BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405010.2.1
(1644 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX249219.1|BX249219 BX249219 Pinus pinaster differenciat... 145 7e-033
gb|BX253128.1|BX253128 BX253128 Pinus pinaster differenciat... 145 7e-033
gb|BX255602.1|BX255602 BX255602 Pinus pinaster differenciat... 145 7e-033
gb|AW043098.1|AW043098 ST29C11 Pine TriplEx shoot tip libra... 137 2e-030
gb|BG040920.1|BG040920 NXSI_116_F10_F NXSI (Nsf Xylem Side ... 137 2e-030
gb|BG275555.1|BG275555 NXSI_143_B10_F NXSI (Nsf Xylem Side ... 137 2e-030
gb|BQ290700.1|BQ290700 NXRV048_D07_F NXRV (Nsf Xylem Root w... 137 2e-030
gb|BQ655033.1|BQ655033 NXRV089_D07_F NXRV (Nsf Xylem Root w... 137 2e-030
gb|BQ701120.1|BQ701120 NXRV115_H01_F NXRV (Nsf Xylem Root w... 137 2e-030
gb|CF392839.1|CF392839 RTDR3_19_A09.g1_A022 Loblolly pine r... 137 2e-030
gb|CF477713.1|CF477713 RTWW3_9_B12.g1_A022 Well-watered lob... 137 2e-030
gb|CF479822.1|CF479822 RTWW3_12_F01.g1_A022 Well-watered lo... 137 2e-030
gb|CO366380.1|CO366380 RTK1_27_B11.g1_A029 Roots minus pota... 137 2e-030
gb|DR069217.1|DR069217 RTDK1_5_E03.g1_A029 Roots, dark Pinu... 137 2e-030
gb|DR069320.1|DR069320 RTDK1_6_A07.g1_A029 Roots, dark Pinu... 137 2e-030
gb|DR070303.1|DR070303 RTDK1_12_B03.g1_A029 Roots, dark Pin... 137 2e-030
gb|DR078355.1|DR078355 RTFEPL1_3_C11.g1_A029 Roots plus add... 137 2e-030
gb|DR093506.1|DR093506 STRR1_8_E01.g1_A033 Stem Response Re... 137 2e-030
gb|DR096397.1|DR096397 STRR1_27_E10.g1_A033 Stem Response R... 137 2e-030
gb|CX649758.1|CX649758 COLD1_41_G06.b1_A029 Root cold Pinus... 135 6e-030
gb|CX650068.1|CX650068 COLD1_43_G06.b1_A029 Root cold Pinus... 135 6e-030
gb|AW011417.1|AW011417 ST20E07 Pine TriplEx shoot tip libra... 131 1e-028
gb|AW290222.1|AW290222 NXNV015D06F Nsf Xylem Normal wood Ve... 129 4e-028
gb|BE123816.1|BE123816 NXNV_156_G08_F Nsf Xylem Normal wood... 129 4e-028
gb|CD026855.1|CD026855 NXNV015D06 Nsf Xylem Normal wood Ver... 129 4e-028
gb|CF388667.1|CF388667 RTDR2_4_C01.g1_A021 Loblolly pine ro... 101 9e-020
gb|AW290492.1|AW290492 NXNV027E06F Nsf Xylem Normal wood Ve... 88 1e-015
gb|CD027150.1|CD027150 NXNV027E06 Nsf Xylem Normal wood Ver... 88 1e-015
gb|DN609044.1|DN609044 EST962094 Subtracted pine embryo lib... 86 5e-015
gb|DT629726.1|DT629726 EST1156296 Subtracted pine embryo li... 86 5e-015
gb|DN614203.1|DN614203 EST967253 Subtracted pine embryo lib... 78 1e-012
gb|BQ698971.1|BQ698971 NXRV117_G02_F NXRV (Nsf Xylem Root w... 60 3e-007
gb|BQ699494.1|BQ699494 NXRV123_A09_F NXRV (Nsf Xylem Root w... 60 3e-007
gb|BQ701117.1|BQ701117 NXRV115_G09_F NXRV (Nsf Xylem Root w... 60 3e-007
gb|AW758916.1|AW758916 NXNV_095_A10_F Nsf Xylem Normal wood... 56 5e-006
gb|BI397547.1|BI397547 NXPV_100_F10_F NXPV (Nsf Xylem Plani... 56 5e-006
gb|CF665210.1|CF665210 RTCNT1_14_C11.g1_A029 Root control P... 56 5e-006
gb|CX713671.1|CX713671 RTPQ1_11_G03.g1_A032 Roots treated w... 56 5e-006
gb|DR052374.1|DR052374 RTCA1_4_F02.b1_A029 Roots minus calc... 56 5e-006
gb|DR052455.1|DR052455 RTCA1_4_F02.g1_A029 Roots minus calc... 56 5e-006
gb|DR052714.1|DR052714 RTCA1_6_A01.g1_A029 Roots minus calc... 56 5e-006
gb|DR069142.1|DR069142 RTDK1_5_E03.b1_A029 Roots, dark Pinu... 56 5e-006
gb|DR071273.1|DR071273 RTDK1_18_G09.g1_A029 Roots, dark Pin... 56 5e-006
gb|DR093422.1|DR093422 STRR1_8_E01.b1_A033 Stem Response Re... 56 5e-006
gb|DR095233.1|DR095233 STRR1_19_E02.g1_A033 Stem Response R... 56 5e-006
gb|DR096316.1|DR096316 STRR1_27_E10.b1_A033 Stem Response R... 56 5e-006
gb|DR744646.1|DR744646 RTCU1_23_H08.g1_A029 Roots plus adde... 56 5e-006
gb|BG317464.1|BG317464 NXPV_002_B06_F NXPV (Nsf Xylem Plani... 54 2e-005
gb|CD016054.1|CD016054 NXCI_010_A04_F NXCI (Nsf Xylem Compr... 54 2e-005
gb|AW697968.1|AW697968 NXNV_072_H05_F Nsf Xylem Normal wood... 52 7e-005
gb|BQ106824.1|BQ106824 NXLV089_G06_F NXLV (Nsf Xylem Late w... 52 7e-005
gb|CD021364.1|CD021364 NXNV_142_E06_F Nsf Xylem Normal wood... 50 3e-004
gb|CO366299.1|CO366299 RTK1_27_B11.b1_A029 Roots minus pota... 46 0.005
gb|BX252145.1|BX252145 BX252145 Pinus pinaster differenciat... 44 0.018
gb|AW888153.1|AW888153 NXNV_129_G10_F Nsf Xylem Normal wood... 44 0.018
gb|BM158907.1|BM158907 NXLV_041_C04_F NXLV (Nsf Xylem Late ... 44 0.018
gb|BM367177.1|BM367177 NXLV_045_F07_F NXLV (Nsf Xylem Late ... 44 0.018
gb|CF392814.1|CF392814 RTDR3_19_A09.b1_A022 Loblolly pine r... 44 0.018
gb|CF665125.1|CF665125 RTCNT1_14_C11.b1_A029 Root control P... 44 0.018
gb|DR052646.1|DR052646 RTCA1_6_A01.b1_A029 Roots minus calc... 44 0.018
gb|DR078284.1|DR078284 RTFEPL1_3_C11.b1_A029 Roots plus add... 44 0.018
gb|DR093904.1|DR093904 STRR1_11_D08.b1_A033 Stem Response R... 44 0.018
gb|DR093979.1|DR093979 STRR1_11_D08.g1_A033 Stem Response R... 44 0.018
>gb|BX249219.1|BX249219 BX249219 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP021D09 similar to DIHYDROFLAVONOL 4
REDUCTASE, mRNA sequence
Length = 695
Score = 145 bits (73), Expect = 7e-033
Identities = 193/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 531 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 472
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| |||||||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 471 aaacgcttgctgttttctgagcagtagcgaaccacaggaagagcatcaatgaaattgctg 412
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 411 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 352
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 351 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 299
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 1364 cgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatcat 1423
