2274
|| ||||||||| |||||||| |||||||| || |||||||| ||||| ||||| ||
Sbjct: 67 tcttgcatggtccatccctcttctggcactttntgcgctttggccacaagagcattaatc 126
Query: 2275 cttactttgaattcttcatactccctcttcattgcgcgtctttccttaacaaatgaaggt 2334
| | ||| | |||||||| |||||||||||||| | | ||| |||||||| |||||
Sbjct: 127 cggatcttgtactcttcatattccctcttcattgctctccgttctttaacaaaggaaggc 186
Query: 2335 tgaattttgtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggt 2394
|| | ||| ||||||| ||||| || || || |||||||| ||||||||||| || ||
Sbjct: 187 tgtactttatccttcaaataatcaatcttctgggcaaagtagaattctggagccctgggc 246
Query: 2395 tcaatattgtgcttcttacaaaagggaacccactttctagcaaattctgcggtttctgag 2454
|| ||| ||| || || ||||| || |||||||| || || ||||||| ||||||||
Sbjct: 247 tcgatactgtattttttgcaaaatggcacccacttccttgcgaattctgaagtttctgaa 306
Query: 2455 agagactcaaaagtcagcatagctgaaccatcatcagaaacatagcatgacactttgtca 2514
|| | |||||||||| ||| || | ||||||||||||||||||||||| ||||| ||
Sbjct: 307 agggtttcaaaagtcaacattgccgctccatcatcagaaacatagcatgaaactttatcg 366
Query: 2515 acagggtaatccacagaaagaatggacaaaacagtgttggctgtgatcagtggaggttcc 2574
||||| |||||||| | ||| || |||| |||||| || ||||||| || ||||| |||
Sbjct: 367 acaggataatccacggcaaggatagacagaacagtatttgctgtgacaagaggaggctcc 426
Query: 2575 ttcaatggatccactgtactgacgaagacatcaatgggagccagctgtgatggctctccc 2634
|| | ||||||||||||||||| || | ||||| |||| ||| |||||||||||
Sbjct: 427 tttagaggatccactgtactgacaaaaatatcaacaccggccaactgagatggctctcct 486
Query: 2635 tctctatcatacctcaatgcaagcctgtcaagatatgtctcacggttgattggataccat 2694
||||| ||| ||||||| | |||||||||||||||||| || ||||| || || ||||
Sbjct: 487 tctctgtcaaacctcaaagaaagcctgtcaagatatgtttctcggttaatgggcatccat 546
Query: 2695 tttgggaactgatctagaagccaagacaaggcaaaccagacctc 2738
|| || ||||| || |||| ||| |||| |||||||||||||||
Sbjct: 547 ttaggaaactggtcaagaatccatgacacggcaaaccagacctc 590
>gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_55_A04_A029 5', mRNA sequence
Length = 695
Score = 212 bits (107), Expect = 8e-053
Identities = 281/339 (82%)
Strand = Plus / Minus
Query: 1086 ggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatcg 1145
|||||||| ||||| || || || |||||||| |||||||||| ||| | |||||||
Sbjct: 417 ggatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatct 358
Query: 1146 tccattgtaaccataccagataggacaatgtctactaagcagaatttccactgacccaag 1205
|||| |||| |||||||| || |||||||| || || || |||||||| || || |||||
Sbjct: 357 tccagtgtagccataccaaattggacaatgcctgctcagtagaatttcaacagaaccaag 298
Query: 1206 agcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
||||| |||||||| ||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct: 297 ggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaa 238
Query: 1266 acaaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcattttaaaccc 1325
||| |||| ||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct: 237 tgcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccc 178
Query: 1326 agtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattcagt 1385
||||| |||||| || || || |||||||| ||||| |||||||||||||||||||| |
Sbjct: 177 agtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccccattctga 118
Query: 1386 tttgtcctcatatccacaactgatgacatggatagcttc 1424
||||| ||||||||||| ||||| ||||| || |||||
Sbjct: 117 cttgtcttcatatccacagctgataacatgaatggcttc 79
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaac 932
|||||||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 617 ccaataacccaaaattgctcattcctccaccattcatcaatgccaac 571
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1009 ttgctaatctcaggaatgataaa 1031
|||||||||||||||||||||||
Sbjct: 494 ttgctaatctcaggaatgataaa 472
>gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_A01_A029 3', mRNA sequence
Length = 681
Score = 196 bits (99), Expect = 5e-048
Identities = 240/287 (83%)
Strand = Plus / Plus
Query: 1138 ttcaatcgtccattgtaaccataccagataggacaatgtctactaagcagaatttccact 1197
||||||| |||| |||| |||||||| || |||||||| || || || |||||||| ||
Sbjct: 8 ttcaatcttccagtgtagccataccaaattggacaatgcctgctcagtagaatttcaaca 67
Query: 1198 gacccaagagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaa 1257
|| ||||| ||||| |||||||| ||||| | |||||| ||||||||||||||||||||
Sbjct: 68 gaaccaagggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagat 127
Query: 1258 cccttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcatt 1317
|||||||| ||| |||| ||||||||||| ||||| |||||| | |||||||||
Sbjct: 128 cccttgaatgcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcatt 187
Query: 1318 ttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccc 1377
||||||||||||| |||||| || || || |||||||| ||||| |||||||||||||||
Sbjct: 188 ttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccc 247
Query: 1378 cattcagttttgtcctcatatccacaactgatgacatggatagcttc 1424
||||| | ||||| ||||||||||| ||||| ||||| || |||||
Sbjct: 248 cattctgacttgtcttcatatccacagctgataacatgaatggcttc 294
>gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV105_E07 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 758
Score = 188 bits (95), Expect = 1e-045
Identities = 278/339 (82%)
Strand = Plus / Minus
Query: 1086 ggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatcg 1145
|||||||| ||||| || || || |||||||| |||||||||| ||| | |||||||
Sbjct: 465 ggatgtgaggggataaactatggtattgatgtacgccagcctctgcaatggtttcaatct 406
Query: 1146 tccattgtaaccataccagataggacaatgtctactaagcagaatttccactgacccaag 1205
|||| |||| |||||||| || |||||||| || || || | |||||| || || |||||
Sbjct: 405 tccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaag 346
Query: 1206 agcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
||||| || | ||| ||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct: 345 ggcccatcgaaacacttgattcaaacgatctgaaagattgattggtgcagatcccttgaa 286
Query: 1266 acaaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcattttaaaccc 1325
||| |||| ||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct: 285 tgcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccc 226
Query: 1326 agtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattcagt 1385
||||| |||||| || || || |||||||| ||||| |||||||||||||||||||| |
Sbjct: 225 agtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccccattctga 166
Query: 1386 tttgtcctcatatccacaactgatgacatggatagcttc 1424
||||| ||||||||||| ||||| ||||| || |||||
Sbjct: 165 cttgtcttcatatccacagctgataacatgaatggcttc 127
Score = 50.1 bits (25), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgcc 929
|||||||||||||| | |||||| |||||||| || ||||||||
Sbjct: 665 ccaataacccaaaattnctcattcctccaccattcatcaatgcc 622
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1009 ttgctaatctcaggaatgataaa 1031
|||||||||||||||||||||||
Sbjct: 542 ttgctaatctcaggaatgataaa 520
>gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC32 3' end, mRNA sequence
Length = 737
Score = 159 bits (80), Expect = 1e-036
Identities = 188/224 (83%)
Strand = Plus / Minus
Query: 1201 ccaagagcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaaccc 1260
||||| ||||| |||||||| ||||| | |||||| |||||||||||||||||||| |||
Sbjct: 728 ccaagggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatccc 669
Query: 1261 ttgaaacaaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcatttta 1320
||||| ||| |||| || |||||||| ||||| |||||| | ||||||||||||
Sbjct: 668 ttgaatgcaggacgtgcaggtatgcagtatattgaaatccagcctcgagcatgcatttta 609
Query: 1321 aacccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccat 1380
|||||||||| |||||| || || || |||||||| ||||| ||||||||||||||||||
Sbjct: 608 aacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccccat 549
Query: 1381 tcagttttgtcctcatatccacaactgatgacatggatagcttc 1424
|| | ||||| ||||||||||| ||||| ||||| || |||||
Sbjct: 548 tctgacttgtcttcatatccacagctgataacatgaatggcttc 505
Score = 103 bits (52), Expect = 5e-020
Identities = 151/184 (82%)
Strand = Plus / Minus
Query: 1728 aacaggatcgtatccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaac 1787
||||||||| || ||||| | || |||||||| || || || ||||| ||||| |||||
