BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX249672.1|BX249672 BX249672 Pinus pinaster differenciat... 119 2e-025
gb|CO198335.1|CO198335 GEO1_13_A07.b1_A029 Root gravitropis... 119 2e-025
gb|CO364924.1|CO364924 RTK1_22_D04.g1_A029 Roots minus pota... 119 2e-025
gb|CO366719.1|CO366719 RTK1_29_D03.g1_A029 Roots minus pota... 119 2e-025
gb|CO366730.1|CO366730 RTK1_29_E08.g1_A029 Roots minus pota... 119 2e-025
gb|CO367067.1|CO367067 RTK1_32_A04.b1_A029 Roots minus pota... 119 2e-025
gb|CO368370.1|CO368370 RTK1_40_E12.b1_A029 Roots minus pota... 119 2e-025
gb|DR013906.1|DR013906 HEAT1_22_F08.b1_A029 Root at 37 C fo... 119 2e-025
gb|DR023409.1|DR023409 STRS1_57_H08.b1_A034 Shoot tip pitch... 119 2e-025
gb|DR050529.1|DR050529 RTBOR1_24_D01.b1_A029 Roots plus add... 119 2e-025
gb|DR052071.1|DR052071 RTCA1_2_F02.b1_A029 Roots minus calc... 119 2e-025
gb|DR052149.1|DR052149 RTCA1_2_F02.g1_A029 Roots minus calc... 119 2e-025
gb|DR110260.1|DR110260 RTS1_9_G11.g1_A029 Roots minus sulfu... 119 2e-025
gb|DR161632.1|DR161632 RTFE1_13_B02.b1_A029 Roots minus iro... 119 2e-025
gb|DR745554.1|DR745554 RTCU1_30_B10.g1_A029 Roots plus adde... 119 2e-025
gb|CF668610.1|CF668610 RTCNT1_37_C10.g1_A029 Root control P... 111 5e-023
gb|CX713793.1|CX713793 RTPQ1_13_E07.b1_A032 Roots treated w... 111 5e-023
gb|CX713829.1|CX713829 RTPQ1_13_E07.g1_A032 Roots treated w... 111 5e-023
gb|DR048427.1|DR048427 RTBOR1_8_H01.g2_A029 Roots plus adde... 111 5e-023
gb|DR054592.1|DR054592 RTCA1_18_G04.b1_A029 Roots minus cal... 111 5e-023
gb|DR093661.1|DR093661 STRR1_9_D09.g1_A033 Stem Response Re... 111 5e-023
gb|DR117365.1|DR117365 RTMG1_6_B12.g1_A029 Roots minus magn... 111 5e-023
gb|DR119408.1|DR119408 RTMG1_23_C07.b1_A029 Roots minus mag... 111 5e-023
gb|DR119489.1|DR119489 RTMG1_23_C07.g1_A029 Roots minus mag... 111 5e-023
gb|DR048419.1|DR048419 RTBOR1_8_G01.g2_A029 Roots plus adde... 103 1e-020
gb|BQ107923.1|BQ107923 NXLV102_F01_F NXLV (Nsf Xylem Late w... 82 5e-014
gb|DR054676.1|DR054676 RTCA1_18_G04.g1_A029 Roots minus cal... 82 5e-014
gb|DR745502.1|DR745502 RTCU1_30_B10.b1_A029 Roots plus adde... 82 5e-014
gb|DR162312.1|DR162312 RTFE1_17_C03.b1_A029 Roots minus iro... 74 1e-011
gb|BF518290.1|BF518290 NXSI_037_D11_F NXSI (Nsf Xylem Side ... 66 3e-009
gb|BQ197029.1|BQ197029 NXLV108_E03_F NXLV (Nsf Xylem Late w... 66 3e-009
gb|BQ702019.1|BQ702019 NXSI_123_E01_F NXSI (Nsf Xylem Side ... 66 3e-009
gb|CR392554.1|CR392554 CR392554 RN Pinus pinaster cDNA clon... 66 3e-009
gb|BI397824.1|BI397824 NXPV_108_B07_F NXPV (Nsf Xylem Plani... 52 4e-005
gb|DR162548.1|DR162548 RTFE1_18_C01.g1_A029 Roots minus iro... 52 4e-005
>gb|BX249672.1|BX249672 BX249672 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026H09 similar to HEAT SHOCK PROTEIN STI1,
mRNA sequence
Length = 672
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 379 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 320
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 319 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 260
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 259 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcagggctt 200
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 199 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 140
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 139 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 80
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 79 tctttcatgaagaactgaatagcagctttcct 48
>gb|CO198335.1|CO198335 GEO1_13_A07.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_13_A07_A029 3', mRNA sequence
Length = 681
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 385 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 326
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 325 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 266
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 265 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 206
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 205 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 146
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 145 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 86
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 85 tctttcatgaagaactgaatagcagctttcct 54
>gb|CO364924.1|CO364924 RTK1_22_D04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D04_A029 5', mRNA sequence
Length = 843
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Plus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 302 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 361
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 362 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 421
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 422 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 481
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 482 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 541
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 542 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 601
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 602 tctttcatgaagaactgaatagcagctttcct 633
>gb|CO366719.1|CO366719 RTK1_29_D03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_D03_A029 5', mRNA sequence
Length = 823
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Plus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 308 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 367
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 368 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 427
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 428 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 487
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 488 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 547
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 548 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 607
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 608 tctttcatgaagaactgaatagcagctttcct 639
>gb|CO366730.1|CO366730 RTK1_29_E08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_E08_A029 5', mRNA sequence
Length = 832
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 712 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 653
