BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2430769.2.1
         (617 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO197922.1|CO197922  GEO1_10_C03.b1_A029 Root gravitropis...    40   0.10 
gb|DR050886.1|DR050886  RTBOR1_26_G03.b1_A029 Roots plus add...    40   0.10 
gb|DR095033.1|DR095033  STRR1_18_H06.b1_A033 Stem Response R...    40   0.10 

>gb|CO197922.1|CO197922 GEO1_10_C03.b1_A029 Root gravitropism April 2003 test Pinus taeda
           cDNA clone GEO1_10_C03_A029 3', mRNA sequence
          Length = 693

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 gacgcggcggcagatggtga 269
           ||||||||||||||||||||
Sbjct: 3   gacgcggcggcagatggtga 22



>gb|DR050886.1|DR050886 RTBOR1_26_G03.b1_A029 Roots plus added boron Pinus taeda cDNA clone
           RTBOR1_26_G03_A029 3', mRNA sequence
          Length = 701

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 gacgcggcggcagatggtga 269
           ||||||||||||||||||||
Sbjct: 3   gacgcggcggcagatggtga 22



>gb|DR095033.1|DR095033 STRR1_18_H06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
           STRR1_18_H06_A033 3', mRNA sequence
          Length = 840

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 gacgcggcggcagatggtga 269
           ||||||||||||||||||||
Sbjct: 153 gacgcggcggcagatggtga 172



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,032
Number of Sequences: 355925
Number of extensions: 50032
Number of successful extensions: 16205
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16202
Number of HSP's gapped (non-prelim): 3
length of query: 617
length of database: 217,277,237
effective HSP length: 19
effective length of query: 598
effective length of database: 210,514,662
effective search space: 125887767876
effective search space used: 125887767876
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)