Sbjct: 195 aacaggatcataaccatagagtgcttgtctattaaagcaacaacctgtacccacataaac 136
Query: 1788 tggaccctgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgatt 1847
|| || || || ||||| | |||| ||| | ||||||||||||| || |||| |||||
Sbjct: 135 aggcccttggataccatcgaaacctctcaaggtgatatcaaagaacacagtgttacgatt 76
Query: 1848 agcatatcgatcgtgcaagtcaatgccatcaaatctctgtggaaattgtacataacaagt 1907
||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 75 agcatatcgatcgtgtcgatcaatgccatcaaatctctgaggaaactgtacatagcaagt 16
Query: 1908 tttc 1911
||||
Sbjct: 15 tttc 12
>gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120E04 similar to Cellulose synthase, mRNA
sequence
Length = 431
Score = 155 bits (78), Expect = 2e-035
Identities = 184/218 (84%), Gaps = 1/218 (0%)
Strand = Plus / Minus
Query: 1208 cccaacggagcacctgattaagacgatcggaaagattgattggtgc-agaacccttgaaa 1266
|||| |||||||| ||||| | |||||| ||||||||||||||||| ||||||||||||
Sbjct: 431 cccatcggagcacttgattcaaacgatctgaaagattgattggtgcgagaacccttgaat 372
Query: 1267 caaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcattttaaaccca 1326
||| |||| ||||||||||| ||||| |||||| | ||||||||||||||||||
Sbjct: 371 gcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccca 312
Query: 1327 gtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattcagtt 1386
|||| |||||| || || || |||||||| ||||| |||||||||||||||||||| |
Sbjct: 311 gtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccccattctgac 252
Query: 1387 ttgtcctcatatccacaactgatgacatggatagcttc 1424
||||| ||||||||||| ||||| ||||| || |||||
Sbjct: 251 ttgtcttcatatccacagctgataacatgaatggcttc 214
>gb|AL750979.1|AL750979 AL750979 RS Pinus pinaster cDNA clone RS02F11 similar to CELLULOSE
SYNTHASE, mRNA sequence
Length = 420
Score = 151 bits (76), Expect = 3e-034
Identities = 208/252 (82%)
Strand = Plus / Minus
Query: 1086 ggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatcg 1145
|||||||| ||||| || || || |||||||| |||||||||| ||| | |||||||
Sbjct: 280 ggatgtgagaggatacactatggtattgatgtacgccagcctctgcaatggtttcaatct 221
Query: 1146 tccattgtaaccataccagataggacaatgtctactaagcagaatttccactgacccaag 1205
|||| |||| |||||||| || |||||||| || || || | |||||| || || |||||
Sbjct: 220 tccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagagccaag 161
Query: 1206 agcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
||||| |||||||| ||||| | |||||| |||||||||||||||||||||||||||||
Sbjct: 160 ggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagaacccttgaa 101
Query: 1266 acaaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcattttaaaccc 1325
||| |||| ||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct: 100 tgcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccc 41
Query: 1326 agtcagaatatc 1337
||||| ||||||
Sbjct: 40 agtcaaaatatc 29
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1009 ttgctaatctcaggaatgataaa 1031
|||||||||||||||||||||||
Sbjct: 357 ttgctaatctcaggaatgataaa 335
>gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_H10_A034 5', mRNA sequence
Length = 557
Score = 151 bits (76), Expect = 3e-034
Identities = 235/288 (81%)
Strand = Plus / Minus
Query: 1086 ggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatcg 1145
|||||||| ||||| || || || |||||||| |||||||||| ||| | |||||||
Sbjct: 291 ggatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatct 232
Query: 1146 tccattgtaaccataccagataggacaatgtctactaagcagaatttccactgacccaag 1205
|||| |||| |||||||| || |||||||| || || || | |||||| || || |||||
Sbjct: 231 tccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaag 172
Query: 1206 agcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
||||| || ||||| ||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct: 171 ggcccatcgaagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaa 112
Query: 1266 acaaggtcgtggtggcatgcagtagattgattgccagccccttgcatgcattttaaaccc 1325
||| |||| ||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct: 111 tgcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccc 52
Query: 1326 agtcagaatatcctccgttactgaaccatagatccagccaatctcttt 1373
||||| |||||| | || || |||||||| ||||| |||||||||||
Sbjct: 51 agtcaaaatatcttatgtgacagaaccataaatccacccaatctcttt 4
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaac 932
|||||||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 491 ccaataacccaaaattgctcattcctccaccattcatcaatgccaac 445
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1009 ttgctaatctcaggaatgataaa 1031
|||||||||||||||||||||||
Sbjct: 368 ttgctaatctcaggaatgataaa 346
>gb|BF778499.1|BF778499 NXSI_085_D12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_085_D12 5' similar to Arabidopsis thaliana
sequence At5g05170 cellulose synthase catalytic subunit
(Ath-B) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 450
Score = 125 bits (63), Expect = 1e-026
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 1153 taaccataccagataggacaatgtctactaagcagaatttccactgacccaagagcccaa 1212
||||||||||| || |||||||| || ||||| ||||||||||| || || | ||||||
Sbjct: 238 taaccataccaaattggacaatgcctgctaagaagaatttccacagagcccaaagcccat 179
Query: 1213 cggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaaacaaggt 1272
|| || || || || |||||||| |||||||| ||||| ||||| |||||||| |||
Sbjct: 178 cgcagaacttggttcagacgatcagaaagattaattggagcagatcccttgaatgcaggg 119
Query: 1273 cgtggtggcatgcagtagattgattgccagccccttgcatgcattttaaacccagtcaga 1332
|| || ||||| ||||| |||||| |||| || | |||||||||||||| ||||||| |
Sbjct: 118 cgaggaggcatacagtatattgatcgccaaccacgagcatgcattttaaagccagtcaaa 59
Query: 1333 atatcctccgttactgaaccatagatccagccaatctcttttcccca 1379
||||| || || || |||||||| ||||| ||||||||||| |||||
Sbjct: 58 atatcttctgtcacagaaccatatatccaaccaatctctttacccca 12
>gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 5', mRNA sequence
Length = 730
Score = 123 bits (62), Expect = 6e-026
Identities = 173/210 (82%)
Strand = Plus / Minus
Query: 1086 ggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatcg 1145
|||||||| ||||| || || || |||||||| |||||||||| ||| | |||||||
Sbjct: 217 ggatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatct 158
Query: 1146 tccattgtaaccataccagataggacaatgtctactaagcagaatttccactgacccaag 1205
|||| |||| |||||||| || |||||||| || || || |||||||| || || |||||
Sbjct: 157 tccagtgtagccataccaaattggacaatgcctgctcagtagaatttcaacagaaccaag 98
Query: 1206 agcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
||||| |||||||| ||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct: 97 ggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaa 38
Query: 1266 acaaggtcgtggtggcatgcagtagattga 1295
||| |||| ||||||||||| |||||
Sbjct: 37 tgcaggacgtgcaggcatgcagtatattga 8
Score = 69.9 bits (35), Expect = 7e-010
Identities = 161/203 (79%)
Strand = Plus / Minus
Query: 730 ggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctca 789
||||| ||||| | |||||||||||| || ||||| ||||||||||| || ||||| |||
Sbjct: 573 ggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcaccatcttca 514
Query: 790 tcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcaga 849
|| || | |||||| || || || ||||| || |||||||| || | |||||||| |
Sbjct: 513 tctgaagactttgatgtgacagtaaagtttgtgtcaatccctgctagaactttcagtaac 454
Query: 850 ccctggaacactgcgaagagatgggcagaggtgccaccaataacccaaaactgctcattt 909
|| || || || || || ||||| || || || |||||||||||||| ||||||||
Sbjct: 453 ccttgaaagacggcaaacagatgtgctgatacacctccaataacccaaaattgctcattc 394
Query: 910 ctccaccaatcttcaatgccaac 932
|||||||| || |||||||||||
Sbjct: 393 ctccaccattcatcaatgccaac 371
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1009 ttgctaatctcaggaatgataaa 1031
|||||||||||||||||||||||
Sbjct: 294 ttgctaatctcaggaatgataaa 272
>gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_B08 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 536
Score = 119 bits (60), Expect = 9e-025
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 1324 ccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattca 1383