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 652 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 593
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 592 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 533
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 532 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 473
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 472 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 413
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 412 tctttcatgaagaactgaatagcagctttcct 381
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 727 tgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataa 786
|||| ||| ||||| || || |||||||| | ||| ||||| ||||| ||||||||| ||
Sbjct: 205 tgctgcttaaagaattcatttcctttctcccgctcttcatccgccaactttggatcaaaa 146
Query: 787 aactcttgttgctctaactctttctttgctttctcagc 824
|| ||||| || || ||||||||||||||||||||
Sbjct: 145 tcttcctgttgttccaaatctttctttgctttctcagc 108
>gb|CO367067.1|CO367067 RTK1_32_A04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_A04_A029 3', mRNA sequence
Length = 863
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 495 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 436
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 435 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 376
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 375 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 316
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 315 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 256
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 255 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 196
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 195 tctttcatgaagaactgaatagcagctttcct 164
>gb|CO368370.1|CO368370 RTK1_40_E12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_E12_A029 3', mRNA sequence
Length = 816
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 468 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 409
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 408 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 349
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 348 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 289
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 288 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 229
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 228 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 169
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 168 tctttcatgaagaactgaatagcagctttcct 137
>gb|DR013906.1|DR013906 HEAT1_22_F08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_F08_A029 3', mRNA sequence
Length = 708
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 462 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 403
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 402 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 343
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 342 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 283
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 282 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 223
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 222 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 163
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 162 tctttcatgaagaactgaatagcagctttcct 131
>gb|DR023409.1|DR023409 STRS1_57_H08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_57_H08_A034 3', mRNA sequence
Length = 827
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 453 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 394
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 393 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 334
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 333 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 274
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 273 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 214
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 213 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 154
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 153 tctttcatgaagaactgaatagcagctttcct 122
>gb|DR050529.1|DR050529 RTBOR1_24_D01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_D01_A029 3', mRNA sequence
Length = 845
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 569 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 510
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 509 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 450
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 449 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 390
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 389 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 330
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 329 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 270
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 269 tctttcatgaagaactgaatagcagctttcct 238
>gb|DR052071.1|DR052071 RTCA1_2_F02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_F02_A029 3', mRNA sequence
Length = 829
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 385 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 326
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 325 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 266
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 265 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 206
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 205 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 146
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 145 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 86
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 85 tctttcatgaagaactgaatagcagctttcct 54
>gb|DR052149.1|DR052149 RTCA1_2_F02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_F02_A029 5', mRNA sequence
Length = 913
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 580 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 521
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 520 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 461
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 460 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 401
