BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX249672.1|BX249672 BX249672 Pinus pinaster differenciat... 135 4e-030
gb|CO198335.1|CO198335 GEO1_13_A07.b1_A029 Root gravitropis... 135 4e-030
gb|CO364924.1|CO364924 RTK1_22_D04.g1_A029 Roots minus pota... 135 4e-030
gb|CO366719.1|CO366719 RTK1_29_D03.g1_A029 Roots minus pota... 135 4e-030
gb|CO366730.1|CO366730 RTK1_29_E08.g1_A029 Roots minus pota... 135 4e-030
gb|CO367067.1|CO367067 RTK1_32_A04.b1_A029 Roots minus pota... 135 4e-030
gb|CO368370.1|CO368370 RTK1_40_E12.b1_A029 Roots minus pota... 135 4e-030
gb|DR013906.1|DR013906 HEAT1_22_F08.b1_A029 Root at 37 C fo... 135 4e-030
gb|DR023409.1|DR023409 STRS1_57_H08.b1_A034 Shoot tip pitch... 135 4e-030
gb|DR050529.1|DR050529 RTBOR1_24_D01.b1_A029 Roots plus add... 135 4e-030
gb|DR052071.1|DR052071 RTCA1_2_F02.b1_A029 Roots minus calc... 135 4e-030
gb|DR052149.1|DR052149 RTCA1_2_F02.g1_A029 Roots minus calc... 135 4e-030
gb|DR110260.1|DR110260 RTS1_9_G11.g1_A029 Roots minus sulfu... 135 4e-030
gb|DR161632.1|DR161632 RTFE1_13_B02.b1_A029 Roots minus iro... 135 4e-030
gb|DR745554.1|DR745554 RTCU1_30_B10.g1_A029 Roots plus adde... 135 4e-030
gb|CF668610.1|CF668610 RTCNT1_37_C10.g1_A029 Root control P... 127 1e-027
gb|CX713793.1|CX713793 RTPQ1_13_E07.b1_A032 Roots treated w... 127 1e-027
gb|CX713829.1|CX713829 RTPQ1_13_E07.g1_A032 Roots treated w... 127 1e-027
gb|DR048427.1|DR048427 RTBOR1_8_H01.g2_A029 Roots plus adde... 127 1e-027
gb|DR054592.1|DR054592 RTCA1_18_G04.b1_A029 Roots minus cal... 127 1e-027
gb|DR093661.1|DR093661 STRR1_9_D09.g1_A033 Stem Response Re... 127 1e-027
gb|DR117365.1|DR117365 RTMG1_6_B12.g1_A029 Roots minus magn... 127 1e-027
gb|DR119408.1|DR119408 RTMG1_23_C07.b1_A029 Roots minus mag... 127 1e-027
gb|DR119489.1|DR119489 RTMG1_23_C07.g1_A029 Roots minus mag... 127 1e-027
gb|DR048419.1|DR048419 RTBOR1_8_G01.g2_A029 Roots plus adde... 119 3e-025
gb|DR162312.1|DR162312 RTFE1_17_C03.b1_A029 Roots minus iro... 94 2e-017
gb|BF518290.1|BF518290 NXSI_037_D11_F NXSI (Nsf Xylem Side ... 86 4e-015
gb|BQ107923.1|BQ107923 NXLV102_F01_F NXLV (Nsf Xylem Late w... 86 4e-015
gb|BQ702019.1|BQ702019 NXSI_123_E01_F NXSI (Nsf Xylem Side ... 86 4e-015
gb|DR054676.1|DR054676 RTCA1_18_G04.g1_A029 Roots minus cal... 86 4e-015
gb|DR745502.1|DR745502 RTCU1_30_B10.b1_A029 Roots plus adde... 86 4e-015
gb|BQ197029.1|BQ197029 NXLV108_E03_F NXLV (Nsf Xylem Late w... 82 6e-014
gb|CR392554.1|CR392554 CR392554 RN Pinus pinaster cDNA clon... 62 5e-008
gb|BM492426.1|BM492426 NXRV_025_C02_F NXRV (Nsf Xylem Root ... 40 0.20
>gb|BX249672.1|BX249672 BX249672 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026H09 similar to HEAT SHOCK PROTEIN STI1,
mRNA sequence
Length = 672
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 401 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 342
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 341 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 282
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 281 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 222
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 221 ctccttcatttcctcagggcttatatcacccctgttggttttgttgatttgctcaataca 162
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 161 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 102
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 101 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 46
>gb|CO198335.1|CO198335 GEO1_13_A07.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_13_A07_A029 3', mRNA sequence
Length = 681
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 407 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 348
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 347 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 288
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 287 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 228
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 227 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 168
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 167 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 108
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 107 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 52
>gb|CO364924.1|CO364924 RTK1_22_D04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D04_A029 5', mRNA sequence
Length = 843
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Plus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 280 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 339
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 340 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 399
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 400 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 459
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 460 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 519
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 520 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 579
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 580 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 635
>gb|CO366719.1|CO366719 RTK1_29_D03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_D03_A029 5', mRNA sequence
Length = 823
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Plus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 286 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 345
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 346 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 405
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 406 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 465
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 466 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 525
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 526 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 585
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 586 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 641
>gb|CO366730.1|CO366730 RTK1_29_E08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_E08_A029 5', mRNA sequence
Length = 832
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 734 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 675
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 674 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 615
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 614 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 555
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 554 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 495
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 494 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 435
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 434 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 379
>gb|CO367067.1|CO367067 RTK1_32_A04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_A04_A029 3', mRNA sequence
Length = 863
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 517 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 458
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 457 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 398
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 397 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 338
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 337 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 278
