BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405110.2.1
(945 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW010513.1|AW010513 ST07F08 Pine TriplEx shoot tip libra... 123 1e-026
gb|BQ291283.1|BQ291283 NXRV058_C03_F NXRV (Nsf Xylem Root w... 123 1e-026
gb|CF475521.1|CF475521 RTWW2_12_A05.g1_A021 Well-watered lo... 123 1e-026
gb|CO168671.1|CO168671 NDL1_1_E09.g1_A029 Needles control P... 123 1e-026
gb|CO367074.1|CO367074 RTK1_32_B01.b1_A029 Roots minus pota... 123 1e-026
gb|CO367146.1|CO367146 RTK1_32_B01.g1_A029 Roots minus pota... 123 1e-026
gb|CV031451.1|CV031451 RTNACL1_1_D12.g1_A029 Roots plus add... 123 1e-026
gb|CX646756.1|CX646756 COLD1_11_G06.b1_A029 Root cold Pinus... 123 1e-026
gb|CX646836.1|CX646836 COLD1_11_G06.g1_A029 Root cold Pinus... 123 1e-026
gb|CX647155.1|CX647155 COLD1_14_A10.b1_A029 Root cold Pinus... 123 1e-026
gb|CX649419.1|CX649419 COLD1_35_E01.b1_A029 Root cold Pinus... 123 1e-026
gb|DR012197.1|DR012197 HEAT1_10_H05.g1_A029 Root at 37 C fo... 123 1e-026
gb|DR013986.1|DR013986 HEAT1_22_F01.g1_A029 Root at 37 C fo... 123 1e-026
gb|DR015681.1|DR015681 STRS1_5_B03.b1_A034 Shoot tip pitch ... 123 1e-026
gb|DR015764.1|DR015764 STRS1_5_B03.g1_A034 Shoot tip pitch ... 123 1e-026
gb|DR020799.1|DR020799 STRS1_39_H04.b1_A034 Shoot tip pitch... 123 1e-026
gb|DR020877.1|DR020877 STRS1_39_H04.g1_A034 Shoot tip pitch... 123 1e-026
gb|DR020949.1|DR020949 STRS1_40_H03.b1_A034 Shoot tip pitch... 123 1e-026
gb|DR021024.1|DR021024 STRS1_40_H03.g1_A034 Shoot tip pitch... 123 1e-026
gb|DR055246.1|DR055246 RTCA1_22_B03.g2_A029 Roots minus cal... 123 1e-026
gb|DR079116.1|DR079116 RTFEPL1_9_E04.b1_A029 Roots plus add... 123 1e-026
gb|DR079191.1|DR079191 RTFEPL1_9_E04.g1_A029 Roots plus add... 123 1e-026
gb|DR092074.1|DR092074 RTAL1_26_D03.b1_A029 Roots plus adde... 123 1e-026
gb|DR092127.1|DR092127 RTAL1_26_D03.g1_A029 Roots plus adde... 123 1e-026
gb|DR093433.1|DR093433 STRR1_8_F06.b1_A033 Stem Response Re... 123 1e-026
gb|DR093522.1|DR093522 STRR1_8_F06.g1_A033 Stem Response Re... 123 1e-026
gb|DR166463.1|DR166463 RTPHOS1_12_D07.b2_A029 Roots minus p... 123 1e-026
gb|DR387380.1|DR387380 RTHG1_21_H03.b1_A029 Roots plus adde... 123 1e-026
gb|DR387454.1|DR387454 RTHG1_21_H03.g2_A029 Roots plus adde... 123 1e-026
gb|DR745719.1|DR745719 RTCU1_31_G11.g1_A029 Roots plus adde... 123 1e-026
gb|BX250498.1|BX250498 BX250498 Pinus pinaster differenciat... 121 5e-026
gb|BI202820.1|BI202820 NXPV_090_H09_F NXPV (Nsf Xylem Plani... 115 3e-024
gb|CF664860.1|CF664860 RTCNT1_12_H09.b1_A029 Root control P... 115 3e-024
gb|CO198877.1|CO198877 GEO1_17_F01.b1_A029 Root gravitropis... 115 3e-024
gb|DR013152.1|DR013152 HEAT1_17_H01.b1_A029 Root at 37 C fo... 115 3e-024
gb|DR089973.1|DR089973 RTAL1_12_A09.b1_A029 Roots plus adde... 115 3e-024
gb|DR090057.1|DR090057 RTAL1_12_A09.g1_A029 Roots plus adde... 115 3e-024
gb|BQ634298.1|BQ634298 NXRV067_B10_F NXRV (Nsf Xylem Root w... 111 5e-023
gb|DR055171.1|DR055171 RTCA1_22_B03.b1_A029 Roots minus cal... 111 5e-023
gb|AA556693.1|AA556693 548 Loblolly pine CA Pinus taeda cDN... 109 2e-022
gb|CF664944.1|CF664944 RTCNT1_12_H09.g1_A029 Root control P... 109 2e-022
gb|AW064892.1|AW064892 ST37B01 Pine TriplEx shoot tip libra... 103 1e-020
gb|AW290447.1|AW290447 NXNV027A06F Nsf Xylem Normal wood Ve... 103 1e-020
gb|BQ697528.1|BQ697528 NXPV_054_E08_F NXPV (Nsf Xylem Plani... 103 1e-020
gb|CD027107.1|CD027107 NXNV027A06 Nsf Xylem Normal wood Ver... 103 1e-020
gb|DR013210.1|DR013210 HEAT1_17_H01.g1_A029 Root at 37 C fo... 103 1e-020
gb|BF610320.1|BF610320 NXSI_057_G11_F NXSI (Nsf Xylem Side ... 92 5e-017
gb|BE123688.1|BE123688 NXNV_151_E10_F Nsf Xylem Normal wood... 88 8e-016
gb|BE644064.1|BE644064 NXCI_054_B05_F NXCI (Nsf Xylem Compr... 88 8e-016
gb|AW981706.1|AW981706 PC15G03 Pine TriplEx pollen cone lib... 84 1e-014
gb|AW011414.1|AW011414 ST20E04 Pine TriplEx shoot tip libra... 76 3e-012
gb|BF220951.1|BF220951 NXCI_155_G07_F NXCI (Nsf Xylem Compr... 68 7e-010
gb|CF475467.1|CF475467 RTWW2_12_A05.b1_A021 Well-watered lo... 54 1e-005
gb|CF478771.1|CF478771 RTWW3_15_H05.b1_A022 Well-watered lo... 54 1e-005
gb|DR013900.1|DR013900 HEAT1_22_F01.b1_A029 Root at 37 C fo... 54 1e-005
>gb|AW010513.1|AW010513 ST07F08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST07F08, mRNA sequence
Length = 952
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 504 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 445
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 444 ctggtgctgaaagcaaggcttgcaaagaaagtaaggctgtcttcaatgtgagagctgggc 385
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 384 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 325
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 324 gccagacttt 315
>gb|BQ291283.1|BQ291283 NXRV058_C03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV058_C03 5' similar to Arabidopsis thaliana
sequence At5g50870 ubiquitin-conjugating enzyme-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 575
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 451 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 392
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 391 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 332
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 331 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 272
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 271 gccagacttt 262
>gb|CF475521.1|CF475521 RTWW2_12_A05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_A05_A021 5', mRNA sequence
Length = 732
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 502 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 443
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 442 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 383
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 382 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 323