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 400 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 341
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 340 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 281
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 280 tctttcatgaagaactgaatagcagctttcct 249
>gb|DR110260.1|DR110260 RTS1_9_G11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_9_G11_A029 5', mRNA sequence
Length = 841
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 502 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 443
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 442 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 383
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 382 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 323
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 322 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 263
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 262 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 203
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 202 tctttcatgaagaactgaatagcagctttcct 171
>gb|DR161632.1|DR161632 RTFE1_13_B02.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_13_B02_A029 3', mRNA sequence
Length = 639
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 414 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 355
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 354 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 295
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 294 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 235
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 234 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 175
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 174 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 115
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 114 tctttcatgaagaactgaatagcagctttcct 83
>gb|DR745554.1|DR745554 RTCU1_30_B10.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_B10_A029 5', mRNA sequence
Length = 684
Score = 119 bits (60), Expect = 2e-025
Identities = 264/332 (79%)
Strand = Plus / Plus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 190 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 249
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 250 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 309
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 310 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 369
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 370 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 429
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 430 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 489
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 490 tctttcatgaagaactgaatagcagctttcct 521
>gb|CF668610.1|CF668610 RTCNT1_37_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_C10_A029 5', mRNA sequence
Length = 830
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Plus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 368 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 427
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 428 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 487
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || || || |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 488 tgctgaatatcaggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 547
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 548 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 607
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 608 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 667
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 668 tctttcatgaagaactgaatagcagctttcct 699
>gb|CX713793.1|CX713793 RTPQ1_13_E07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_E07_A032 3', mRNA sequence
Length = 714
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 335 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 276
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 275 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 216
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 215 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 156
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 155 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 96
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| || |||||||||
Sbjct: 95 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaagctttgtcatat 36
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 35 tctttcatgaagaactgaatagcagctttcct 4
>gb|CX713829.1|CX713829 RTPQ1_13_E07.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_E07_A032 5', mRNA sequence
Length = 667
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 536 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 477
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 476 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 417
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || ||||| |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 416 tgctgaatatctggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 357
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 356 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 297
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| || |||||||||
Sbjct: 296 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaagctttgtcatat 237
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 236 tctttcatgaagaactgaatagcagctttcct 205
>gb|DR048427.1|DR048427 RTBOR1_8_H01.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_8_H01_A029 5', mRNA sequence
Length = 742
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Plus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 329 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 388
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 389 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 448
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || || || |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 449 tgctgaatatcaggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 508
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 509 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 568
