BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404863.2.1
(672 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR059112.1|DR059112 RTNIT1_15_F05.g1_A029 Roots minus ni... 56 2e-006
gb|DR110850.1|DR110850 RTS1_13_A01.g1_A029 Roots minus sulf... 56 2e-006
gb|DR741980.1|DR741980 RTCU1_1_A06.b1_A029 Roots plus added... 56 2e-006
gb|DR109828.1|DR109828 RTS1_5_F07.b1_A029 Roots minus sulfu... 50 1e-004
gb|DR101537.1|DR101537 STRR1_74_B05.b1_A033 Stem Response R... 42 0.029
gb|DR160314.1|DR160314 RTFE1_5_F12.b1_A029 Roots minus iron... 42 0.029
>gb|DR059112.1|DR059112 RTNIT1_15_F05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_15_F05_A029 5', mRNA sequence
Length = 716
Score = 56.0 bits (28), Expect = 2e-006
Identities = 124/156 (79%)
Strand = Plus / Minus
Query: 106 tggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggat 165
||||| ||||| |||||||| ||||| || |||||||||||| || | || ||||||
Sbjct: 222 tggcattcaacagttggacagtgggctagggcagagaatatgactattttaggtgaggat 163
Query: 166 gttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatc 225
|| ||| |||| ||| ||||||| ||||| ||||| || || || || |||||||||
Sbjct: 162 gtacatataagtgatgagatatacagtaatggtggtgtggtgctacctcataaagagatc 103
Query: 226 aagtcaagcattttgaagcctgagatcgtcatgtga 261
|| || | |||| | ||||||||||| |||||||||
Sbjct: 102 aaatctaacattctcaagcctgagattgtcatgtga 67
>gb|DR110850.1|DR110850 RTS1_13_A01.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_13_A01_A029 5', mRNA sequence
Length = 665
Score = 56.0 bits (28), Expect = 2e-006
Identities = 124/156 (79%)
Strand = Plus / Minus
Query: 106 tggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggat 165
||||| ||||| |||||||| ||||| || |||||||||||| || | || ||||||
Sbjct: 277 tggcattcaacagttggacagtgggctagggcagagaatatgactattttaggtgaggat 218
Query: 166 gttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatc 225
|| ||| |||| ||| ||||||| ||||| ||||| || || || || |||||||||
Sbjct: 217 gtacatataagtgatgagatatacagtaatggtggtgtggtgctacctcataaagagatc 158
Query: 226 aagtcaagcattttgaagcctgagatcgtcatgtga 261
|| || | |||| | ||||||||||| |||||||||
Sbjct: 157 aaatctaacattctcaagcctgagattgtcatgtga 122
>gb|DR741980.1|DR741980 RTCU1_1_A06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_1_A06_A029 3', mRNA sequence
Length = 557
Score = 56.0 bits (28), Expect = 2e-006
Identities = 124/156 (79%)
Strand = Plus / Plus
Query: 106 tggcactcaactgttggacaatgggcacggatagagaatatgaccatcctgggcgaggat 165
||||| ||||| |||||||| ||||| || |||||||||||| || | || ||||||
Sbjct: 250 tggcattcaacagttggacagtgggctagggcagagaatatgactattttaggtgaggat 309
Query: 166 gttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacagaaagagatc 225
|| ||| |||| ||| ||||||| ||||| ||||| || || || || |||||||||
Sbjct: 310 gtacatataagtgatgagatatacagtaatggtggtgtggtgctacctcataaagagatc 369
Query: 226 aagtcaagcattttgaagcctgagatcgtcatgtga 261
|| || | |||| | ||||||||||| |||||||||
Sbjct: 370 aaatctaacattctcaagcctgagattgtcatgtga 405
>gb|DR109828.1|DR109828 RTS1_5_F07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_5_F07_A029 3', mRNA sequence
Length = 584
Score = 50.1 bits (25), Expect = 1e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||| ||||| || || || || ||||| ||||| || |||||| |
Sbjct: 38 gaggtatacagcaatggaggtgtggtccttcctcataaagaaatcaaatccagcattctc 97
Query: 241 aagcctgagatcgtcatgtga 261
||||| || || |||||||||
Sbjct: 98 aagccagaaattgtcatgtga 118
>gb|DR101537.1|DR101537 STRR1_74_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_B05_A033 3', mRNA sequence
Length = 858
Score = 42.1 bits (21), Expect = 0.029
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||| ||||| || || || || ||||| ||||| || || ||| |
Sbjct: 416 gaggtatacagcaatggaggtgtggtccttcctcataaagaaatcaaatccagtattctc 475
Query: 241 aagcctgagatcgtcatgtga 261
||||| || || |||||||||
Sbjct: 476 aagccagaaattgtcatgtga 496
>gb|DR160314.1|DR160314 RTFE1_5_F12.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_F12_A029 3', mRNA sequence
Length = 734
Score = 42.1 bits (21), Expect = 0.029
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||| ||||| || || || || ||||| ||||| || || ||| |
Sbjct: 280 gaggtatacagcaatggaggtgtggtccttcctcataaagaaatcaaatccagtattctc 339
Query: 241 aagcctgagatcgtcatgtga 261
||||| || || |||||||||
Sbjct: 340 aagccagaaattgtcatgtga 360
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,629
Number of Sequences: 355925
Number of extensions: 74629
Number of successful extensions: 19469
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19457
Number of HSP's gapped (non-prelim): 9
length of query: 672
length of database: 217,277,237
effective HSP length: 19
effective length of query: 653
effective length of database: 210,514,662
effective search space: 137466074286
effective search space used: 137466074286
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)