BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.2
(1617 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR691945.1|DR691945 EST1082032 Normalized pine embryo li... 129 4e-028
gb|DT636879.1|DT636879 EST1151810 Normalized pine embryo li... 129 4e-028
dbj|BD273093.1| Materials and methods for the modification ... 129 4e-028
gb|CX713935.1|CX713935 RTPQ1_15_D05.b1_A032 Roots treated w... 121 9e-026
gb|DR693591.1|DR693591 EST1083680 Normalized pine embryo li... 121 9e-026
gb|DR686435.1|DR686435 EST1076513 Normalized pine embryo li... 113 2e-023
gb|BQ698117.1|BQ698117 NXPV_064_G03_F NXPV (Nsf Xylem Plani... 101 9e-020
gb|BQ701207.1|BQ701207 NXSI_023_G09_F NXSI (Nsf Xylem Side ... 101 9e-020
gb|DT633502.1|DT633502 EST1148433 Normalized pine embryo li... 100 3e-019
gb|CX645971.1|CX645971 COLD1_6_A08.g1_A029 Root cold Pinus ... 96 5e-018
gb|BQ699341.1|BQ699341 NXRV126_E04_F NXRV (Nsf Xylem Root w... 74 2e-011
gb|DR098181.1|DR098181 STRR1_39_D08.g1_A033 Stem Response R... 72 8e-011
gb|DR118894.1|DR118894 RTMG1_19_G09.g1_A029 Roots minus mag... 72 8e-011
gb|BQ700491.1|BQ700491 NXRV107_D05_F NXRV (Nsf Xylem Root w... 66 5e-009
gb|CF672887.1|CF672887 RTCNT1_74_D06.g1_A029 Root control P... 44 0.018
gb|DR080387.1|DR080387 RTFEPL1_22_G06.b1_A029 Roots plus ad... 40 0.28
gb|DR080460.1|DR080460 RTFEPL1_22_G06.g1_A029 Roots plus ad... 40 0.28
gb|DR110130.1|DR110130 RTS1_9_C04.b1_A029 Roots minus sulfu... 40 0.28
gb|DR110629.1|DR110629 RTS1_12_B03.b1_A029 Roots minus sulf... 40 0.28
>gb|DR691945.1|DR691945 EST1082032 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADG12 3' end, mRNA sequence
Length = 832
Score = 129 bits (65), Expect = 4e-028
Identities = 182/221 (82%)
Strand = Plus / Minus
Query: 1056 gcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggt 1115
||||||||||||||||| || || || ||||| || ||||| || ||||||||| | ||
Sbjct: 343 gcaatttctctcagtggacctccaatcccacatccaacatccaataccttcattgcaggc 284
Query: 1116 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggat 1175
|| |||| ||| || || ||||||||||| ||||| ||||| || ||||| || | ||
Sbjct: 283 tttaaacaaagctgaagagcaagaaaatgttcatggcgctttatactttctcggagggtc 224
Query: 1176 tctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagcta 1235
|| || ||||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 223 tcccctttccatctgtgagcaaaatgaaaagactccccccatccatactcatagaaacta 164
Query: 1236 gtggcaagatcatagtatttattaaccatatcagtatagtt 1276
|| || ||||||||||||||||| ||||| || ||||||||
Sbjct: 163 gtcgccagatcatagtatttatttaccatgtctgtatagtt 123
Score = 87.7 bits (44), Expect = 1e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 839 tatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaac 898
|||||| |||||||| ||||||| ||| ||||||||||| || |||||||| | |||||
Sbjct: 560 tatctctttgtagcagccaactgcatctggtgcatgacaggtagcctcaattgtataaac 501
Query: 899 agcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaatcaca 958
||||||||||| | || ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 500 tgcatcaaaagtatcgttggagaaaggcatcttcatgaagtctcccttgacaaaatcaca 441
>gb|DT636879.1|DT636879 EST1151810 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX11 3' end, mRNA sequence
Length = 829
Score = 129 bits (65), Expect = 4e-028
Identities = 182/221 (82%)
Strand = Plus / Minus
Query: 1056 gcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggt 1115
||||||||||||||||| || || || ||||| || ||||| || ||||||||| | ||
Sbjct: 351 gcaatttctctcagtggacctccaatcccacatccaacatccaataccttcattgcaggc 292
Query: 1116 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggat 1175
|| |||| ||| || || ||||||||||| ||||| ||||| || ||||| || | ||