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 322 gccagacttt 313
>gb|CO168671.1|CO168671 NDL1_1_E09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_1_E09_A029 5', mRNA sequence
Length = 762
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 518 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 459
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 458 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 399
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 398 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 339
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 338 gccagacttt 329
>gb|CO367074.1|CO367074 RTK1_32_B01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_B01_A029 3', mRNA sequence
Length = 800
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 327 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 268
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 267 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 208
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 207 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 148
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 147 gccagacttt 138
>gb|CO367146.1|CO367146 RTK1_32_B01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_B01_A029 5', mRNA sequence
Length = 725
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 459 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 400
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 399 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 340
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 339 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 280
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 279 gccagacttt 270
>gb|CV031451.1|CV031451 RTNACL1_1_D12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_D12_A029 5', mRNA sequence
Length = 749
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 545 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 486
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 485 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 426
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 425 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 366
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 365 gccagacttt 356
>gb|CX646756.1|CX646756 COLD1_11_G06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_G06_A029 3', mRNA sequence
Length = 875
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 255 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 196
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 195 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 136
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 135 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 76
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 75 gccagacttt 66
>gb|CX646836.1|CX646836 COLD1_11_G06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_G06_A029 5', mRNA sequence
Length = 866
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 532 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 473
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 472 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 413
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 412 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 353
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 352 gccagacttt 343
>gb|CX647155.1|CX647155 COLD1_14_A10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_14_A10_A029 3', mRNA sequence
Length = 735
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 281 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 222
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 221 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 162
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 161 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 102
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 101 gccagacttt 92
>gb|CX649419.1|CX649419 COLD1_35_E01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_E01_A029 3', mRNA sequence
Length = 744
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 282 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 223
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 222 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 163
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 162 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 103
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 102 gccagacttt 93
>gb|DR012197.1|DR012197 HEAT1_10_H05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_10_H05_A029 5', mRNA sequence
Length = 521
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 333 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 274
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 273 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 214
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 213 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 154
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 153 gccagacttt 144
>gb|DR013986.1|DR013986 HEAT1_22_F01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_F01_A029 5', mRNA sequence
Length = 831
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 508 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 449
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 448 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 389
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 388 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 329
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 328 gccagacttt 319
>gb|DR015681.1|DR015681 STRS1_5_B03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_B03_A034 3', mRNA sequence
Length = 868
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 415 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 356