||||||| ||| ||||||||||| || || || ||||||||||| || || || |||||
Sbjct: 196 cgtctcgtgcatcagcttctcgcacagatgcgaaccgatgaagcctcccgccccgatcat 137
Query: 1424 gcagat 1429
||||||
Sbjct: 136 gcagat 131
>gb|BX253128.1|BX253128 BX253128 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP078D08 similar to DIHYDROFLAVONOL 4
REDUCTASE, mRNA sequence
Length = 418
Score = 145 bits (73), Expect = 7e-033
Identities = 193/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 316 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 257
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| |||||||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 256 aaacgcttgctgttttctgagcagtagcgaaccacaggaagagcatcaatgaaattgctg 197
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 196 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 137
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 136 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 84
>gb|BX255602.1|BX255602 BX255602 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007F04 similar to DIHYDROFLAVONOL 4
REDUCTASE, mRNA sequence
Length = 692
Score = 145 bits (73), Expect = 7e-033
Identities = 193/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 531 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 472
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| |||||||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 471 aaacgcttgctgttttctgagcagtagcgaaccacaggaagagcatcaatgaaattgctg 412
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 411 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 352
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 351 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 299
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 1364 cgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatcat 1423
||||||| ||| ||||||||||| || || || ||||||||||| || || || |||||
Sbjct: 196 cgtctcgtgcatcagcttctcgcacagatgcgaaccgatgaagcctcccgccccgatcat 137
Query: 1424 gcagat 1429
||||||
Sbjct: 136 gcagat 131
>gb|AW043098.1|AW043098 ST29C11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST29C11, mRNA sequence
Length = 601
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 381 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 322
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 321 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 262
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 261 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 202
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 201 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 149
>gb|BG040920.1|BG040920 NXSI_116_F10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_116_F10 5' similar to Arabidopsis thaliana
sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 546
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 513 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 454
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 453 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 394
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 393 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 334
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 333 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 281
>gb|BG275555.1|BG275555 NXSI_143_B10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_143_B10 5' similar to Arabidopsis thaliana
sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 494
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 420 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 361
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 360 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 301
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 300 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 241
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 240 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 188
>gb|BQ290700.1|BQ290700 NXRV048_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV048_D07 5' similar to Arabidopsis thaliana
sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 720
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 288 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 229
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 228 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 169
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 168 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 109
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 108 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 56
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 498 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 455
>gb|BQ655033.1|BQ655033 NXRV089_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV089_D07 5' similar to Arabidopsis thaliana
sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 428
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 288 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 229
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 228 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 169
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 168 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 109
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 108 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 56
>gb|BQ701120.1|BQ701120 NXRV115_H01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV115_H01 5' similar to Arabidopsis thaliana
sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 629