Sbjct: 291 tttaaacaaagctgaagagcaagaaaatgttcatggcgctttatactttctcggagggtc 232
Query: 1176 tctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagcta 1235
|| || ||||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 231 tcccctttccatctgtgagcaaaatgaaaagactccccccatccatactcatagaaacta 172
Query: 1236 gtggcaagatcatagtatttattaaccatatcagtatagtt 1276
|| || ||||||||||||||||| ||||| || ||||||||
Sbjct: 171 gtcgccagatcatagtatttatttaccatgtctgtatagtt 131
Score = 87.7 bits (44), Expect = 1e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 839 tatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaac 898
|||||| |||||||| ||||||| ||| ||||||||||| || |||||||| | |||||
Sbjct: 568 tatctctttgtagcagccaactgcatctggtgcatgacaggtagcctcaattgtataaac 509
Query: 899 agcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaatcaca 958
||||||||||| | || ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 508 tgcatcaaaagtatcgttggagaaaggcatcttcatgaagtctcccttgacaaaatcaca 449
>dbj|BD273093.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 582
Score = 129 bits (65), Expect = 4e-028
Identities = 182/221 (82%)
Strand = Plus / Minus
Query: 1056 gcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggt 1115
||||||||||||||||| || || || ||||| || ||||| || ||||||||| | ||
Sbjct: 521 gcaatttctctcagtggacctccaatcccacatccaacatccaataccttcattgcaggc 462
Query: 1116 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggat 1175
|| |||| ||| || || ||||||||||| ||||| ||||| || ||||| || | ||
Sbjct: 461 tttaaacaaaggtgaagagcaagaaaatgttcatggcgctttatactttctcggagggtc 402
Query: 1176 tctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagcta 1235
|| || ||||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 401 tcccctttccatctgtgagcaaaatgaaaagactccccccatccatactcatagaaacta 342
Query: 1236 gtggcaagatcatagtatttattaaccatatcagtatagtt 1276
|| || ||||||||||||||||| ||||| || ||||||||
Sbjct: 341 gtcgccagatcatagtatttatttaccatgtctgtatagtt 301
>gb|CX713935.1|CX713935 RTPQ1_15_D05.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_15_D05_A032 3', mRNA sequence
Length = 800
Score = 121 bits (61), Expect = 9e-026
Identities = 181/221 (81%)
Strand = Plus / Minus
Query: 1056 gcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggt 1115
||||||||||||||||| || || || ||||| || ||||| || ||||||||| | ||
Sbjct: 771 gcaatttctctcagtggacctccaatcccacatccaacatccaataccttcattgcaggc 712
Query: 1116 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggat 1175
|| |||| ||| || || ||||||||||| ||||| ||||| || ||||| || | |
Sbjct: 711 tttaaacaaaggtgaagagcaagaaaatgttcatggcgctttatactttctcggagcgtc 652
Query: 1176 tctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagcta 1235
|| || ||||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 651 tcccctttccatctgtgagcaaaatgaaaagactccccccatccatactcatagaaacta 592
Query: 1236 gtggcaagatcatagtatttattaaccatatcagtatagtt 1276
|| || ||||||||||||||||| ||||| || ||||||||
Sbjct: 591 gtcgccagatcatagtatttatttaccatgtctgtatagtt 551
>gb|DR693591.1|DR693591 EST1083680 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE147 3' end, mRNA sequence
Length = 733
Score = 121 bits (61), Expect = 9e-026
Identities = 181/221 (81%)
Strand = Plus / Minus
Query: 1056 gcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggt 1115
||||||||||||||||| || || || ||||| || ||||| || ||||||||| | ||
Sbjct: 284 gcaatttctctcagtggacctccaatcccacatccaacatccaataccttcattgcaggc 225
Query: 1116 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggat 1175
|| |||| ||| || || ||||||||||| ||||| ||||| || ||||| || | |
Sbjct: 224 tttaaacaaaggtgaagagcaagaaaatgttcatggcgctttatactttctcggagcgtc 165