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 569 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 628
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 629 tctttcatgaagaactgaatagcagctttcct 660
>gb|DR054592.1|DR054592 RTCA1_18_G04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G04_A029 3', mRNA sequence
Length = 624
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 387 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 328
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 327 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 268
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || || || |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 267 tgctgaatatcaggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 208
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 207 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 148
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 147 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 88
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 87 tctttcatgaagaactgaatagcagctttcct 56
>gb|DR093661.1|DR093661 STRR1_9_D09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_9_D09_A033 5', mRNA sequence
Length = 903
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Plus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 316 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 375
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 376 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 435
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || || || |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 436 tgctgaatatcaggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 495
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 496 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 555
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 556 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 615
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 616 tctttcatgaagaactgaatagcagctttcct 647
>gb|DR117365.1|DR117365 RTMG1_6_B12.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_B12_A029 5', mRNA sequence
Length = 861
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 585 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 526
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 525 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 466
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || || || |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 465 tgctgaatatcaggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 406
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 405 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 346
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 345 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 286
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 285 tctttcatgaagaactgaatagcagctttcct 254
>gb|DR119408.1|DR119408 RTMG1_23_C07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_C07_A029 3', mRNA sequence
Length = 759
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 397 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 338
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 337 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 278
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || || || |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 277 tgctgaatatcaggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 218
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 217 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 158
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 157 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 98
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 97 tctttcatgaagaactgaatagcagctttcct 66
>gb|DR119489.1|DR119489 RTMG1_23_C07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_C07_A029 5', mRNA sequence
Length = 679
Score = 111 bits (56), Expect = 5e-023
Identities = 263/332 (79%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 571 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 512
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 511 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 452
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || || || |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 451 tgctgaatatcaggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 392
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 391 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 332
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 331 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 272
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||||||||||||| ||| |||||||
Sbjct: 271 tctttcatgaagaactgaatagcagctttcct 240
>gb|DR048419.1|DR048419 RTBOR1_8_G01.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_8_G01_A029 5', mRNA sequence
Length = 725
Score = 103 bits (52), Expect = 1e-020
Identities = 262/332 (78%)
Strand = Plus / Plus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 315 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 374
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 375 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 434
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
| ||| || || || |||||||| ||||| |||||| || | || ||| || |||||
Sbjct: 435 tgctgaatatcaggatcttgcattgcttttgcctgtctctccttcatttcctcggggctt 494
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||||| |||||||| || |||| ||| ||| ||||| || | ||||
Sbjct: 495 atatcacccctgttggttttgttgatttgctcaatacatctccggacaccttctaacagt 554
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
||||||||||| ||| | || | || |||| |||||||||| ||| |||||||||
Sbjct: 555 tcctggttgttttcatcaagtttgagaccttcctgataggtttccaaggctttgtcatat 614
Query: 520 tctttcatgaagaactgaattgcacctttcct 551
|||||||||| ||||||||| ||| |||||||
Sbjct: 615 tctttcatgaggaactgaatagcagctttcct 646
>gb|BQ107923.1|BQ107923 NXLV102_F01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV102_F01 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 570
Score = 81.8 bits (41), Expect = 5e-014
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 491 cctggtaggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcc 550
|||| |||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 283 cctgataggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttcc 224