||||||||||| ||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 237 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 178
Query: 1384 gttttgtcctcatatccacaactgatgacatggatagcttcctt 1427
|||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct: 177 gttttgtcttcatatccacagctgatgacatgaatagcctcctt 134
>gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_H09 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 537
Score = 119 bits (60), Expect = 9e-025
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 1324 ccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattca 1383
||||||||||| ||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 237 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 178
Query: 1384 gttttgtcctcatatccacaactgatgacatggatagcttcctt 1427
|||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct: 177 gttttgtcttcatatccacagctgatgacatgaatagcctcctt 134
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 119 bits (60), Expect = 9e-025
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 1324 ccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattca 1383
||||||||||| ||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 2518 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 2459
Query: 1384 gttttgtcctcatatccacaactgatgacatggatagcttcctt 1427
|||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct: 2458 gttttgtcttcatatccacagctgatgacatgaatagcctcctt 2415
Score = 103 bits (52), Expect = 5e-020
Identities = 154/188 (81%)
Strand = Plus / Minus
Query: 2017 agcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtgatgctgaaag 2076
||||||||||| || |||| || |||||||| ||||| ||||||||||||||||| ||
Sbjct: 1837 agcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtgatgctggaaa 1778
Query: 2077 cctggtctcttttcacgagagacatagacaagacgtggtaactcatttccatcagtgtcg 2136
|| |||||||| |||||||| ||||| || || || || | |||||| || || || |||
Sbjct: 1777 ccaggtctcttctcacgagaaacatatactagccgaggaagctcattgccttctgtatcg 1718
Query: 2137 agcccaccactgtgccccaagaaaacctgaatcatgccaggatggtccctaggattattc 2196
|| || |||||||| |||||||| || || ||||| ||||||||||| | | ||||||
Sbjct: 1717 aggccgccactgtgacccaagaacacttggatcataccaggatggtcacgggtattatta 1658
Query: 2197 ccaggcca 2204
||||||||
Sbjct: 1657 ccaggcca 1650
Score = 75.8 bits (38), Expect = 1e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 1767 gcatcctgttcccacgtaaactggaccctgaatgccatccagacctttcatgttgatatc 1826
|||||| |||||||| || || || || ||||| ||||||||||||||||||||||||||
Sbjct: 2087 gcatccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatc 2028
Query: 1827 aaagaa 1832
||||||
Sbjct: 2027 aaagaa 2022
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 547 acgattgttggtgtgcggttctgccttcccatgagacccttgaggaa 593
||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 3292 acgatggtgggtgttcggttctgcctgcccatgagacccttgaggaa 3246
Score = 58.0 bits (29), Expect = 3e-006
Identities = 242/313 (77%)
Strand = Plus / Minus
Query: 2422 acccactttctagcaaattctgcggtttctgagagagactcaaaagtcagcatagctgaa 2481
||||| ||||| |||||||||| ||| || |||||||| |||||||| ||||| | |
Sbjct: 1432 acccattttctggcaaattctgaggtctcagagagagattcaaaagtaagcatcgacgct 1373
Query: 2482 ccatcatcagaaacatagcatgacactttgtcaacagggtaatccacagaaagaatggac 2541
|| |||||||| ||||| || ||||| ||||| |||||||| || || ||||| || ||
Sbjct: 1372 ccgtcatcagagacataacaggacacattgtctacagggtagtctactgaaaggattgat 1313
Query: 2542 aaaacagtgttggctgtgatcagtggaggttccttcaatggatccactgtactgacgaag 2601
|| || || ||||| || | || ||||| ||||||| |||||| || ||||| || |||
Sbjct: 1312 aatactgtattggcagtaaccaaaggaggctccttcagtggatctacagtactcacaaag 1253
Query: 2602 acatcaatgggagccagctgtgatggctctccctctctatcatacctcaatgcaagcctg 2661
| |||| || || ||| |||||| || || |||| || ||||| |||| || |
Sbjct: 1252 aggtcaacaggtgcaagcattgatggttcgccttctcgttcgtaccttaatgacagtcga 1193
Query: 2662 tcaagatatgtctcacggttgattggataccattttgggaactgatctagaagccaagac 2721
|||||||| || ||||| |||| || |||| || || |||||||| |||| ||| |||
Sbjct: 1192 tcaagatacgtttcacgactgataggcaaccacttgggaaactgatcaagaatccatgac 1133
Query: 2722 aaggcaaaccaga 2734
|||||||||||||
Sbjct: 1132 aaggcaaaccaga 1120
Score = 54.0 bits (27), Expect = 4e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgc 928
||||||||||| ||||| ||||||| |||||| ||||||||||
Sbjct: 2956 ccaataacccagaactgttcatttcgccaccattcttcaatgc 2914
Score = 44.1 bits (22), Expect = 0.042
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 1156 ccataccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacgg 1215
||||||||||| || |||||||| || | | |||||| ||||| || | |||||||||
Sbjct: 2686 ccataccagattgggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgc 2627
Query: 1216 agcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
| |||||| || | ||| || || ||||||||||| ||||| || |||||
Sbjct: 2626 aacacctggttcaaacggtctgatagattgattggagcagaccctttgaa 2577
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 119 bits (60), Expect = 9e-025
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 1324 ccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattca 1383
||||||||||| ||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 2534 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 2475
Query: 1384 gttttgtcctcatatccacaactgatgacatggatagcttcctt 1427
|||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct: 2474 gttttgtcttcatatccacagctgatgacatgaatagcctcctt 2431
Score = 103 bits (52), Expect = 5e-020
Identities = 154/188 (81%)
Strand = Plus / Minus
Query: 2017 agcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtgatgctgaaag 2076
||||||||||| || |||| || |||||||| ||||| ||||||||||||||||| ||
Sbjct: 1853 agcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtgatgctggaaa 1794
Query: 2077 cctggtctcttttcacgagagacatagacaagacgtggtaactcatttccatcagtgtcg 2136
|| |||||||| |||||||| ||||| || || || || | |||||| || || || |||
Sbjct: 1793 ccaggtctcttctcacgagaaacatatactagccgaggaagctcattgccttctgtatcg 1734
Query: 2137 agcccaccactgtgccccaagaaaacctgaatcatgccaggatggtccctaggattattc 2196
|| || |||||||| |||||||| || || ||||| ||||||||||| | | ||||||
Sbjct: 1733 aggccgccactgtgacccaagaacacttggatcataccaggatggtcacgggtattatta 1674
Query: 2197 ccaggcca 2204
||||||||
Sbjct: 1673 ccaggcca 1666
Score = 75.8 bits (38), Expect = 1e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 1767 gcatcctgttcccacgtaaactggaccctgaatgccatccagacctttcatgttgatatc 1826
|||||| |||||||| || || || || ||||| ||||||||||||||||||||||||||
Sbjct: 2103 gcatccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatc 2044
Query: 1827 aaagaa 1832
||||||
Sbjct: 2043 aaagaa 2038
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 547 acgattgttggtgtgcggttctgccttcccatgagacccttgaggaa 593
||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 3308 acgatggtgggtgttcggttctgcctgcccatgagacccttgaggaa 3262
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccatcta 945
||||||||||| ||||| ||||||| |||||| |||||||||| || || ||||| ||
Sbjct: 2972 ccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccacctc 2913
Query: 946 agctccaatataccagtggcaaaaatggaggcgaaaaga 984
| |||| ||||||||||||||||| ||| |||||||
Sbjct: 2912 atttccagaataccagtggcaaaaattgagatgaaaaga 2874
Score = 58.0 bits (29), Expect = 3e-006
Identities = 242/313 (77%)
Strand = Plus / Minus
Query: 2422 acccactttctagcaaattctgcggtttctgagagagactcaaaagtcagcatagctgaa 2481
||||| ||||| |||||||||| ||| || |||||||| |||||||| ||||| | |
Sbjct: 1448 acccattttctggcaaattctgaggtctcagagagagattcaaaagtaagcatcgacgct 1389
Query: 2482 ccatcatcagaaacatagcatgacactttgtcaacagggtaatccacagaaagaatggac 2541
|| |||||||| ||||| || ||||| ||||| |||||||| || || ||||| || ||
Sbjct: 1388 ccgtcatcagagacataacaggacacattgtctacagggtagtctactgaaaggattgat 1329
Query: 2542 aaaacagtgttggctgtgatcagtggaggttccttcaatggatccactgtactgacgaag 2601
|| || || ||||| || | || ||||| ||||||| |||||| || ||||| || |||
Sbjct: 1328 aatactgtattggcagtaaccaaaggaggctccttcagtggatctacagtactcacaaag 1269
Query: 2602 acatcaatgggagccagctgtgatggctctccctctctatcatacctcaatgcaagcctg 2661