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 355 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 296
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 295 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 236
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 235 gccagacttt 226
>gb|DR015764.1|DR015764 STRS1_5_B03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_B03_A034 5', mRNA sequence
Length = 759
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 411 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 352
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 351 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 292
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 291 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 232
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 231 gccagacttt 222
>gb|DR020799.1|DR020799 STRS1_39_H04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_H04_A034 3', mRNA sequence
Length = 853
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 395 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 336
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 335 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 276
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 275 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 216
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 215 gccagacttt 206
>gb|DR020877.1|DR020877 STRS1_39_H04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_H04_A034 5', mRNA sequence
Length = 601
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 505 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 446
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 445 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 386
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 385 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 326
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 325 gccagacttt 316
>gb|DR020949.1|DR020949 STRS1_40_H03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_H03_A034 3', mRNA sequence
Length = 781
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 330 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 271
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 270 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 211
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 210 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 151
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 150 gccagacttt 141
>gb|DR021024.1|DR021024 STRS1_40_H03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_H03_A034 5', mRNA sequence
Length = 582
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 487 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 428
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 427 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 368
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 367 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 308
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 307 gccagacttt 298
>gb|DR055246.1|DR055246 RTCA1_22_B03.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_22_B03_A029 5', mRNA sequence
Length = 555
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 490 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 431
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 430 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 371
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 370 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 311
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 310 gccagacttt 301
>gb|DR079116.1|DR079116 RTFEPL1_9_E04.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_E04_A029 3', mRNA sequence
Length = 804
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 330 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 271
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 270 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 211
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 210 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 151
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 150 gccagacttt 141
>gb|DR079191.1|DR079191 RTFEPL1_9_E04.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_E04_A029 5', mRNA sequence
Length = 830
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 542 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 483
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 482 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 423
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 422 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 363
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 362 gccagacttt 353
>gb|DR092074.1|DR092074 RTAL1_26_D03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_26_D03_A029 3', mRNA sequence
Length = 681
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 226 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 167
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 166 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 107
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 106 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 47
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 46 gccagacttt 37
>gb|DR092127.1|DR092127 RTAL1_26_D03.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_26_D03_A029 5', mRNA sequence
Length = 565
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 467 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 408
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 407 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 348
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 347 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 288
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 287 gccagacttt 278