Query: 1176 tctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagcta 1235
|| || ||||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 164 tcccctttccatctgtgagcaaaatgaaaagactccccccatccatactcatagaaacta 105
Query: 1236 gtggcaagatcatagtatttattaaccatatcagtatagtt 1276
|| || ||||||||||||||||| ||||| || ||||||||
Sbjct: 104 gtcgccagatcatagtatttatttaccatgtctgtatagtt 64
Score = 87.7 bits (44), Expect = 1e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 839 tatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaac 898
|||||| |||||||| ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 501 tatctctttgtagcagccaactgcatctggtgcatgacaggtagcctcaattgcataaac 442
Query: 899 agcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaatcaca 958
||||||||||| | || ||| ||||||||||||||||| || |||||||||||||
Sbjct: 441 tgcatcaaaagtatcgttggagaaaggcatcttcatgaagtctcccatgacaaaatcaca 382
>gb|DR686435.1|DR686435 EST1076513 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABG04 3' end, mRNA sequence
Length = 808
Score = 113 bits (57), Expect = 2e-023
Identities = 180/221 (81%)
Strand = Plus / Minus
Query: 1056 gcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggt 1115
|||||||| |||||||| || || || ||||| || ||||| || ||||||||| | ||
Sbjct: 589 gcaatttccctcagtggacctccaatcccacatccaacatccaataccttcattgcaggc 530
Query: 1116 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggat 1175
|| |||| ||| || || ||||||||||| ||||| ||||| || ||||| || | ||
Sbjct: 529 tttaaacaaagctgaagagcaagaaaatgttcatggcgctttatactttctcggagggtc 470
Query: 1176 tctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagcta 1235
|| || |||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 469 tcccctctccatctgtgagcaaaatgaaaagactccccccatccatactcatagaaacta 410
Query: 1236 gtggcaagatcatagtatttattaaccatatcagtatagtt 1276
|| || ||||||||||||||||| ||||| || ||||||||
Sbjct: 409 gtcgccagatcatagtatttatttaccatgtctgtatagtt 369
Score = 95.6 bits (48), Expect = 5e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 839 tatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaac 898
|||||| |||||||| ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 806 tatctctttgtagcagccaactgcatctggtgcatgacaggtagcctcaattgcataaac 747
Query: 899 agcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaatcaca 958
||||||||||| | || ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 746 tgcatcaaaagtatcgttggagaaaggcatcttcatgaagtctcccttgacaaaatcaca 687
>gb|BQ698117.1|BQ698117 NXPV_064_G03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_064_G03 5' similar to Arabidopsis
thaliana sequence At5g13710 24-sterol C-methyltransferase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 518
Score = 101 bits (51), Expect = 9e-020
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 1134 gcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtga 1193
||||||||||| ||||| ||||| || ||||| || | || || || ||||||||||||
Sbjct: 430 gcaagaaaatgttcatggcgctttatactttctcggagggtctcccctttccatctgtga 371
Query: 1194 gcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtat 1253
||||| || || || || ||||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 370 gcaaaatgaaaagactccccccatccatactcatagaaactagtcgccagatcatagtat 311
Query: 1254 ttattaaccatatcagtatagtt 1276
||||| ||||| || ||||||||
Sbjct: 310 ttatttaccatgtctgtatagtt 288
>gb|BQ701207.1|BQ701207 NXSI_023_G09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_023_G09 5' similar to Arabidopsis thaliana
sequence At5g13710 24-sterol C-methyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 493
Score = 101 bits (51), Expect = 9e-020
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 1134 gcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtga 1193