| |||| || || ||| |||||| || || |||| || ||||| |||| || |
Sbjct: 1268 aggtcaacaggtgcaagcattgatggttcgccttctcgttcgtaccttaatgacagtcga 1209
Query: 2662 tcaagatatgtctcacggttgattggataccattttgggaactgatctagaagccaagac 2721
|||||||| || ||||| |||| || |||| || || |||||||| |||| ||| |||
Sbjct: 1208 tcaagatacgtttcacgactgataggcaaccacttgggaaactgatcaagaatccatgac 1149
Query: 2722 aaggcaaaccaga 2734
|||||||||||||
Sbjct: 1148 aaggcaaaccaga 1136
Score = 44.1 bits (22), Expect = 0.042
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 1156 ccataccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacgg 1215
||||||||||| || |||||||| || | | |||||| ||||| || | |||||||||
Sbjct: 2702 ccataccagattgggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgc 2643
Query: 1216 agcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
| |||||| || | ||| || || ||||||||||| ||||| || |||||
Sbjct: 2642 aacacctggttcaaacggtctgatagattgattggagcagaccctttgaa 2593
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 119 bits (60), Expect = 9e-025
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 1324 ccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattca 1383
||||||||||| ||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 2524 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 2465
Query: 1384 gttttgtcctcatatccacaactgatgacatggatagcttcctt 1427
|||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct: 2464 gttttgtcttcatatccacagctgatgacatgaatagcctcctt 2421
Score = 103 bits (52), Expect = 5e-020
Identities = 154/188 (81%)
Strand = Plus / Minus
Query: 2017 agcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtgatgctgaaag 2076
||||||||||| || |||| || |||||||| ||||| ||||||||||||||||| ||
Sbjct: 1843 agcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtgatgctggaaa 1784
Query: 2077 cctggtctcttttcacgagagacatagacaagacgtggtaactcatttccatcagtgtcg 2136
|| |||||||| |||||||| ||||| || || || || | |||||| || || || |||
Sbjct: 1783 ccaggtctcttctcacgagaaacatatactagccgaggaagctcattgccttctgtatcg 1724
Query: 2137 agcccaccactgtgccccaagaaaacctgaatcatgccaggatggtccctaggattattc 2196
|| || |||||||| |||||||| || || ||||| ||||||||||| | | ||||||
Sbjct: 1723 aggccgccactgtgacccaagaacacttggatcataccaggatggtcacgggtattatta 1664
Query: 2197 ccaggcca 2204
||||||||
Sbjct: 1663 ccaggcca 1656
Score = 75.8 bits (38), Expect = 1e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 1767 gcatcctgttcccacgtaaactggaccctgaatgccatccagacctttcatgttgatatc 1826
|||||| |||||||| || || || || ||||| ||||||||||||||||||||||||||
Sbjct: 2093 gcatccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatc 2034
Query: 1827 aaagaa 1832
||||||
Sbjct: 2033 aaagaa 2028
Score = 65.9 bits (33), Expect = 1e-008
Identities = 243/313 (77%)
Strand = Plus / Minus
Query: 2422 acccactttctagcaaattctgcggtttctgagagagactcaaaagtcagcatagctgaa 2481
||||| ||||| |||||||||| ||| || |||||||| |||||||| ||||| | |
Sbjct: 1438 acccattttctggcaaattctgaggtctcagagagagattcaaaagtaagcatcgacgct 1379
Query: 2482 ccatcatcagaaacatagcatgacactttgtcaacagggtaatccacagaaagaatggac 2541
|| |||||||| ||||| || ||||| ||||| |||||||| || || ||||| || ||
Sbjct: 1378 ccgtcatcagagacataacaggacacattgtctacagggtagtctactgaaaggattgat 1319
Query: 2542 aaaacagtgttggctgtgatcagtggaggttccttcaatggatccactgtactgacgaag 2601
|| || || ||||| || | || ||||| ||||||| ||||||||| ||||| || |||
Sbjct: 1318 aatactgtattggcagtaaccaaaggaggctccttcagtggatccacagtactcacaaag 1259
Query: 2602 acatcaatgggagccagctgtgatggctctccctctctatcatacctcaatgcaagcctg 2661
| |||| || || ||| |||||| || || |||| || ||||| |||| || |
Sbjct: 1258 aggtcaacaggtgcaagcattgatggttcgccttctcgttcgtaccttaatgacagtcga 1199
Query: 2662 tcaagatatgtctcacggttgattggataccattttgggaactgatctagaagccaagac 2721
|||||||| || ||||| |||| || |||| || || |||||||| |||| ||| |||
Sbjct: 1198 tcaagatacgtttcacgactgataggcaaccacttgggaaactgatcaagaatccatgac 1139
Query: 2722 aaggcaaaccaga 2734
|||||||||||||
Sbjct: 1138 aaggcaaaccaga 1126
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 547 acgattgttggtgtgcggttctgccttcccatgagacccttgaggaa 593
||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 3298 acgatggtgggtgttcggttctgcctgcccatgagacccttgaggaa 3252
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccatcta 945
||||||||||| ||||| ||||||| |||||| |||||||||| || || ||||| ||
Sbjct: 2962 ccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccacctc 2903
Query: 946 agctccaatataccagtggcaaaaatggaggcgaaaaga 984
| |||| ||||||||||||||||| ||| |||||||
Sbjct: 2902 atttccagaataccagtggcaaaaattgagatgaaaaga 2864
Score = 44.1 bits (22), Expect = 0.042
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 1156 ccataccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacgg 1215
||||||||||| || |||||||| || | | |||||| ||||| || | |||||||||
Sbjct: 2692 ccataccagattgggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgc 2633
Query: 1216 agcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
| |||||| || | ||| || || ||||||||||| ||||| || |||||
Sbjct: 2632 aacacctggttcaaacggtctgatagattgattggagcagaccctttgaa 2583
Score = 44.1 bits (22), Expect = 0.042
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 3432 ctcatactcatagcatgggcggcagacagggaaggcacactcattgcaggcaac 3485
||||||||||||||| || || |||||||| || | |||||||| ||||||||
Sbjct: 371 ctcatactcatagcacggccgacagacaggaaacccgcactcattacaggcaac 318
>gb|DN609460.1|DN609460 EST962510 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAD15, mRNA sequence
Length = 400
Score = 115 bits (58), Expect = 1e-023
Identities = 172/210 (81%)
Strand = Plus / Plus
Query: 1086 ggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatcg 1145
|||||||| ||||| || || || |||||||| |||||||||| ||| | |||||||
Sbjct: 151 ggatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatct 210
Query: 1146 tccattgtaaccataccagataggacaatgtctactaagcagaatttccactgacccaag 1205
|||| |||| |||||||| || |||||||| || || || | |||||| || || |||||
Sbjct: 211 tccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaag 270
Query: 1206 agcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
||||| |||||||| ||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct: 271 ggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaa 330
Query: 1266 acaaggtcgtggtggcatgcagtagattga 1295
||| |||| ||||||||||| |||||
Sbjct: 331 tgcaggacgtgcaggcatgcagtatattga 360
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1009 ttgctaatctcaggaatgataaa 1031
|||||||||||||||||||||||
Sbjct: 74 ttgctaatctcaggaatgataaa 96
>gb|DT627755.1|DT627755 EST1156504 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCQ29 5' end, mRNA sequence
Length = 376
Score = 115 bits (58), Expect = 1e-023
Identities = 172/210 (81%)
Strand = Plus / Minus
Query: 1086 ggatgtgattggatatacaatagtgttgatgtaagccagcctctccaaaagcttcaatcg 1145
|||||||| ||||| || || || |||||||| |||||||||| ||| | |||||||
Sbjct: 226 ggatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatct 167
Query: 1146 tccattgtaaccataccagataggacaatgtctactaagcagaatttccactgacccaag 1205
|||| |||| |||||||| || |||||||| || || || | |||||| || || |||||
Sbjct: 166 tccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaag 107
Query: 1206 agcccaacggagcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
||||| |||||||| ||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct: 106 ggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaa 47
Query: 1266 acaaggtcgtggtggcatgcagtagattga 1295
||| |||| ||||||||||| |||||
Sbjct: 46 tgcaggacgtgcaggcatgcagtatattga 17
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1009 ttgctaatctcaggaatgataaa 1031
|||||||||||||||||||||||
Sbjct: 303 ttgctaatctcaggaatgataaa 281
>gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus pinaster cDNA clone PPJM13, mRNA
sequence
Length = 520
Score = 111 bits (56), Expect = 2e-022
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 1324 ccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattca 1383