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 277 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 218
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 217 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 162
>gb|CO368370.1|CO368370 RTK1_40_E12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_E12_A029 3', mRNA sequence
Length = 816
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 490 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 431
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 430 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 371
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 370 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 311
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 310 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 251
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 250 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 191
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 190 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 135
>gb|DR013906.1|DR013906 HEAT1_22_F08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_F08_A029 3', mRNA sequence
Length = 708
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 484 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 425
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 424 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 365
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 364 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 305
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 304 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 245
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 244 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 185
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 184 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 129
>gb|DR023409.1|DR023409 STRS1_57_H08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_57_H08_A034 3', mRNA sequence
Length = 827
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 475 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 416
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 415 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 356
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 355 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 296
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 295 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 236
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 235 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 176
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 175 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 120
>gb|DR050529.1|DR050529 RTBOR1_24_D01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_D01_A029 3', mRNA sequence
Length = 845
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 591 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 532
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 531 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 472
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 471 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 412
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 411 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 352
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 351 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 292
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 291 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 236
>gb|DR052071.1|DR052071 RTCA1_2_F02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_F02_A029 3', mRNA sequence
Length = 829
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 407 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 348
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 347 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 288
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 287 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 228
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 227 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 168
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 167 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 108
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 107 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 52
>gb|DR052149.1|DR052149 RTCA1_2_F02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_F02_A029 5', mRNA sequence
Length = 913
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 602 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 543
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 542 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 483
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 482 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 423
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 422 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 363
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 362 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 303
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 302 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 247
>gb|DR110260.1|DR110260 RTS1_9_G11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_9_G11_A029 5', mRNA sequence
Length = 841
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 524 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 465
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 464 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 405
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 404 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 345
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 344 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 285
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 284 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 225
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 224 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 169
>gb|DR161632.1|DR161632 RTFE1_13_B02.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_13_B02_A029 3', mRNA sequence
Length = 639
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 436 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 377
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 376 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 317
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 316 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 257
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 256 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 197
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 196 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 137
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 136 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 81
>gb|DR745554.1|DR745554 RTCU1_30_B10.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_B10_A029 5', mRNA sequence
Length = 684
Score = 135 bits (68), Expect = 4e-030
Identities = 284/356 (79%)
Strand = Plus / Plus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 168 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 227
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 228 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 287