||||||||||| ||||| ||||| || ||||| || | || || || ||||||||||||
Sbjct: 474 gcaagaaaatgttcatggcgctttatactttctcggagggtctcccctttccatctgtga 415
Query: 1194 gcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatagtat 1253
||||| || || || || ||||| |||||||||||||| ||||| || ||||||||||||
Sbjct: 414 gcaaaatgaaaagactccccccatccatactcatagaaactagtcgccagatcatagtat 355
Query: 1254 ttattaaccatatcagtatagtt 1276
||||| ||||| || ||||||||
Sbjct: 354 ttatttaccatgtctgtatagtt 332
>gb|DT633502.1|DT633502 EST1148433 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFV57 3' end, mRNA sequence
Length = 857
Score = 99.6 bits (50), Expect = 3e-019
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 1083 ccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgcagggcaagaaaa 1142
||||| || ||||| || ||||||||| | || || |||| ||| || || |||||||||
Sbjct: 570 ccacatccaacatccaataccttcattgcaggctttaaacaaagctgaagagcaagaaaa 511
Query: 1143 tgctcatgtcgcttgatgctttcacgtaaggattctccattccatctgtgagcaaagtgg 1202
|| ||||| ||||| || ||||| || | || || || |||||||||||||||| ||
Sbjct: 510 tgttcatggcgctttatactttctcggagggtctcccctctccatctgtgagcaaaatga 451
Query: 1203 aaggattcaccccaaccatactcatagaagctagtggcaagatcatagtatttattaacc 1262
|| || || ||||| |||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct: 450 aaagactccccccatccatactcatagaaactagtcgccagatcatagtatttatttacc 391
Query: 1263 atatcagtatagtt 1276
|| || ||||||||
Sbjct: 390 atgtctgtatagtt 377
Score = 95.6 bits (48), Expect = 5e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 839 tatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaac 898
|||||| |||||||| ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 815 tatctctttgtagcagccaactgcatctggtgcatgacaggtagcctcaattgcataaac 756
Query: 899 agcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaatcaca 958
||||||||||| | || ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 755 tgcatcaaaagtatcgttggagaaaggcatcttcatgaagtctcccttgacaaaatcaca 696
>gb|CX645971.1|CX645971 COLD1_6_A08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_A08_A029 5', mRNA sequence
Length = 691
Score = 95.6 bits (48), Expect = 5e-018
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 839 tatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaac 898
|||||| |||||||| ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 319 tatctctttgtagcagccaactgcatctggtgcatgacaggtagcctcaattgcataaac 260
Query: 899 agcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgacaaaatcaca 958
||||||||||| | || ||| ||||||||||||||||| ||||||||||||||||
Sbjct: 259 tgcatcaaaagtatcgttggagaaaggcatcttcatgaagtctcccttgacaaaatcaca 200
Score = 58.0 bits (29), Expect = 1e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1056 gcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggt 1115
||||||||||||||||| || || || ||||| || ||||| || ||||||||| | ||
Sbjct: 102 gcaatttctctcagtggacctccaatcccacatccaacatccaataccttcattgcaggc 43
Query: 1116 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgctt 1156
|| |||| ||| || || ||||||||||| ||||| |||||
Sbjct: 42 tttaaacaaagctgaagagcaagaaaatgttcatggcgctt 2
>gb|BQ699341.1|BQ699341 NXRV126_E04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV126_E04 5' similar to Arabidopsis thaliana
sequence At5g13710 24-sterol C-methyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 363
Score = 73.8 bits (37), Expect = 2e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 1212 ccccaaccatactcatagaagctagtggcaagatcatagtatttattaaccatatcagta 1271
||||| |||||||||||||| ||||| || ||||||||||||||||| ||||| || |||
Sbjct: 341 ccccatccatactcatagaaactagtcgccagatcatagtatttatttaccatgtctgta 282