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 288 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 229
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 228 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 169
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 168 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 109
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 108 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 56
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 498 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 455
>gb|CF392839.1|CF392839 RTDR3_19_A09.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_19_A09_A022 5', mRNA
sequence
Length = 730
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 455 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 396
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 395 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 336
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 335 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 276
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 275 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 223
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 665 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 622
>gb|CF477713.1|CF477713 RTWW3_9_B12.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_9_B12_A022 5', mRNA sequence
Length = 659
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 468 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 409
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 408 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 349
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 348 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 289
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 288 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 236
>gb|CF479822.1|CF479822 RTWW3_12_F01.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_12_F01_A022 5', mRNA sequence
Length = 737
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 415 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 356
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 355 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 296
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 295 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 236
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 235 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 183
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 625 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 582
>gb|CO366380.1|CO366380 RTK1_27_B11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B11_A029 5', mRNA sequence
Length = 873
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 496 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 437
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 436 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 377
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 376 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 317
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 316 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 264
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 706 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 663
>gb|DR069217.1|DR069217 RTDK1_5_E03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_5_E03_A029 5', mRNA sequence
Length = 879
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 326 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 267
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 266 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 207
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 206 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 147
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 146 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 94
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 536 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 493
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 751 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 692
Query: 661 tcatca 666
||||||
Sbjct: 691 tcatca 686
>gb|DR069320.1|DR069320 RTDK1_6_A07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_A07_A029 5', mRNA sequence
Length = 862
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 467 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 408
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 407 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 348
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 347 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 288
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 287 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 235
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 677 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 634
>gb|DR070303.1|DR070303 RTDK1_12_B03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_B03_A029 5', mRNA sequence
Length = 716
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 460 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 401
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 400 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 341
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 340 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 281
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 280 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 228
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 670 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 627