Query: 551 t 551
|
Sbjct: 223 t 223
>gb|DR054676.1|DR054676 RTCA1_18_G04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G04_A029 5', mRNA sequence
Length = 706
Score = 81.8 bits (41), Expect = 5e-014
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 491 cctggtaggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcc 550
|||| |||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 529 cctgataggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttcc 470
Query: 551 t 551
|
Sbjct: 469 t 469
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 727 tgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataa 786
|||| ||| ||||| || || |||||||| | ||| ||||| ||||| ||||||||| ||
Sbjct: 293 tgctgcttaaagaattcatttcctttctcccgctcttcatccgccaactttggatcaaaa 234
Query: 787 aactcttgttgctctaactctttctttgctttctcagc 824
|| ||||| || || ||||||||||||||||||||
Sbjct: 233 tcttcctgttgttccaaatctttctttgctttctcagc 196
>gb|DR745502.1|DR745502 RTCU1_30_B10.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_B10_A029 3', mRNA sequence
Length = 572
Score = 81.8 bits (41), Expect = 5e-014
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 491 cctggtaggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcc 550
|||| |||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 123 cctgataggtttccaaggctttgtcatattctttcatgaagaactgaatagcagctttcc 182
Query: 551 t 551
|
Sbjct: 183 t 183
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 727 tgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataa 786
|||| ||| ||||| || || |||||||| | ||| ||||| ||||| ||||||||| ||
Sbjct: 359 tgctgcttaaagaattcatttcctttctcccgctcttcatccgccaactttggatcaaaa 418
Query: 787 aactcttgttgctctaactctttctttgctttctcagc 824
|| ||||| || || ||||||||||||||||||||
Sbjct: 419 tcttcctgttgttccaaatctttctttgctttctcagc 456
>gb|DR162312.1|DR162312 RTFE1_17_C03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_17_C03_A029 3', mRNA sequence
Length = 499
Score = 73.8 bits (37), Expect = 1e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 195 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 136
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
|| |||||||||| |||||||| ||||||| ||||| ||| | ||| || | ||||||
Sbjct: 135 gcctttgggttctcttggaaatccattagaatctgtctcataacaggatccgaaagaata 76
Query: 340 ttctggatctctgggtcttgcatagcttt 368
| ||| || ||||| |||||||| |||||
Sbjct: 75 tgctgaatatctggatcttgcattgcttt 47
>gb|BF518290.1|BF518290 NXSI_037_D11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_037_D11 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 529
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 181 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 122
Query: 280 gcacttgggttctcctggaaatctattagaacctgtc 316
|| |||||||||| |||||||| ||||||| |||||
Sbjct: 121 gcctttgggttctcttggaaatccattagaatctgtc 85
>gb|BQ197029.1|BQ197029 NXLV108_E03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV108_E03 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 448
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 115 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 56
Query: 280 gcacttgggttctcctggaaatctattagaacctgtc 316
|| |||||||||| |||||||| ||||||| |||||
Sbjct: 55 gcctttgggttctcttggaaatccattagaatctgtc 19
>gb|BQ702019.1|BQ702019 NXSI_123_E01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_123_E01 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 425
Score = 65.9 bits (33), Expect = 3e-009
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 220 gcacttacaagcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggcc 279
||||| ||||||||||||||||| ||||| || | || |||||||| || ||||| ||
Sbjct: 181 gcactcacaagcttctgaatcttatgcattacttcaggattcttcagatgatcctgtgct 122
Query: 280 gcacttgggttctcctggaaatctattagaacctgtc 316
|| |||||||||| |||||||| ||||||| |||||
Sbjct: 121 gcctttgggttctcttggaaatccattagaatctgtc 85
>gb|CR392554.1|CR392554 CR392554 RN Pinus pinaster cDNA clone RN34C03, mRNA sequence
Length = 401
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 511 ttgtcatattctttcatgaagaactgaattgcacctttcct 551
||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 397 ttgtcatattctttcatgaagaactgaatagcagctttcct 357
Score = 60.0 bits (30), Expect = 2e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 727 tgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataa 786
|||| ||| ||||| ||||| |||||||| | ||| ||||| ||||| ||||||||| ||
Sbjct: 181 tgctgcttaaagaattcgtttcctttctcccgctcttcatccgccaactttggatcaaaa 122
Query: 787 aactcttgttgctctaactctttctttgctttctcagc 824
|| ||||| || || ||||||||||||||||||||
Sbjct: 121 tcttcctgttgttccaaatctttctttgctttctcagc 84
>gb|BI397824.1|BI397824 NXPV_108_B07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_108_B07 5' similar to Arabidopsis
thaliana sequence At1g12270 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 494
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 727 tgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataa 786
|||| ||| ||||| || || |||||||| | ||| ||||| ||||| ||||||||| ||
Sbjct: 472 tgctgcttaaagaattcatttcctttctcccgctcttcatccgccaactttggatcaaaa 413
Query: 787 aactcttgttgctctaactctttctttgctttctcagc 824
|| ||||| || || ||||||||||||||||||||
Sbjct: 412 tcttcctgttgttccaaatctttctttgctttctcagc 375
>gb|DR162548.1|DR162548 RTFE1_18_C01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_18_C01_A029 5', mRNA sequence
Length = 671
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 727 tgctccttgaagaactcgttgcctttctctctctcctcatctgccaattttggatcataa 786
|||| ||| ||||| || || |||||||| | ||| ||||| ||||| ||||||||| ||
Sbjct: 508 tgctgcttaaagaattcatttcctttctcccgctcttcatccgccaactttggatcaaaa 449
Query: 787 aactcttgttgctctaactctttctttgctttctcagc 824
|| ||||| || || ||||||||||||||||||||
Sbjct: 448 tcttcctgttgttccaaatctttctttgctttctcagc 411
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,381
Number of Sequences: 355925
Number of extensions: 105381
Number of successful extensions: 32465
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32370
Number of HSP's gapped (non-prelim): 70
length of query: 932
length of database: 217,277,237
effective HSP length: 19
effective length of query: 913
effective length of database: 210,514,662
effective search space: 192199886406
effective search space used: 192199886406
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)