||||||||||| ||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 461 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 402
Query: 1384 gttttgtcctcatatccacaactgatgacatggatagcttcctt 1427
|||||||| |||||||| || ||||||||||| ||||| |||||
Sbjct: 401 gttttgtcttcatatccccagctgatgacatgaatagcctcctt 358
>gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 3', mRNA sequence
Length = 852
Score = 109 bits (55), Expect = 9e-022
Identities = 352/451 (78%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 560 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 501
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 500 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 441
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt 661
|||| | |||||||| | ||||| ||||| |||||||| | |||||||| ||||| |
Sbjct: 440 gatgaacaatcacccacagagagaaaaacagttttccaaacaatggaccccaagattgat 381
Query: 662 agccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaa 721
| ||||| ||||| || | |||| ||||| || | || || || || | ||||| |
Sbjct: 380 aaccactattaatagcttgggaaacacctgctactacaccaacaagatttaccacaagca 321
Query: 722 cagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgc 781
||| || ||||| ||||| | |||||||||||| || ||||| ||||||||||| || |
Sbjct: 320 aagtagttggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcac 261
Query: 782 catcctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacactt 841
|||| ||||| || | |||||| || || || ||||| || |||||||| || | ||||
Sbjct: 260 catcttcatctgaagactttgatgtgacagtaaagtttgtgtcaatccctgctagaactt 201
Query: 842 tcagcagaccctggaacactgcgaagagatgggcagaggtgccaccaataacccaaaact 901
|||| | || || || || || || ||||| || || || |||||||||||||| |
Sbjct: 200 tcagtaacccttgaaagacggcaaacagatgtgctgatacacctccaataacccaaaatt 141
Query: 902 gctcatttctccaccaatcttcaatgccaac 932
||||||| |||||||| || |||||||||||
Sbjct: 140 gctcattcctccaccattcatcaatgccaac 110
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1009 ttgctaatctcaggaatgataaa 1031
|||||||||||||||||||||||
Sbjct: 33 ttgctaatctcaggaatgataaa 11
>gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_100_C02 5' similar to Arabidopsis thaliana sequence
At5g05170 cellulose synthase catalytic subunit (Ath-B)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 405
Score = 101 bits (51), Expect = 2e-019
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 1345 actgaaccatagatccagccaatctcttttccccattcagttttgtcctcatatccacaa 1404
||||| ||||||||||| |||| ||||||||||||||| |||||||| |||||||||||
Sbjct: 271 actgatccatagatccatccaagctcttttccccattccgttttgtcttcatatccacag 212
Query: 1405 ctgatgacatggatagcttcctt 1427
||||||||||| ||||| |||||
Sbjct: 211 ctgatgacatgaatagcctcctt 189
>gb|AW985238.1|AW985238 NXNV_132_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_132_G11 5' similar to Arabidopsis thaliana sequence
At4g39350 cellulose synthase catalytic subunit (Ath-A)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 425
Score = 99.6 bits (50), Expect = 8e-019
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 1796 gaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagcatatc 1855
|||||||||||| ||||||| |||||||| |||||||| | ||| ||||| ||||| |
Sbjct: 324 gaatgccatccaannctttcatattgatatcgaagaaaaccacgttgcgattggcataac 265
Query: 1856 gatcgtgcaagtcaatgccatcaaatctctgtggaaattgtacataacaagttttccttc 1915
|||||||| ||||| |||||||||||||||||||| || |||||||| |||| |||
Sbjct: 264 gatcgtgcctatcaataccatcaaatctctgtggaaactgcacataacagactttctttc 205
Query: 1916 ctagagccggatccatcatgaagcacat 1943
| | || |||||||||||||| |||||
Sbjct: 204 caacagtaggatccatcatgaaacacat 177
>gb|DR089385.1|DR089385 RTAL1_8_G12.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_8_G12_A029 3', mRNA sequence
Length = 751
Score = 97.6 bits (49), Expect = 3e-018
Identities = 274/349 (78%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 353 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 294
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 293 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 234
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt 661
|||| | |||||||| | ||||| ||||| |||||||| | |||||||| ||||| |
Sbjct: 233 gatgaacaatcacccacagagagaaaaacagttttccaaacaatggaccccaagattgat 174
Query: 662 agccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaa 721
| ||||| ||||| || | |||| ||||| || | || || || || | ||||| |
Sbjct: 173 aaccactattaatagcttgggaaacacctgctactacaccaacaagatttaccacaagca 114
Query: 722 cagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgc 781
||| || ||||| ||||| | |||||||||||| || ||||| ||||||||||| || |
Sbjct: 113 aagtagttggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcac 54
Query: 782 catcctcatcagatgcctttgaggtaactgtgaagttggtatcaatccc 830
|||| ||||| || | |||||| || || || ||||| || ||||||||
Sbjct: 53 catcttcatctgaagactttgatgtgacagtaaagtttgtgtcaatccc 5
>gb|BF186257.1|BF186257 NXCI_135_B10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_135_B10 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 371
Score = 95.6 bits (48), Expect = 1e-017
Identities = 262/334 (78%)
Strand = Plus / Minus
Query: 497 tcacccacagcaaggagaagatagatgcaagaaggatggaccagacaatgacgattgttg 556
||||||| ||||||||||| || | |||||||| || ||||| ||||| || |||||||
Sbjct: 346 tcacccaaagcaaggagaatatnnacgcaagaagaattgaccaaacaataactattgttg 287
Query: 557 gtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatggaggatcaccc 616
|||| |||||||| | ||||| | ||||||||||| || || ||||| | |||||||
Sbjct: 286 gtgtccggttctggcgacccattaatcccttgaggaatggataaagatgaacaatcaccc 227
Query: 617 agatcgagaagaacagctttccaaagagcggaccccaggattggtagccactgttaatgg 676
| | ||||| ||||| |||||||| | |||||||| ||||| || ||||| ||||| |
Sbjct: 226 acagagagaaaaacagttttccaaacaatggaccccaagattgataaccactattaatag 167
Query: 677 catacgaaattcctgccaccattccgaccaggttaatgacaagaacagtggtcggaggaa 736
| | |||| ||||| || | || || || || | ||||| | ||| || ||||| |
Sbjct: 166 cttgggaaacacctgctactacaccaacaagatttaccacaagcaaagtagttggaggga 107
Query: 737 tgagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctcatcagatg 796
|||| | ||||||||||||||| ||||| ||||||||||| || ||||| ||||| || |
Sbjct: 106 tgagaagactggtccacttgaaaacataaagctcagcaaattcaccatcttcatctgaag 47
Query: 797 cctttgaggtaactgtgaagttggtatcaatccc 830
|||||| || || || ||||| || ||||||||
Sbjct: 46 actttgatgtgacagtaaagtttgtgtcaatccc 13
>gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_A07_A029 3', mRNA sequence
Length = 610
Score = 91.7 bits (46), Expect = 2e-016
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1324 ccagtcagaatatcctccgttactgaaccatagatccagccaatctcttttccccattca 1383
||||||||||| ||||| || ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 522 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 581
Query: 1384 gttttgtcctcatatccacaactgatgaca 1413
| |||||| ||||||||||| |||||||||
Sbjct: 582 g-tttgtcttcatatccacagctgatgaca 610
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccatcta 945
||||||||||| ||||| ||||||| |||||| |||||||||| || || ||||| ||
Sbjct: 84 ccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccacctc 143
Query: 946 agctccaatataccagtggcaaaaatggaggcgaaaaga 984
| |||| ||||||||||||||||| ||| |||||||
Sbjct: 144 atttccagaataccagtggcaaaaattgagatgaaaaga 182
Score = 44.1 bits (22), Expect = 0.042
Identities = 88/110 (80%)
Strand = Plus / Plus
Query: 1156 ccataccagataggacaatgtctactaagcagaatttccactgacccaagagcccaacgg 1215
||||||||||| || |||||||| || | | |||||| ||||| || | |||||||||
Sbjct: 354 ccataccagattgggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgc 413
Query: 1216 agcacctgattaagacgatcggaaagattgattggtgcagaacccttgaa 1265
| |||||| || | ||| || || ||||||||||| ||||| || |||||
Sbjct: 414 aacacctggttcaaacggtctgatagattgattggagcagaccctttgaa 463
>gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACK80 3' end, mRNA sequence
Length = 707
Score = 91.7 bits (46), Expect = 2e-016
Identities = 244/310 (78%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 484 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 425