>gb|DR078355.1|DR078355 RTFEPL1_3_C11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_3_C11_A029 5', mRNA sequence
Length = 834
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 471 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 412
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 411 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 352
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 351 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 292
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 291 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 239
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 681 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 638
>gb|DR093506.1|DR093506 STRR1_8_E01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_8_E01_A033 5', mRNA sequence
Length = 857
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 487 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 428
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 427 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 368
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 367 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 308
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 307 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 255
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 697 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 654
>gb|DR096397.1|DR096397 STRR1_27_E10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_E10_A033 5', mRNA sequence
Length = 786
Score = 137 bits (69), Expect = 2e-030
Identities = 192/233 (82%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 489 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 430
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 429 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 370
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 369 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 310
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 309 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 257
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 699 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 656
>gb|CX649758.1|CX649758 COLD1_41_G06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_G06_A029 3', mRNA sequence
Length = 713
Score = 135 bits (68), Expect = 6e-030
Identities = 185/224 (82%)
Strand = Plus / Plus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 436 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 495
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 496 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 555
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 556 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 615
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtc 1249
|| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 616 attgtcagatccgccatcttgatgagcccctcaagcctggagtc 659
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 226 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 269
>gb|CX650068.1|CX650068 COLD1_43_G06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_G06_A029 3', mRNA sequence
Length = 759
Score = 135 bits (68), Expect = 6e-030
Identities = 185/224 (82%)
Strand = Plus / Plus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 481 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 540
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 541 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 600
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 601 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 660
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtc 1249
|| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 661 attgtcagatccgccatcttgatgagcccctcaagcctggagtc 704
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 271 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 314
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 56 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 115
Query: 661 tcatca 666
||||||
Sbjct: 116 tcatca 121
>gb|AW011417.1|AW011417 ST20E07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST20E07, mRNA sequence
Length = 588
Score = 131 bits (66), Expect = 1e-028
Identities = 191/233 (81%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 531 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 472
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 471 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 412
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 411 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 352
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||| ||||||||||||| ||||||||||| | ||||||
Sbjct: 351 attgtcagatccgccatcntgatgagcccctcaagcctggagtcgtgcttgat 299
>gb|AW290222.1|AW290222 NXNV015D06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015D06 5', mRNA sequence
Length = 485
Score = 129 bits (65), Expect = 4e-028
Identities = 191/233 (81%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 334 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 275
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || |||| ||||| ||||||
Sbjct: 274 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatatatgaaattgctg 215
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 214 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 155
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 154 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 102
>gb|BE123816.1|BE123816 NXNV_156_G08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_156_G08 5' similar to Arabidopsis thaliana sequence