Query: 1272 tagtt 1276
|||||
Sbjct: 281 tagtt 277
>gb|DR098181.1|DR098181 STRR1_39_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D08_A033 5', mRNA sequence
Length = 741
Score = 71.9 bits (36), Expect = 8e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 839 tatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaac 898
|||||| |||||||| ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 87 tatctctttgtagcagccaactgcatctggtgcatgacaggtagcctcaattgcataaac 28
Query: 899 agcatcaaaagt 910
|||||||||||
Sbjct: 27 tgcatcaaaagt 16
>gb|DR118894.1|DR118894 RTMG1_19_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_19_G09_A029 5', mRNA sequence
Length = 578
Score = 71.9 bits (36), Expect = 8e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 839 tatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatggcgtaaac 898
|||||| |||||||| ||||||| ||| ||||||||||| || |||||||| || |||||
Sbjct: 123 tatctctttgtagcagccaactgcatctggtgcatgacaggtagcctcaattgcataaac 64
Query: 899 agcatcaaaagt 910
|||||||||||
Sbjct: 63 tgcatcaaaagt 52
>gb|BQ700491.1|BQ700491 NXRV107_D05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV107_D05 5' similar to Arabidopsis thaliana
sequence At5g13710 24-sterol C-methyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 421
Score = 65.9 bits (33), Expect = 5e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 1212 ccccaaccatactcatagaagctagtggcaagatcatagtatttattaaccatatcagta 1271
||||| ||||| |||||||| ||||| || ||||||||||||||||| ||||| || |||
Sbjct: 341 ccccatccatagtcatagaaactagtcgccagatcatagtatttatttaccatgtctgta 282
Query: 1272 tagtt 1276
|||||
Sbjct: 281 tagtt 277
>gb|CF672887.1|CF672887 RTCNT1_74_D06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D06_A029 5', mRNA sequence
Length = 740
Score = 44.1 bits (22), Expect = 0.018
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 1187 tctgtgagcaaagtggaaggattcaccccaaccatactcatagaag 1232
|||| ||||||||||||| |||| ||||||||| || || ||||||
Sbjct: 248 tctgggagcaaagtggaaagattgaccccaaccgtattcgtagaag 203
>gb|DR080387.1|DR080387 RTFEPL1_22_G06.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_22_G06_A029 3', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1554 ctcgcgctcggcggtggtgg 1573
||||||||||||||||||||
Sbjct: 134 ctcgcgctcggcggtggtgg 115
>gb|DR080460.1|DR080460 RTFEPL1_22_G06.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_22_G06_A029 5', mRNA sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1554 ctcgcgctcggcggtggtgg 1573
||||||||||||||||||||
Sbjct: 339 ctcgcgctcggcggtggtgg 320
>gb|DR110130.1|DR110130 RTS1_9_C04.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_9_C04_A029 3', mRNA sequence
Length = 839
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1554 ctcgcgctcggcggtggtgg 1573
||||||||||||||||||||
Sbjct: 451 ctcgcgctcggcggtggtgg 470
>gb|DR110629.1|DR110629 RTS1_12_B03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_B03_A029 3', mRNA sequence
Length = 840
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1554 ctcgcgctcggcggtggtgg 1573
||||||||||||||||||||
Sbjct: 452 ctcgcgctcggcggtggtgg 471
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 179,530
Number of Sequences: 355925
Number of extensions: 179530
Number of successful extensions: 47489
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47437
Number of HSP's gapped (non-prelim): 37
length of query: 1617
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1597
effective length of database: 210,158,737
effective search space: 335623502989
effective search space used: 335623502989
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)