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 288 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 347
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 348 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 407
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 408 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 467
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 468 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 523
>gb|CF668610.1|CF668610 RTCNT1_37_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_C10_A029 5', mRNA sequence
Length = 830
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Plus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 346 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 405
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 406 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 465
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || || || |||||||| ||||| ||||||
Sbjct: 466 cataacaggatccgaaagaatatgctgaatatcaggatcttgcattgcttttgcctgtct 525
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 526 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 585
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 586 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 645
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 646 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 701
>gb|CX713793.1|CX713793 RTPQ1_13_E07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_E07_A032 3', mRNA sequence
Length = 714
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 357 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 298
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 297 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 238
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 237 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 178
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 177 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 118
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 117 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 58
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| || ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 57 ggtttccaaagctttgtcatattctttcatgaagaactgaatagcagctttccttg 2
>gb|CX713829.1|CX713829 RTPQ1_13_E07.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_E07_A032 5', mRNA sequence
Length = 667
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 558 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 499
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 498 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 439
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || ||||| |||||||| ||||| ||||||
Sbjct: 438 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttttgcctgtct 379
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 378 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 319
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 318 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 259
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| || ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 258 ggtttccaaagctttgtcatattctttcatgaagaactgaatagcagctttccttg 203
>gb|DR048427.1|DR048427 RTBOR1_8_H01.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_8_H01_A029 5', mRNA sequence
Length = 742
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Plus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 307 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 366
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 367 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 426
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || || || |||||||| ||||| ||||||
Sbjct: 427 cataacaggatccgaaagaatatgctgaatatcaggatcttgcattgcttttgcctgtct 486
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 487 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 546
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 547 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 606
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 607 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 662
>gb|DR054592.1|DR054592 RTCA1_18_G04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G04_A029 3', mRNA sequence
Length = 624
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 409 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 350
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 349 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 290
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || || || |||||||| ||||| ||||||
Sbjct: 289 cataacaggatccgaaagaatatgctgaatatcaggatcttgcattgcttttgcctgtct 230
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 229 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 170
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 169 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 110
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 109 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 54
>gb|DR093661.1|DR093661 STRR1_9_D09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_9_D09_A033 5', mRNA sequence
Length = 903
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Plus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 294 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 353
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 354 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 413
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || || || |||||||| ||||| ||||||
Sbjct: 414 cataacaggatccgaaagaatatgctgaatatcaggatcttgcattgcttttgcctgtct 473
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 474 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 533
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 534 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 593
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 594 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 649
>gb|DR117365.1|DR117365 RTMG1_6_B12.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_B12_A029 5', mRNA sequence
Length = 861
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 607 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 548
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 547 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 488
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || || || |||||||| ||||| ||||||
Sbjct: 487 cataacaggatccgaaagaatatgctgaatatcaggatcttgcattgcttttgcctgtct 428
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 427 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 368
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 367 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 308
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 307 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 252
>gb|DR119408.1|DR119408 RTMG1_23_C07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_C07_A029 3', mRNA sequence
Length = 759
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 419 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 360
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 359 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 300
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || || || |||||||| ||||| ||||||
Sbjct: 299 cataacaggatccgaaagaatatgctgaatatcaggatcttgcattgcttttgcctgtct 240
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 239 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 180