At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 381
Score = 129 bits (65), Expect = 4e-028
Identities = 182/221 (82%)
Strand = Plus / Minus
Query: 1038 aagctgccgatggtcttgccatagacctcgcacgtggagaagtggatgagacgcttgctg 1097
||||||||||| ||||| ||||| ||||| || ||||| ||||| || | ||| ||||||
Sbjct: 221 aagctgccgattgtctttccatatacctcacaggtggaaaagtgaatcaaacgtttgctg 162
Query: 1098 ttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctgtagatggtgtca 1157
|| || |||||||| ||||| || || ||||| ||||| |||||||| ||||| |||
Sbjct: 161 ttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctgtatatggtatca 102
Query: 1158 agggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttgatggtcagatcg 1217
|| || || |||||||||||||| || || || || || || || ||||| ||||||||
Sbjct: 101 agaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattgattgtcagatcc 42
Query: 1218 gccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 41 gccatcttgatgagcccctcaagcctggagtcgtgcttgat 1
>gb|CD026855.1|CD026855 NXNV015D06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015D06 5' similar to Arabidopsis thaliana sequence
At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 485
Score = 129 bits (65), Expect = 4e-028
Identities = 191/233 (81%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 334 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 275
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || |||| ||||| ||||||
Sbjct: 274 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatatatgaaattgctg 215
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttg 1205
|| ||||| ||||| || || |||||||||||||| || || || || || || || |||
Sbjct: 214 tatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctagattg 155
Query: 1206 atggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
|| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 154 attgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 102
>gb|CF388667.1|CF388667 RTDR2_4_C01.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_C01_A021 5', mRNA sequence
Length = 425
Score = 101 bits (51), Expect = 9e-020
Identities = 111/131 (84%)
Strand = Plus / Minus
Query: 1128 gcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtg 1187
||||| ||||| |||||||| ||||| ||||| || || |||||||||||||| || ||
Sbjct: 408 gcatctatgaaattgctgtatatggtatcaagaggtcgtgtgttgtagtccgcaggtgta 349
Query: 1188 cagatagccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcctggag 1247
|| || || || || ||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct: 348 caaatggcagctagattgattgtcagatccgccatcttgatgagcccctcaagcctggag 289
Query: 1248 tcattcttgat 1258
|| | ||||||
Sbjct: 288 tcgtgcttgat 278
>gb|AW290492.1|AW290492 NXNV027E06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV027E06 5', mRNA sequence
Length = 461
Score = 87.7 bits (44), Expect = 1e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 1143 ctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccagg 1202
||||| ||||| ||||| || || |||||||||||||| || || || || || || ||
Sbjct: 413 ctgtatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctaga 354
Query: 1203 ttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
||||| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 353 ttgattgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 298
>gb|CD027150.1|CD027150 NXNV027E06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV027E06 5' similar to Arabidopsis thaliana sequence
At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 461
Score = 87.7 bits (44), Expect = 1e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 1143 ctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccagg 1202
||||| ||||| ||||| || || |||||||||||||| || || || || || || ||
Sbjct: 413 ctgtatatggtatcaagaggtcgtgtgttgtagtccgcaggtgtacaaatggcagctaga 354
Query: 1203 ttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
||||| |||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 353 ttgattgtcagatccgccatcttgatgagcccctcaagcctggagtcgtgcttgat 298
>gb|DN609044.1|DN609044 EST962094 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA773, mRNA sequence
Length = 478
Score = 85.7 bits (43), Expect = 5e-015
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 161 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 102
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 101 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 42
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgc 1180
|| ||||| ||||| || || ||||||||||||||
Sbjct: 41 tatatggtatcaagaggtcgtgtgttgtagtccgc 7
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatcc 843
|||||||||||||||||||| |||||||
Sbjct: 371 ggaatgaaatccatccttggaccaatcc 344
>gb|DT629726.1|DT629726 EST1156296 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMDF27 5' end, mRNA sequence
Length = 480
Score = 85.7 bits (43), Expect = 5e-015
Identities = 127/155 (81%)
Strand = Plus / Plus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 320 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 379
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || ||||| ||||| ||||||
Sbjct: 380 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcatctatgaaattgctg 439
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgc 1180
|| ||||| ||||| || || ||||||||||||||
Sbjct: 440 tatatggtatcaagaggtcgtgtgttgtagtccgc 474
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 816 ggaatgaaatccatccttggcccaatcc 843
|||||||||||||||||||| |||||||
Sbjct: 110 ggaatgaaatccatccttggaccaatcc 137
>gb|DN614203.1|DN614203 EST967253 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC130, mRNA sequence
Length = 501
