BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2404725.2.9
         (1195 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR013147.1|DR013147  HEAT1_17_G07.b1_A029 Root at 37 C fo...    40   0.20 
gb|DR089347.1|DR089347  RTAL1_8_C12.b1_A029 Roots plus added...    40   0.20 

>gb|DR013147.1|DR013147 HEAT1_17_G07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
           HEAT1_17_G07_A029 3', mRNA sequence
          Length = 735

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 ccaacgtcatccgcgccgag 310
           ||||||||||||||||||||
Sbjct: 36  ccaacgtcatccgcgccgag 17



>gb|DR089347.1|DR089347 RTAL1_8_C12.b1_A029 Roots plus added aluminum Pinus taeda cDNA
           clone RTAL1_8_C12_A029 3', mRNA sequence
          Length = 699

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 794 cttctctcgtttccttcttc 813
           ||||||||||||||||||||
Sbjct: 228 cttctctcgtttccttcttc 247



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,486
Number of Sequences: 355925
Number of extensions: 91486
Number of successful extensions: 23152
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23150
Number of HSP's gapped (non-prelim): 2
length of query: 1195
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1176
effective length of database: 210,514,662
effective search space: 247565242512
effective search space used: 247565242512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)