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 424 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 365
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt 661
|||| | |||||||| | ||||| ||||| |||||||| | |||||||| ||||| |
Sbjct: 364 gatgaacaatcacccacagagagaaaaacagttttccaaacaatggaccccaagattgat 305
Query: 662 agccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaa 721
| ||||| ||||| || | |||| ||||| || | || || || || | ||||| |
Sbjct: 304 aaccactattaatagcttgggaaacacctgctactacaccaacaagatttaccacaagca 245
Query: 722 cagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgc 781
||| || ||||| ||||| | |||||||||||| || ||||| ||||||||||| || |
Sbjct: 244 aagtagttggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcac 185
Query: 782 catcctcatc 791
|||| |||||
Sbjct: 184 catcttcatc 175
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaac 932
|||||||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 80 ccaataacccaaaattgctcattcctccaccattcatcaatgccaac 34
>gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGG33 3' end, mRNA sequence
Length = 761
Score = 91.7 bits (46), Expect = 2e-016
Identities = 244/310 (78%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 484 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 425
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 424 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 365
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt 661
|||| | |||||||| | ||||| ||||| |||||||| | |||||||| ||||| |
Sbjct: 364 gatgaacaatcacccacagagagaaaaacagttttccaaacaatggaccccaagattgat 305
Query: 662 agccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaa 721
| ||||| ||||| || | |||| ||||| || | || || || || | ||||| |
Sbjct: 304 aaccactattaatagcttgggaaacacctgctactacaccaacaagatttaccacaagca 245
Query: 722 cagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgc 781
||| || ||||| ||||| | |||||||||||| || ||||| ||||||||||| || |
Sbjct: 244 aagtagttggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcac 185
Query: 782 catcctcatc 791
|||| |||||
Sbjct: 184 catcttcatc 175
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaac 932
|||||||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 80 ccaataacccaaaattgctcattcctccaccattcatcaatgccaac 34
>gb|CO369885.1|CO369885 RTK1_55_A04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_55_A04_A029 3', mRNA sequence
Length = 768
Score = 89.7 bits (45), Expect = 8e-016
Identities = 156/193 (80%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 305 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 246
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 245 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 186
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt 661
|||| | |||||||| | ||||| ||||| |||||||| | |||||||| ||||| |
Sbjct: 185 gatgaacaatcacccacagagagaaaaacagttttccaaacaatggaccccaagattgat 126
Query: 662 agccactgttaat 674
| ||||| |||||
Sbjct: 125 aaccactattaat 113
>gb|CX647876.1|CX647876 COLD1_25_C03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_C03_A029 3', mRNA sequence
Length = 847
Score = 89.7 bits (45), Expect = 8e-016
Identities = 273/349 (78%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 363 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 304
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 303 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 244
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt 661
|||| | |||||||| | ||||| || || |||||||| | |||||||| ||||| |
Sbjct: 243 gatgaacaatcacccacagagagaaaaaaagttttccaaacaatggaccccaagattgat 184
Query: 662 agccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaa 721
| ||||| ||||| || | |||| ||||| || | || || || || | ||||| |
Sbjct: 183 aaccactattaatagcttgggaaacacctgctactacaccaacaagatttaccacaagca 124
Query: 722 cagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgc 781
||| || ||||| ||||| | |||||||||||| || ||||| ||||||||||| || |
Sbjct: 123 aagtagttggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcac 64
Query: 782 catcctcatcagatgcctttgaggtaactgtgaagttggtatcaatccc 830
|||| ||||| || | |||||| || || || ||||| || ||||||||
Sbjct: 63 catcttcatctgaagactttgatgtgacagtaaagtttgtgtcaatccc 15
>gb|DR746030.1|DR746030 RTCU1_34_F01.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_34_F01_A029 3', mRNA sequence
Length = 711
Score = 89.7 bits (45), Expect = 8e-016
Identities = 156/193 (80%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 224 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 165
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 164 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 105
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt 661
|||| | |||||||| | ||||| ||||| |||||||| | |||||||| ||||| |
Sbjct: 104 gatgaacaatcacccacagagagaaaaacagttttccaaacaatggaccccaagattgat 45
Query: 662 agccactgttaat 674
| ||||| |||||
Sbjct: 44 aaccactattaat 32
>gb|BX251307.1|BX251307 BX251307 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP048A02, mRNA sequence
Length = 671
Score = 87.7 bits (44), Expect = 3e-015
Identities = 284/364 (78%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 428 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 369
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| | |||||| | ||||| | ||||||||||| || || |
Sbjct: 368 caataactattgttggtgtcctgttctggcgacccattaatcccttgaggaatggataaa 309
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggt 661
|||| | |||||||| | ||||| ||||| |||||||| | |||||||| ||||| |
Sbjct: 308 gatgaacaatcacccacagagagaaaaacagttttccaaacaatggaccccaagattgat 249
Query: 662 agccactgttaatggcatacgaaattcctgccaccattccgaccaggttaatgacaagaa 721
| ||||| ||||| || | |||| ||||| || | || || || || | ||||| |
Sbjct: 248 aaccactattaatagcttgggaaacacctgctactacaccaacaagatttaccacaagca 189
Query: 722 cagtggtcggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgc 781
||| || ||||| ||||| | |||||||||||| || ||||| ||||||||||| || |
Sbjct: 188 aagtagttggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcac 129
Query: 782 catcctcatcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacactt 841
|||| ||||| || | ||| || || || || ||||| || |||||||| |||| ||||
Sbjct: 128 catcttcatctgaagacttcgatgtgacagtaaagtttgtgtcaatccctgccagaactt 69
Query: 842 tcag 845
||||
Sbjct: 68 tcag 65
>gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP021G11 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 708
Score = 85.7 bits (43), Expect = 1e-014
Identities = 101/119 (84%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaa-ccatagatccagccaatctc 1370
|||||||| || || ||||| |||||||| || |||||| ||||| ||||| || |||||
Sbjct: 613 tgcattttgaagcctgtcaggatatcctctgtcactgaaaccatatatccatccgatctc 554
Query: 1371 ttttccccattcagttttgtcctcatatccacaactgatgacatggatagcttccttta 1429
||||||||||||||||| ||||| ||||| || |||||||| || || ||||||||||
Sbjct: 553 ctttccccattcagttttctcctcgtatccgcagctgatgacgtgaatggcttccttta 495
Score = 73.8 bits (37), Expect = 5e-011
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 1731 aggatcgtatccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaactgg 1790
|||||| || ||||||| ||| || || |||||| |||||| || ||||| || |||||
Sbjct: 168 aggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactgg 109
Query: 1791 accctgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagc 1850
||||| |||||||| ||||| |||||||||||||| |||||||| |||| | || ||
Sbjct: 108 cccctggatgccatctagacccttcatgttgatatcgaagaaaacagtgtttctgtttgc 49
Query: 1851 atatcgatc 1859
|||||||||
Sbjct: 48 atatcgatc 40
>gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092C09, mRNA sequence
Length = 690
Score = 81.8 bits (41), Expect = 2e-013
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 487 ggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaatg 546
|||||||| || |||||||||| ||||| ||||| || || ||||| ||||| | |
Sbjct: 668 ggatcgattttaacccacagcagagagaaaatagacgcgagcaggatagaccacaataca 609
Query: 547 acgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatgg 606