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 179 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 120
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 119 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 64
>gb|DR119489.1|DR119489 RTMG1_23_C07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_C07_A029 5', mRNA sequence
Length = 679
Score = 127 bits (64), Expect = 1e-027
Identities = 283/356 (79%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 593 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 534
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 533 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 474
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || || || |||||||| ||||| ||||||
Sbjct: 473 cataacaggatccgaaagaatatgctgaatatcaggatcttgcattgcttttgcctgtct 414
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 413 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 354
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 353 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 294
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 293 ggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttccttg 238
>gb|DR048419.1|DR048419 RTBOR1_8_G01.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_8_G01_A029 5', mRNA sequence
Length = 725
Score = 119 bits (60), Expect = 3e-025
Identities = 282/356 (79%)
Strand = Plus / Plus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 293 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 352
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 353 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 412
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtct 492
||| | ||| || | |||||| | ||| || || || |||||||| ||||| ||||||
Sbjct: 413 cataacaggatccgaaagaatatgctgaatatcaggatcttgcattgcttttgcctgtct 472
Query: 493 ttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgca 552
|| | || ||| || | ||||| ||||| ||||| | ||||| ||||| ||||| ||
Sbjct: 473 ctccttcatttcctcggggcttatatcacccctgttggttttgttgatttgctcaataca 532
Query: 553 cctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgata 612
|||| ||||| || | |||||||||||| || ||| | || || || |||||||
Sbjct: 533 tctccggacaccttctaacagttcctggttgttttcatcaagtttgagaccttcctgata 592
Query: 613 ggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttg 668
|||||||| ||| ||||||||||||||||||| ||| ||||| ||| |||||||||
Sbjct: 593 ggtttccaaggctttgtcatattctttcatgaggaactgaatagcagctttccttg 648
>gb|DR162312.1|DR162312 RTFE1_17_C03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_17_C03_A029 3', mRNA sequence
Length = 499
Score = 93.7 bits (47), Expect = 2e-017
Identities = 140/171 (81%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 217 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 158
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 157 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 98
Query: 433 catgatagggtcggtaagaatgttctggatctctgggtcttgcatagcttt 483
||| | ||| || | |||||| | ||| || ||||| |||||||| |||||
Sbjct: 97 cataacaggatccgaaagaatatgctgaatatctggatcttgcattgcttt 47
>gb|BF518290.1|BF518290 NXSI_037_D11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_037_D11 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 529
Score = 85.7 bits (43), Expect = 4e-015
Identities = 103/123 (83%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 203 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 144
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 143 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 84
Query: 433 cat 435
|||
Sbjct: 83 cat 81
>gb|BQ107923.1|BQ107923 NXLV102_F01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV102_F01 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 570
Score = 85.7 bits (43), Expect = 4e-015
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 606 cctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttcc 665
||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 283 cctgataggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttcc 224
Query: 666 ttg 668
|||
Sbjct: 223 ttg 221
>gb|BQ702019.1|BQ702019 NXSI_123_E01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_123_E01 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 425
Score = 85.7 bits (43), Expect = 4e-015
Identities = 103/123 (83%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 203 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 144
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtct 432
|||||||| || ||||| || ||| |||||||||| |||||||| |||| | ||||||
Sbjct: 143 attcttcagatgatcctgtgctgcctttgggttctcttggaaatccattagaatctgtct 84
Query: 433 cat 435
|||
Sbjct: 83 cat 81
>gb|DR054676.1|DR054676 RTCA1_18_G04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G04_A029 5', mRNA sequence
Length = 706
Score = 85.7 bits (43), Expect = 4e-015
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 606 cctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttcc 665
||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 529 cctgataggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttcc 470
Query: 666 ttg 668
|||
Sbjct: 469 ttg 467
>gb|DR745502.1|DR745502 RTCU1_30_B10.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_B10_A029 3', mRNA sequence
Length = 572
Score = 85.7 bits (43), Expect = 4e-015
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 606 cctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttcc 665
||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 123 cctgataggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttcc 182
Query: 666 ttg 668
|||
Sbjct: 183 ttg 185
>gb|BQ197029.1|BQ197029 NXLV108_E03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV108_E03 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 448
Score = 81.8 bits (41), Expect = 6e-014
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 313 tcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagg 372
|||||||| ||| || || || ||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 137 tcatctcacttgtacaatacccgcactcacaagcttctgaatcttatgcattacttcagg 78
Query: 373 gttcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||||||| || ||||| || ||| |||||||||| ||||||||
Sbjct: 77 attcttcagatgatcctgtgctgcctttgggttctcttggaaatc 33
>gb|CR392554.1|CR392554 CR392554 RN Pinus pinaster cDNA clone RN34C03, mRNA sequence
Length = 401
Score = 61.9 bits (31), Expect = 5e-008
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 626 ttgtcatattctttcatgaagaattgaattgcacctttccttg 668
||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 397 ttgtcatattctttcatgaagaactgaatagcagctttccttg 355
>gb|BM492426.1|BM492426 NXRV_025_C02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_025_C02 5', mRNA sequence
Length = 790
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23 atatattatattcaaatatttaat 46
|||||||||||||||||| |||||
Sbjct: 695 atatattatattcaaatagttaat 672
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,839
Number of Sequences: 355925
Number of extensions: 136839
Number of successful extensions: 39120
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39030
Number of HSP's gapped (non-prelim): 90
length of query: 1151
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1132
effective length of database: 210,514,662
effective search space: 238302597384
effective search space used: 238302597384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)