>gb|DR093433.1|DR093433 STRR1_8_F06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_8_F06_A033 3', mRNA sequence
Length = 764
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 226 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 167
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 166 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 107
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 106 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 47
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 46 gccagacttt 37
>gb|DR093522.1|DR093522 STRR1_8_F06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_8_F06_A033 5', mRNA sequence
Length = 858
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 504 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 445
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 444 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 385
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 384 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 325
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 324 gccagacttt 315
>gb|DR166463.1|DR166463 RTPHOS1_12_D07.b2_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_12_D07_A029 3', mRNA sequence
Length = 712
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Plus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 200 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 259
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 260 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 319
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 320 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 379
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 380 gccagacttt 389
>gb|DR387380.1|DR387380 RTHG1_21_H03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_21_H03_A029 3', mRNA sequence
Length = 701
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 247 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 188
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 187 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 128
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 127 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 68
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 67 gccagacttt 58
>gb|DR387454.1|DR387454 RTHG1_21_H03.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_21_H03_A029 5', mRNA sequence
Length = 779
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 508 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 449
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 448 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 389
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 388 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 329
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 328 gccagacttt 319
>gb|DR745719.1|DR745719 RTCU1_31_G11.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_31_G11_A029 5', mRNA sequence
Length = 696
Score = 123 bits (62), Expect = 1e-026
Identities = 158/190 (83%)
Strand = Plus / Plus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 503 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 562
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 563 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 622
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 623 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 682
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 683 gccagacttt 692
>gb|BX250498.1|BX250498 BX250498 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP037G03, mRNA sequence
Length = 587
Score = 121 bits (61), Expect = 5e-026
Identities = 145/173 (83%)
Strand = Plus / Minus
Query: 464 aggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcaga 523
||||||||||| || || |||||||||||||||||||| ||| | || | |||||||
Sbjct: 207 aggtactgttgtgccaccacagcatcctgaggatcatccggttctggtgctgaaagcaag 148
Query: 524 gcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcaga 583
||||| | ||||| | || |||||||| || || ||||||||||||||||||||||||
Sbjct: 147 gcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggctccactgatctttcaga 88
Query: 584 atgtccaagcaaattgctccattttggctgctgatgttagggtgccatacttt 636
|| |||||||| ||||| |||||||| |||||||| ||||| ||||| |||||
Sbjct: 87 atatccaagcatattgcaccattttgactgctgatattaggatgccagacttt 35
>gb|BI202820.1|BI202820 NXPV_090_H09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_090_H09 5' similar to Arabidopsis
thaliana sequence At5g50870 ubiquitin-conjugating
enzyme-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 520
Score = 115 bits (58), Expect = 3e-024
Identities = 156/190 (82%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||| ||||||||||| |||
Sbjct: 462 atgttgcatagtctctaaggtactgttgtgccacnacagcatcntgaggatcatccggtt 403
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 402 ctggtnntgaaagcaaggcttgcaaagaaagtaaggctgtcttcaatgtgagagctgggc 343
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 342 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 283
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 282 gccagacttt 273
>gb|CF664860.1|CF664860 RTCNT1_12_H09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_H09_A029 3', mRNA sequence
Length = 686
Score = 115 bits (58), Expect = 3e-024
Identities = 157/190 (82%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 226 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 167
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 166 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 107
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||| ||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 106 tccactgatctttcataatatccaagcatattgcaccattttgactgctgatattaggat 47
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 46 gccagacttt 37
>gb|CO198877.1|CO198877 GEO1_17_F01.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_17_F01_A029 3', mRNA sequence
Length = 635
Score = 115 bits (58), Expect = 3e-024
