BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419137.2.4
         (591 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO367065.1|CO367065  RTK1_32_A02.b1_A029 Roots minus pota...    40   0.099
gb|DR010908.1|DR010908  HEAT1_2_C06.b1_A029 Root at 37 C for...    40   0.099
gb|DR091776.1|DR091776  RTAL1_23_G12.g1_A029 Roots plus adde...    40   0.099

>gb|CO367065.1|CO367065 RTK1_32_A02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
           RTK1_32_A02_A029 3', mRNA sequence
          Length = 836

 Score = 40.1 bits (20), Expect = 0.099
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 gccgccgcctccaccactgc 484
           ||||||||||||||||||||
Sbjct: 671 gccgccgcctccaccactgc 652



>gb|DR010908.1|DR010908 HEAT1_2_C06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
           HEAT1_2_C06_A029 3', mRNA sequence
          Length = 744

 Score = 40.1 bits (20), Expect = 0.099
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 gccgccgcctccaccactgc 484
           ||||||||||||||||||||
Sbjct: 570 gccgccgcctccaccactgc 551



>gb|DR091776.1|DR091776 RTAL1_23_G12.g1_A029 Roots plus added aluminum Pinus taeda cDNA
           clone RTAL1_23_G12_A029 5', mRNA sequence
          Length = 832

 Score = 40.1 bits (20), Expect = 0.099
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 465 gccgccgcctccaccactgc 484
           ||||||||||||||||||||
Sbjct: 150 gccgccgcctccaccactgc 169



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,602
Number of Sequences: 355925
Number of extensions: 51602
Number of successful extensions: 12379
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12373
Number of HSP's gapped (non-prelim): 6
length of query: 591
length of database: 217,277,237
effective HSP length: 19
effective length of query: 572
effective length of database: 210,514,662
effective search space: 120414386664
effective search space used: 120414386664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)