||||| || || |||||||| |||| ||||||||||| ||||||||||| || | ||||
Sbjct: 608 acgatggtaggcgtgcggttttgccgacccatgagacctttgaggaagggatacaaatgg 549
Query: 607 aggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcca 666
|| |||||||| | ||||| |||| ||| ||||| || || ||||| || |||||||||
Sbjct: 548 agaatcacccatactgagaaaaacaacttcccaaacagaggtccccatgactggtagcca 489
Query: 667 ctgttaatggcat 679
|||||| |||||
Sbjct: 488 ttgttaagggcat 476
>gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099B08, mRNA sequence
Length = 707
Score = 81.8 bits (41), Expect = 2e-013
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 487 ggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaatg 546
|||||||| || |||||||||| ||||| ||||| || || ||||| ||||| | |
Sbjct: 381 ggatcgattttaacccacagcagagagaaaatagacgcgagcaggatagaccacaataca 322
Query: 547 acgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatgg 606
||||| || || |||||||| |||| ||||||||||| ||||||||||| || | ||||
Sbjct: 321 acgatggtaggcgtgcggttttgccgacccatgagacctttgaggaagggatacaaatgg 262
Query: 607 aggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcca 666
|| |||||||| | ||||| |||| ||| ||||| || || ||||| || |||||||||
Sbjct: 261 agaatcacccatactgagaaaaacaacttcccaaacagaggtccccatgactggtagcca 202
Query: 667 ctgttaatggcat 679
|||||| |||||
Sbjct: 201 ttgttaagggcat 189
>gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP108A02, mRNA sequence
Length = 673
Score = 81.8 bits (41), Expect = 2e-013
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 487 ggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaatg 546
|||||||| || |||||||||| ||||| ||||| || || ||||| ||||| | |
Sbjct: 319 ggatcgattttaacccacagcagagagaaaatagacgcgagcaggatagaccacaataca 260
Query: 547 acgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatgg 606
||||| || || |||||||| |||| ||||||||||| ||||||||||| || | ||||
Sbjct: 259 acgatggtaggcgtgcggttttgccgacccatgagacctttgaggaagggatacaaatgg 200
Query: 607 aggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcca 666
|| |||||||| | ||||| |||| ||| ||||| || || ||||| || |||||||||
Sbjct: 199 agaatcacccatactgagaaaaacaacttcccaaacagaggtccccatgactggtagcca 140
Query: 667 ctgttaatggcat 679
|||||| |||||
Sbjct: 139 ttgttaagggcat 127
>gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP004G04, mRNA sequence
Length = 561
Score = 81.8 bits (41), Expect = 2e-013
Identities = 155/193 (80%)
Strand = Plus / Plus
Query: 487 ggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccagacaatg 546
|||||||| || |||||||||| ||||| ||||| || || ||||| ||||| | |
Sbjct: 268 ggatcgattttaacccacagcagagagaaaatagacgcgagcaggatagaccacaataca 327
Query: 547 acgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtagagatgg 606
||||| || || |||||||| |||| ||||||||||| ||||||||||| || | ||||
Sbjct: 328 acgatggtaggcgtgcggttttgccgacccatgagacctttgaggaagggatacaaatgg 387
Query: 607 aggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagcca 666
|| |||||||| | ||||| |||| ||| ||||| || || ||||| || |||||||||
Sbjct: 388 agaatcacccatactgagaaaaacaacttcccaaacagaggtccccatgactggtagcca 447
Query: 667 ctgttaatggcat 679
|||||| |||||
Sbjct: 448 ttgttaagggcat 460
>gb|BF777175.1|BF777175 NXSI_066_C05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_066_C05 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 342
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctct 1371
|||||||| || || ||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 179 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 120
Query: 1372 tttccccattcagttttgtcctcatatcc 1400
||||||||||||||||| ||||| |||||
Sbjct: 119 tttccccattcagttttctcctcgtatcc 91
>gb|BF778225.1|BF778225 NXSI_083_H07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_083_H07 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 421
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctct 1371
|||||||| || || ||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 92 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 33
Query: 1372 tttccccattcagttttgtcctcatatcc 1400
||||||||||||||||| ||||| |||||
Sbjct: 32 tttccccattcagttttctcctcgtatcc 4
>gb|BM493879.1|BM493879 NXLV_071_A06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_071_A06 5' similar to Arabidopsis thaliana
sequence At5g05170 cellulose synthase catalytic subunit
(Ath-B) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 276
Score = 81.8 bits (41), Expect = 2e-013
Identities = 130/160 (81%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
||||||||| ||| ||||||| ||||||||||| || || |||||||| || ||||| |
Sbjct: 188 tgaaaggatntatcctcacccaaagcaaggagaatatggacgcaagaagaattgaccaaa 129
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 128 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 69
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaa 641
|||| | |||||||| | ||||| ||||| ||||||||
Sbjct: 68 gatgaacaatcacccacagagagaaaaacagttttccaaa 29
>gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_F06_A021 5', mRNA sequence
Length = 716
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctct 1371
|||||||| || || ||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 199 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 140
Query: 1372 tttccccattcagttttgtcctcatatcc 1400
||||||||||||||||| ||||| |||||
Sbjct: 139 tttccccattcagttttctcctcgtatcc 111
>gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132B11 similar to Cellulose synthase, mRNA
sequence
Length = 540
Score = 81.8 bits (41), Expect = 2e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 883 ccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccgctccat 942
|||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 107 ccaccaatcacccaaaactgctcatttctccaccaatcatcaataccaaccccactccat 48
Query: 943 c 943
|
Sbjct: 47 c 47
>gb|CO369344.1|CO369344 RTK1_46_B01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_B01_A029 5', mRNA sequence
Length = 709
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctct 1371
|||||||| || || ||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 217 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 158
Query: 1372 tttccccattcagttttgtcctcatatcc 1400
||||||||||||||||| ||||| |||||
Sbjct: 157 tttccccattcagttttctcctcgtatcc 129
>gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_C12_A029 5', mRNA sequence
Length = 754
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctct 1371
|||||||| || || ||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 655 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 596
Query: 1372 tttccccattcagttttgtcctcatatcc 1400
||||||||||||||||| ||||| |||||
Sbjct: 595 tttccccattcagttttctcctcgtatcc 567
Score = 73.8 bits (37), Expect = 5e-011
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 1731 aggatcgtatccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaactgg 1790
|||||| || ||||||| ||| || || |||||| |||||| || ||||| || |||||
Sbjct: 212 aggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactgg 153
Query: 1791 accctgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagc 1850
||||| |||||||| ||||| |||||||||||||| |||||||| |||| | || ||
Sbjct: 152 cccctggatgccatctagacccttcatgttgatatcgaagaaaacagtgtttctgtttgc 93
Query: 1851 atatcgatc 1859
|||||||||
Sbjct: 92 atatcgatc 84
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctct 1371
|||||||| || || ||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 2351 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 2292
Query: 1372 tttccccattcagttttgtcctcatatcc 1400
||||||||||||||||| ||||| |||||
Sbjct: 2291 tttccccattcagttttctcctcgtatcc 2263
Score = 71.9 bits (36), Expect = 2e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 564 gttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccagatcga 623
|||||||||||||| ||||||||||||||||| || ||||| | ||||||||| |
Sbjct: 3099 gttctgccttcccagaagacccttgaggaagggatacagatgcaatatcacccagcaggc 3040
Query: 624 gaagaacagctttccaaagagcggaccccaggattggtag 663