Score = 77.8 bits (39), Expect = 1e-012
Identities = 126/155 (81%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 182 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 123
Query: 1086 agacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctg 1145
| ||| |||||||| || |||||||| ||||| || || || || ||||| ||||||
Sbjct: 122 aaacgtttgctgttttctgagcagtagcgaaccacaggaagagcgtctatgaaattgctg 63
Query: 1146 tagatggtgtcaagggggcgagtgttgtagtccgc 1180
|| ||||| ||||| || || ||||||||||||||
Sbjct: 62 tatatggtatcaagaggtcgtgtgttgtagtccgc 28
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatcc 843
|||||||||||||||||||| |||||||
Sbjct: 392 ggaatgaaatccatccttggaccaatcc 365
>gb|BQ698971.1|BQ698971 NXRV117_G02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV117_G02 5' similar to Arabidopsis thaliana
sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 687
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 97 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 38
Query: 1086 agacgcttgctgttctcggagcagta 1111
| ||| |||||||| || ||||||||
Sbjct: 37 aaacgtttgctgttttctgagcagta 12
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 307 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 264
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 522 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 463
Query: 661 tcatca 666
||||||
Sbjct: 462 tcatca 457
>gb|BQ699494.1|BQ699494 NXRV123_A09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV123_A09 5' similar to Arabidopsis thaliana
sequence At2g27860 putative dTDP-glucose 4-6-dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 438
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 100 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 41
Query: 1086 agacgcttgctgttctcggagcagta 1111
| ||| |||||||| || ||||||||
Sbjct: 40 aaacgtttgctgttttctgagcagta 15
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 310 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 267
>gb|BQ701117.1|BQ701117 NXRV115_G09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV115_G09 5' similar to Arabidopsis thaliana
sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 719
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtggatg 1085
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 100 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtgaatc 41
Query: 1086 agacgcttgctgttctcggagcagta 1111
| ||| |||||||| || ||||||||
Sbjct: 40 aaacgtttgctgttttctgagcagta 15
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 311 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 268
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 526 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 467
Query: 661 tcatca 666
||||||
Sbjct: 466 tcatca 461
>gb|AW758916.1|AW758916 NXNV_095_A10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_095_A10 5' similar to Arabidopsis thaliana
sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 294
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 136 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 93
>gb|BI397547.1|BI397547 NXPV_100_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_100_F10 5' similar to Arabidopsis
thaliana sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 467
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 177 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 134
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 392 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 333
Query: 661 tcatca 666
||||||
Sbjct: 332 tcatca 327
>gb|CF665210.1|CF665210 RTCNT1_14_C11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_14_C11_A029 5', mRNA sequence
Length = 697
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 190 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 147
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 405 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 346
Query: 661 tcatca 666
||||||
Sbjct: 345 tcatca 340
>gb|CX713671.1|CX713671 RTPQ1_11_G03.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_11_G03_A032 5', mRNA sequence
Length = 559
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 280 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 237
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtg 1081
||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 70 tcttttgggagaaagctgccgattgtctttccatatacctcacaggtggaaaagtg 15
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 495 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 436
Query: 661 tcatca 666
||||||
Sbjct: 435 tcatca 430
>gb|DR052374.1|DR052374 RTCA1_4_F02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F02_A029 3', mRNA sequence
Length = 924
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 173 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 130
Score = 46.1 bits (23), Expect = 0.005
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 441 ttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaa 499
||||| ||||||||||| || || | |||||| |||||||| ||||| || ||||||||
Sbjct: 548 ttgatgatagtcatgtctggtattcgcttgtcactatcatcatatccctccccgtagaa 490
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 388 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 329
Query: 661 tcatca 666
||||||
Sbjct: 328 tcatca 323
>gb|DR052455.1|DR052455 RTCA1_4_F02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F02_A029 5', mRNA sequence
Length = 920
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 206 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 163
Score = 46.1 bits (23), Expect = 0.005
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 441 ttgattatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaa 499