Identities = 148/178 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 181 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 122
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 121 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 62
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagg 624
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 61 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattagg 4
>gb|DR013152.1|DR013152 HEAT1_17_H01.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_H01_A029 3', mRNA sequence
Length = 756
Score = 115 bits (58), Expect = 3e-024
Identities = 157/190 (82%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 290 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 231
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | |||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 230 ctggtgctaaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 171
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 170 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 111
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 110 gccagacttt 101
>gb|DR089973.1|DR089973 RTAL1_12_A09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_A09_A029 3', mRNA sequence
Length = 778
Score = 115 bits (58), Expect = 3e-024
Identities = 157/190 (82%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || | |||||||||||||||||||| |||
Sbjct: 223 atgttgcatagtctctaaggtactgttgtgccgccacagcatcctgaggatcatccggtt 164
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 163 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 104
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 103 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 44
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 43 gccagacttt 34
>gb|DR090057.1|DR090057 RTAL1_12_A09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_A09_A029 5', mRNA sequence
Length = 689
Score = 115 bits (58), Expect = 3e-024
Identities = 157/190 (82%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || | |||||||||||||||||||| |||
Sbjct: 508 atgttgcatagtctctaaggtactgttgtgccgccacagcatcctgaggatcatccggtt 449
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 448 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 389
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
||||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 388 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgatattaggat 329
Query: 627 gccatacttt 636
|||| |||||
Sbjct: 328 gccagacttt 319
>gb|BQ634298.1|BQ634298 NXRV067_B10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV067_B10 5' similar to Arabidopsis thaliana
sequence At5g50870 ubiquitin-conjugating enzyme-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 591
Score = 111 bits (56), Expect = 5e-023
Identities = 140/168 (83%)
Strand = Plus / Minus
Query: 469 ctgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttg 528
|||||| || || |||||||||||||||||||| ||| | || | ||||||| |||||
Sbjct: 429 ctgttgtgccaccacagcatcctgaggatcatccggttctggtgctgaaagcaaggcttg 370
Query: 529 aagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtc 588
| ||||| | || |||||||| || || |||||||||||||||||||||||||| ||
Sbjct: 369 caaagaaagtaaggccgtcttcaatgtgagagctgggctccactgatctttcagaatatc 310
Query: 589 caagcaaattgctccattttggctgctgatgttagggtgccatacttt 636
|||||| ||||| |||||||| |||||||| ||||| ||||| |||||
Sbjct: 309 caagcatattgcaccattttgactgctgatattaggatgccagacttt 262
>gb|DR055171.1|DR055171 RTCA1_22_B03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_22_B03_A029 3', mRNA sequence
Length = 635
Score = 111 bits (56), Expect = 5e-023
Identities = 143/172 (83%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 176 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 117
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 116 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 57
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgat 618
||||||||||||||||||| |||||||| ||||| |||||||| ||||||||
Sbjct: 56 tccactgatctttcagaatatccaagcatattgcaccattttgactgctgat 5
>gb|AA556693.1|AA556693 548 Loblolly pine CA Pinus taeda cDNA clone 1CAB3D, mRNA sequence
Length = 618
Score = 109 bits (55), Expect = 2e-022
Identities = 134/161 (83%)
Strand = Plus / Minus
Query: 464 aggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcaga 523
||||||||||| || || |||||||| ||||||||||| ||| | || | |||||||
Sbjct: 395 aggtactgttgtgccaccacagcatcntgaggatcatccggttctggtgctgaaagcaag 336
Query: 524 gcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactgatctttcaga 583
||||| | ||||| | || |||||||| || || ||||||||||||||||||||||||
Sbjct: 335 gcttgcaaagaaagtaaggccgtcttcaangtgagagctgggctccactgatctttcaga 276
Query: 584 atgtccaagcaaattgctccattttggctgctgatgttagg 624
|| |||||||| ||||| |||||||| |||||||| |||||
Sbjct: 275 atatccaagcatattgcaccattttgactgctgatattagg 235
>gb|CF664944.1|CF664944 RTCNT1_12_H09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_H09_A029 5', mRNA sequence
Length = 731
Score = 109 bits (55), Expect = 2e-022
Identities = 158/191 (82%), Gaps = 1/191 (0%)
Strand = Plus / Minus
Query: 447 atgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtg 506
|||||| |||||| | ||||||||||| || || |||||||||||||||||||| |||
Sbjct: 517 atgttgcatagtctctaaggtactgttgtgccaccacagcatcctgaggatcatccggtt 458
Query: 507 caggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggc 566
| || | ||||||| ||||| | ||||| | || |||||||| || || |||||||
Sbjct: 457 ctggtgctgaaagcaaggcttgcaaagaaagtaaggccgtcttcaatgtgagagctgggc 398
Query: 567 tccactgatctttcagaatgt-ccaagcaaattgctccattttggctgctgatgttaggg 625
||||||||||||||||||| | ||||||| ||||| |||||||| |||||||| |||||
Sbjct: 397 tccactgatctttcagaatatcccaagcatattgcaccattttgactgctgatattagga 338
Query: 626 tgccatacttt 636
||||| |||||
Sbjct: 337 tgccagacttt 327
>gb|AW064892.1|AW064892 ST37B01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST37B01, mRNA sequence
Length = 586
