BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404800.2.1
(1228 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clon... 54 1e-005
gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clon... 54 1e-005
gb|CD021305.1|CD021305 NXNV_136_F11_F Nsf Xylem Normal wood... 48 9e-004
gb|AI812857.1|AI812857 20G9 Pine Lambda Zap Xylem library P... 46 0.003
gb|AW290074.1|AW290074 NXNV010C10F Nsf Xylem Normal wood Ve... 46 0.003
gb|AW698291.1|AW698291 NXNV_071_D10_F Nsf Xylem Normal wood... 46 0.003
gb|BF186028.1|BF186028 NXCI_132_C07_F NXCI (Nsf Xylem Compr... 46 0.003
gb|BQ655000.1|BQ655000 NXRV089_A01_F NXRV (Nsf Xylem Root w... 46 0.003
gb|CD026734.1|CD026734 NXNV010C10 Nsf Xylem Normal wood Ver... 46 0.003
gb|CF385119.1|CF385119 RTDR1_2_H01.b1_A015 Loblolly pine ro... 46 0.003
gb|CF385259.1|CF385259 RTDR1_2_H01.g1_A015 Loblolly pine ro... 46 0.003
gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine ro... 46 0.003
gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine r... 46 0.003
gb|CF387392.1|CF387392 RTDR1_12_B04.g1_A015 Loblolly pine r... 46 0.003
gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine r... 46 0.003
gb|CF398398.1|CF398398 RTDS3_12_G12.b1_A022 Drought-stresse... 46 0.003
gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stresse... 46 0.003
gb|CF400142.1|CF400142 RTWW1_3_A06.g1_A015 Well-watered lob... 46 0.003
gb|CF477891.1|CF477891 RTWW3_13_E06.g1_A022 Well-watered lo... 46 0.003
gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered lo... 46 0.003
gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control P... 46 0.003
gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control P... 46 0.003
gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus... 46 0.003
gb|DR161217.1|DR161217 RTFE1_10_C01.g1_A029 Roots minus iro... 46 0.003
gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus adde... 46 0.003
gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt... 46 0.003
gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methy... 46 0.003
gb|AF119225.1|AF119225 Pinus radiata caffeic acid ortho-met... 46 0.003
gb|AI813142.1|AI813142 23D9 Pine Lambda Zap Xylem library P... 40 0.21
>gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clone RS14G09, mRNA sequence
Length = 549
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 414 gctttcttacagttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||| ||||| |||| |||||||||||||| || | ||||||||||||||||
Sbjct: 298 gctttcctacagctcttcagtatcttgatacagtcctcgtcgccccagtcatgca 244
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
Length = 591
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 414 gctttcttacagttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||| ||||| |||| |||||||||||||| || | ||||||||||||||||
Sbjct: 298 gctttcctacagctcttcagtatcttgatacagtcctcgtcgccccagtcatgca 244
>gb|CD021305.1|CD021305 NXNV_136_F11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_136_F11 5' similar to Arabidopsis thaliana
sequence At1g77530 putative caffeic acid
3-O-methyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 165
Score = 48.1 bits (24), Expect = 9e-004
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 98 ttcttgagtatcttgatacagtcntcatcgttccagtcatgca 56
>gb|AI812857.1|AI812857 20G9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 535
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 424 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 382
>gb|AW290074.1|AW290074 NXNV010C10F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010C10 5', mRNA sequence
Length = 450
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 98 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 56
>gb|AW698291.1|AW698291 NXNV_071_D10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_071_D10 5' similar to Arabidopsis thaliana
sequence At4g35160 O-methyltransferase - like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 375
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 98 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 56
>gb|BF186028.1|BF186028 NXCI_132_C07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_132_C07 5' similar to Arabidopsis
thaliana sequence At1g51990 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 258
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 223 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 181
>gb|BQ655000.1|BQ655000 NXRV089_A01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV089_A01 5' similar to Arabidopsis thaliana
sequence At4g35160 O-methyltransferase - like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 398
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 85 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 43
>gb|CD026734.1|CD026734 NXNV010C10 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010C10 5' similar to Arabidopsis thaliana sequence
At4g35160 O-methyltransferase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 450
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 98 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 56
>gb|CF385119.1|CF385119 RTDR1_2_H01.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_H01_A015 3', mRNA
sequence
Length = 491
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 120 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 78
>gb|CF385259.1|CF385259 RTDR1_2_H01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_H01_A015 5', mRNA
sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 578 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 536
>gb|CF385489.1|CF385489 RTDR1_4_C03.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_4_C03_A015 3', mRNA
sequence
Length = 649
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 302 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 260
>gb|CF387289.1|CF387289 RTDR1_12_B04.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 3', mRNA
sequence
Length = 641
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 301 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 259
>gb|CF387392.1|CF387392 RTDR1_12_B04.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_B04_A015 5', mRNA
sequence
Length = 752
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 598 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 556
>gb|CF390447.1|CF390447 RTDR2_19_C10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_19_C10_A021 5', mRNA
sequence
Length = 847
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 488 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 446
>gb|CF398398.1|CF398398 RTDS3_12_G12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_G12_A022 3', mRNA sequence
Length = 443
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 101 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 59
>gb|CF398420.1|CF398420 RTDS3_12_G12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_G12_A022 5', mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 289 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 247
>gb|CF400142.1|CF400142 RTWW1_3_A06.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_A06_A015 5', mRNA sequence
Length = 722
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 522 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 480
>gb|CF477891.1|CF477891 RTWW3_13_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_E06_A022 5', mRNA sequence
Length = 721
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 649 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 607
>gb|CF478857.1|CF478857 RTWW3_15_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_15_E06_A022 5', mRNA sequence
Length = 662
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 344 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 386
>gb|CF665309.1|CF665309 RTCNT1_15_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_E12_A029 3', mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 266 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 224
>gb|CF665472.1|CF665472 RTCNT1_16_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_E12_A029 3', mRNA sequence
Length = 597
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 266 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 224
>gb|CX652953.1|CX652953 COLD1_62_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_B07_A029 5', mRNA sequence
Length = 828
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 336 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 378
>gb|DR161217.1|DR161217 RTFE1_10_C01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_C01_A029 5', mRNA sequence
Length = 784
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 128 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 86
>gb|DR385848.1|DR385848 RTHG1_11_F05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_F05_A029 3', mRNA sequence
Length = 757
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 415 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 373
>gb|U70873.1|PRU70873 Pinus radiata O-methyltransferase (omt) mRNA, complete cds
Length = 1421
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 909 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 867
>gb|U39301.1|PTU39301 Pinus taeda xylem caffeic acid O-methyltransferase (COMT-1) mRNA,
partial cds
Length = 1279
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 902 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 860
>gb|AF119225.1|AF119225 Pinus radiata caffeic acid ortho-methyltransferase (cOMT) gene,
complete cds
Length = 1644
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgca 468
|||||||||||||||||||| || ||||| |||||||||||
Sbjct: 1211 ttcttgagtatcttgatacagtcctcatcgttccagtcatgca 1169
>gb|AI813142.1|AI813142 23D9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 482
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 426 ttcttgagtatcttgataca 445
||||||||||||||||||||
Sbjct: 425 ttcttgagtatcttgataca 406
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,172
Number of Sequences: 355925
Number of extensions: 112172
Number of successful extensions: 26638
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26609
Number of HSP's gapped (non-prelim): 29
length of query: 1228
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1209
effective length of database: 210,514,662
effective search space: 254512226358
effective search space used: 254512226358
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)