|||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 3039 gaagaatagctttccaaaaagcggtccccatgactggtag 3000
Score = 71.9 bits (36), Expect = 2e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 1732 ggatcgtatccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaactgga 1791
||||| || ||||||| ||| || || |||||| |||||| || ||||| || |||||
Sbjct: 1907 ggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactggc 1848
Query: 1792 ccctgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagca 1851
||||| |||||||| ||||| |||||||||||||| |||||||| |||| | || |||
Sbjct: 1847 ccctggatgccatctagacccttcatgttgatatcgaagaaaacagtgtttctgtttgca 1788
Query: 1852 tatcgatc 1859
||||||||
Sbjct: 1787 tatcgatc 1780
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 2009 catttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtgat 2068
||||||| || || ||||| || |||| ||| || ||||| ||||| || |||||||| |
Sbjct: 1630 catttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtggt 1571
Query: 2069 gctgaaagcctggtctcttttcacgagagacatagacaag 2108
||||| | || |||||||| |||||||| |||||||||||
Sbjct: 1570 gctgatatccaggtctcttctcacgagaaacatagacaag 1531
Score = 60.0 bits (30), Expect = 7e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 3393 agtcttgcactgggggcagcattggttcccctccttgcgctcatactcatagcatgggcg 3452
|||||||||||| |||||||| ||||||| ||||| | ||| |||||||| || || ||
Sbjct: 309 agtcttgcactgagggcagcaccggttcccatcctttctctcgtactcataacagggacg 250
Query: 3453 gcagacagggaaggcacactcattgcaggc 3482
|| |||||||| ||||||| ||||||||
Sbjct: 249 acacacagggaatccacactcgttgcaggc 220
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 2341 ttgtccttcaggtaatctattttttgagcaaagtaaaa 2378
||||| ||||||||||| |||||||||| |||||||||
Sbjct: 1298 ttgtctttcaggtaatcaattttttgagaaaagtaaaa 1261
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 2681 tgattggataccattttgggaactgatctagaagccaagacaaggcaaaccagacctcgc 2740
|||| ||| |||| || ||||||||||| |||| ||| || ||||| ||||||| |||||
Sbjct: 958 tgatgggaaaccacttggggaactgatcaagaatccaggagaaggcgaaccagatctcgc 899
Query: 2741 agataa 2746
||||||
Sbjct: 898 agataa 893
Score = 50.1 bits (25), Expect = 7e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 2544 aacagtgttggctgtgatcagtggaggttccttcaatggatccactgtactgacgaagac 2603
|||||| || ||||| ||||| ||||| || |||| ||||||||||||||| || ||||
Sbjct: 1095 aacagtattagctgtaatcagaggaggctctttcagtggatccactgtactcacaaagaa 1036
Query: 2604 atcaa 2608
|||||
Sbjct: 1035 atcaa 1031
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 1312 tgcattttaaacccagtcagaatatcctccgttactgaaccatagatccagccaatctct 1371
|||||||| || || ||||| |||||||| || ||||||||||| ||||| || |||||
Sbjct: 1424 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 1365
Query: 1372 tttccccattcagttttgtcctcatatcc 1400
||||||||||||||||| ||||| |||||
Sbjct: 1364 tttccccattcagttttctcctcgtatcc 1336
Score = 71.9 bits (36), Expect = 2e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 564 gttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccagatcga 623
|||||||||||||| ||||||||||||||||| || ||||| | ||||||||| |
Sbjct: 2172 gttctgccttcccagaagacccttgaggaagggatacagatgcaatatcacccagcaggc 2113
Query: 624 gaagaacagctttccaaagagcggaccccaggattggtag 663
|||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 2112 gaagaatagctttccaaaaagcggtccccatgactggtag 2073
Score = 71.9 bits (36), Expect = 2e-010
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 1732 ggatcgtatccatacaaagcctgtctattgaaacagcatcctgttcccacgtaaactgga 1791
||||| || ||||||| ||| || || |||||| |||||| || ||||| || |||||
Sbjct: 980 ggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactggc 921
Query: 1792 ccctgaatgccatccagacctttcatgttgatatcaaagaaaactatgttccgattagca 1851
||||| |||||||| ||||| |||||||||||||| |||||||| |||| | || |||
Sbjct: 920 ccctggatgccatctagacccttcatgttgatatcgaagaaaacagtgtttctgtttgca 861
Query: 1852 tatcgatc 1859
||||||||
Sbjct: 860 tatcgatc 853
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 2009 catttgtcagcacagcagatacacgaatcagcgcattcattgcaccagccttcttgtgat 2068
||||||| || || ||||| || |||| ||| || ||||| ||||| || |||||||| |
Sbjct: 703 catttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtggt 644
Query: 2069 gctgaaagcctggtctcttttcacgagagacatagacaag 2108
||||| | || |||||||| |||||||| |||||||||||
Sbjct: 643 gctgatatccaggtctcttctcacgagaaacatagacaag 604
Score = 50.1 bits (25), Expect = 7e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 2544 aacagtgttggctgtgatcagtggaggttccttcaatggatccactgtactgacgaagac 2603
|||||| || ||||| ||||| ||||| || |||| ||||||||||||||| || ||||
Sbjct: 168 aacagtattagctgtaatcagaggaggctctttcagtggatccactgtactcacaaagaa 109
Query: 2604 atcaa 2608
|||||
Sbjct: 108 atcaa 104
Score = 44.1 bits (22), Expect = 0.042
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2341 ttgtccttcaggtaatctattttttgagcaaagtaaaa 2378
||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 371 ttgtctttcaggtaatcaattttctgagaaaagtaaaa 334
>gb|BM428045.1|BM428045 NXRV_008_A09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_008_A09 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 602
Score = 79.8 bits (40), Expect = 8e-013
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 564 gttctgccttcccatgagacccttgaggaaggggtagagatggaggatcacccagatcga 623
|||||||||||||| ||||||||||||||||| |||||||| | ||||||||| |
Sbjct: 229 gttctgccttcccagaagacccttgaggaagggatagagatgcaatatcacccagcaggc 170
Query: 624 gaagaacagctttccaaagagcggaccccaggattggtag 663
|||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 169 gaagaatagctttccaaaaagcggtccccatgactggtag 130
>gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAA42, mRNA sequence
Length = 809
Score = 79.8 bits (40), Expect = 8e-013
Identities = 112/136 (82%)
Strand = Plus / Plus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| || | |||||| || || | |||||| |||||||| |
Sbjct: 407 tgaaaggatctatcctcacccaaagtagggagaatatggacgaaagaagaatggaccaaa 466
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
||||||| || || ||||| |||||||| | ||||| | |||||||||||||| ||||
Sbjct: 467 caatgactatagtgggtgtccggttctggcgacccattaatcccttgaggaagggataga 526
Query: 602 gatggaggatcaccca 617
|||||| ||||||||
Sbjct: 527 gatggacaatcaccca 542
Score = 60.0 bits (30), Expect = 7e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 730 ggaggaatgagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctca 789
||||| ||||| | ||||||||||||||| |||||||| || |||||||| ||||| |||
Sbjct: 655 ggagggatgagaagactggtccacttgaaaacatatagttctgcaaagtcaccatcatca 714
Query: 790 tc 791
||
Sbjct: 715 tc 716
>gb|DR744391.1|DR744391 RTCU1_22_E01.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_22_E01_A029 3', mRNA sequence
Length = 631
Score = 79.8 bits (40), Expect = 8e-013
Identities = 130/160 (81%)
Strand = Plus / Minus
Query: 482 tgaaaggatcgatcttcacccacagcaaggagaagatagatgcaagaaggatggaccaga 541
|||||||||| ||| ||||||| |||| |||||| || || |||||||| || ||||| |
Sbjct: 171 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 112
Query: 542 caatgacgattgttggtgtgcggttctgccttcccatgagacccttgaggaaggggtaga 601
|||| || ||||||||||| |||||||| | ||||| | ||||||||||| || || |
Sbjct: 111 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 52
Query: 602 gatggaggatcacccagatcgagaagaacagctttccaaa 641
|||| | |||||||| | ||||| ||||| ||||||||
Sbjct: 51 gatgaacaatcacccacagagagaaaaacagttttccaaa 12
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 465,176
Number of Sequences: 355925
Number of extensions: 465176
Number of successful extensions: 122819
Number of sequences better than 0.5: 273
Number of HSP's better than 0.5 without gapping: 272
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 121991
Number of HSP's gapped (non-prelim): 803
length of query: 3838
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3818
effective length of database: 210,158,737
effective search space: 802386057866
effective search space used: 802386057866
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)