Score = 103 bits (52), Expect = 1e-020
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 545 gtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaattgctcca 604
|||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 455 gtcttcaatgtgagagctgggctccactgatctttcagaatatccaagcatattgcacca 396
Query: 605 ttttggctgctgatgttagggtgccatacttt 636
||||| |||||||| ||||| ||||| |||||
Sbjct: 395 ttttgactgctgatattaggatgccagacttt 364
>gb|AW290447.1|AW290447 NXNV027A06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV027A06 5', mRNA sequence
Length = 370
Score = 103 bits (52), Expect = 1e-020
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 545 gtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaattgctcca 604
|||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 322 gtcttcaatgtgagagctgggctccactgatctttcagaatatccaagcatattgcacca 263
Query: 605 ttttggctgctgatgttagggtgccatacttt 636
||||| |||||||| ||||| ||||| |||||
Sbjct: 262 ttttgactgctgatattaggatgccagacttt 231
>gb|BQ697528.1|BQ697528 NXPV_054_E08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_054_E08 5' similar to Arabidopsis
thaliana sequence At5g50870 ubiquitin-conjugating
enzyme-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 593
Score = 103 bits (52), Expect = 1e-020
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 545 gtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaattgctcca 604
|||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 429 gtcttcaatgtgagagctgggctccactgatctttcagaatatccaagcatattgcacca 370
Query: 605 ttttggctgctgatgttagggtgccatacttt 636
||||| |||||||| ||||| ||||| |||||
Sbjct: 369 ttttgactgctgatattaggatgccagacttt 338
>gb|CD027107.1|CD027107 NXNV027A06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV027A06 5' similar to Arabidopsis thaliana sequence
At5g50870 ubiquitin-conjugating enzyme-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 370
Score = 103 bits (52), Expect = 1e-020
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 545 gtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaattgctcca 604
|||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 322 gtcttcaatgtgagagctgggctccactgatctttcagaatatccaagcatattgcacca 263
Query: 605 ttttggctgctgatgttagggtgccatacttt 636
||||| |||||||| ||||| ||||| |||||
Sbjct: 262 ttttgactgctgatattaggatgccagacttt 231
>gb|DR013210.1|DR013210 HEAT1_17_H01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_H01_A029 5', mRNA sequence
Length = 485
Score = 103 bits (52), Expect = 1e-020
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 545 gtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaattgctcca 604
|||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 239 gtcttcaatgtgagagctgggctccactgatctttcagaatatccaagcatattgcacca 180
Query: 605 ttttggctgctgatgttagggtgccatacttt 636
||||| |||||||| ||||| ||||| |||||
Sbjct: 179 ttttgactgctgatattaggatgccagacttt 148
>gb|BF610320.1|BF610320 NXSI_057_G11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_057_G11 5' similar to Arabidopsis thaliana
sequence At5g50870 ubiquitin-conjugating enzyme-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 468
Score = 91.7 bits (46), Expect = 5e-017
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 545 gtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaattgctcca 604
|||||||| || || ||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct: 310 gtcttcaatgtgagagctgggctccactnntctttcagaatatccaagcatattgcacca 251
Query: 605 ttttggctgctgatgttagggtgccatacttt 636
||||| |||||||| ||||| ||||| |||||
Sbjct: 250 ttttgactgctgatattaggatgccagacttt 219
>gb|BE123688.1|BE123688 NXNV_151_E10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_151_E10 5' similar to Arabidopsis thaliana
sequence At5g50870 ubiquitin-conjugating enzyme-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 360
Score = 87.7 bits (44), Expect = 8e-016
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 560 gctgggctccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatg 619
||| |||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||
Sbjct: 344 gctnggctccactgatctttcagaatatccaagcatattgcnncattttgactgctgata 285
Query: 620 ttagggtgccatacttt 636
||||| ||||| |||||
Sbjct: 284 ttaggatgccagacttt 268
>gb|BE644064.1|BE644064 NXCI_054_B05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_054_B05 5' similar to Arabidopsis
thaliana sequence At5g50870 ubiquitin-conjugating
enzyme-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 472
Score = 87.7 bits (44), Expect = 8e-016
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 560 gctgggctccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatg 619
|||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||
Sbjct: 405 gctgggctccactgatctttcagaatatccaagcatattgcaccattttgactgctgata 346
Query: 620 ttagggtgccatacttt 636
||| ||||| |||||
Sbjct: 345 ttannntgccagacttt 329
>gb|AW981706.1|AW981706 PC15G03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC15G03, mRNA sequence
Length = 595
Score = 83.8 bits (42), Expect = 1e-014
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 567 tccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggt 626
|||||| |||||| ||||| |||||||| |||||||| ||| ||||||||| |||||||
Sbjct: 312 tccacttatctttgagaatatccaagcatattgctccgctttcgctgctgatattagggt 253
Query: 627 gccatactttggtgatgaactgcatcttcggagg 660
|||| ||||| ||||| |||||||| || |||||
Sbjct: 252 gccacactttcgtgataaactgcatttttggagg 219
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,973
Number of Sequences: 355925
Number of extensions: 105973
Number of successful extensions: 28266
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28126
Number of HSP's gapped (non-prelim): 140
length of query: 945
length of database: 217,277,237
effective HSP length: 19
effective length of query: 926
effective length of database: 210,514,662
effective search space: 194936577012
effective search space used: 194936577012
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)