||||| ||||||||||| || || | |||||| |||||||| ||||| || ||||||||
Sbjct: 581 ttgatgatagtcatgtctggtattcgcttgtcactatcatcatatccctccccgtagaa 523
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 421 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 362
Query: 661 tcatca 666
||||||
Sbjct: 361 tcatca 356
>gb|DR052714.1|DR052714 RTCA1_6_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_A01_A029 5', mRNA sequence
Length = 748
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 205 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 162
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 420 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 361
Query: 661 tcatca 666
||||||
Sbjct: 360 tcatca 355
>gb|DR069142.1|DR069142 RTDK1_5_E03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_5_E03_A029 3', mRNA sequence
Length = 903
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 172 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 129
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 387 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 328
Query: 661 tcatca 666
||||||
Sbjct: 327 tcatca 322
>gb|DR071273.1|DR071273 RTDK1_18_G09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_G09_A029 5', mRNA sequence
Length = 623
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 194 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 151
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 409 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 350
Query: 661 tcatca 666
||||||
Sbjct: 349 tcatca 344
>gb|DR093422.1|DR093422 STRR1_8_E01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_8_E01_A033 3', mRNA sequence
Length = 830
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 90 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 47
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 305 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 246
Query: 661 tcatca 666
||||||
Sbjct: 245 tcatca 240
>gb|DR095233.1|DR095233 STRR1_19_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_19_E02_A033 5', mRNA sequence
Length = 818
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 165 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 122
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 380 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 321
Query: 661 tcatca 666
||||||
Sbjct: 320 tcatca 315
>gb|DR096316.1|DR096316 STRR1_27_E10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_E10_A033 3', mRNA sequence
Length = 845
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 96 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 53
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 311 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 252
Query: 661 tcatca 666
||||||
Sbjct: 251 tcatca 246
>gb|DR744646.1|DR744646 RTCU1_23_H08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_23_H08_A029 5', mRNA sequence
Length = 786
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
|||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 262 ggaatgaaatccatccttggaccaatccagttaaatggcctcac 219
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 601 cttcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaa 660
||||||| || ||||| ||||||||||| ||||| || || || | | |||||||||||
Sbjct: 477 cttcattattaggattgccaacattgaaaatgtgaccgtttgcccttgaaggattttcaa 418
Query: 661 tcatca 666
||||||
Sbjct: 417 tcatca 412
Score = 42.1 bits (21), Expect = 0.071
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1026 tctttggggaggaagctgccgatggtcttgccatagacctc 1066
||||| ||||| ||||||||||| ||||| ||||| |||||
Sbjct: 52 tcttttgggagaaagctgccgattgtctttccatatacctc 12
>gb|BG317464.1|BG317464 NXPV_002_B06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_B06 5' similar to Arabidopsis
thaliana sequence At2g27860 putative dTDP-glucose
4-6-dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 290
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 817 gaatgaaatccatccttggcccaatccaattaaaaggtctcac 859
||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 176 gaatgaaatccatccttggaccaatccagttaaatggcctcac 134
>gb|CD016054.1|CD016054 NXCI_010_A04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_010_A04 5' similar to Arabidopsis
thaliana sequence At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 159
Score = 54.0 bits (27), Expect = 2e-005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1203 ttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgat 1258
||||| |||||||| |||||||||||||||| | ||||||||||| | ||||||
Sbjct: 154 ttgattgtcagatccgccatcttgatgagccnnncaagcctggagtcgtgcttgat 99
>gb|AW697968.1|AW697968 NXNV_072_H05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_072_H05 5' similar to Arabidopsis thaliana sequence
At1g08200 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 367
Score = 52.0 bits (26), Expect = 7e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 1221 atcttgatgagcccctcgagcctggagtcattcttgat 1258
||||||||||||||||| ||||||||||| | ||||||
Sbjct: 327 atcttgatgagcccctcaagcctggagtcgtgcttgat 290
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 169,016
Number of Sequences: 355925
Number of extensions: 169016
Number of successful extensions: 47953
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 47735
Number of HSP's gapped (non-prelim): 181
length of query: 1644
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1624
effective length of database: 210,158,737
effective search space: 341297788888
effective search space used: 341297788888
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)