BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF388938.1|CF388938 RTDR2_16_D02.g1_A021 Loblolly pine r... 143 2e-032
gb|CF397251.1|CF397251 RTDS3_2_E11.g1_A022 Drought-stressed... 143 2e-032
gb|CF478175.1|CF478175 RTWW3_19_B10.g1_A022 Well-watered lo... 143 2e-032
gb|CO199748.1|CO199748 GEO2_3_F04.b1_A032 Root gravitropism... 143 2e-032
gb|CO199830.1|CO199830 GEO2_3_F04.g1_A032 Root gravitropism... 143 2e-032
gb|CO364490.1|CO364490 RTK1_16_B03.b1_A029 Roots minus pota... 143 2e-032
gb|CO364567.1|CO364567 RTK1_16_B03.g1_A029 Roots minus pota... 143 2e-032
gb|DR015825.1|DR015825 STRS1_5_H02.g1_A034 Shoot tip pitch ... 143 2e-032
gb|DR052189.1|DR052189 RTCA1_3_A12.b1_A029 Roots minus calc... 143 2e-032
gb|DR052337.1|DR052337 RTCA1_4_A12.b1_A029 Roots minus calc... 143 2e-032
gb|DR053066.1|DR053066 RTCA1_8_G04.g1_A029 Roots minus calc... 143 2e-032
gb|DR056059.1|DR056059 RTCA1_27_G03.g1_A029 Roots minus cal... 143 2e-032
gb|DR060022.1|DR060022 RTNIT1_25_E10.b1_A029 Roots minus ni... 143 2e-032
gb|DR079627.1|DR079627 RTFEPL1_12_B07.g1_A029 Roots plus ad... 143 2e-032
gb|DR163293.1|DR163293 RTFE1_42_C02.b1_A029 Roots minus iro... 143 2e-032
gb|BE049699.1|BE049699 NXNV_142_B11_F Nsf Xylem Normal wood... 133 2e-029
gb|DR050307.1|DR050307 RTBOR1_22_C12.g1_A029 Roots plus add... 133 2e-029
gb|DR181158.1|DR181158 RTMNUT1_37_D12.b2_A029 Roots minus m... 133 2e-029
gb|CO173457.1|CO173457 NDL1_36_H02.b1_A029 Needles control ... 129 3e-028
gb|DR015742.1|DR015742 STRS1_5_H02.b1_A034 Shoot tip pitch ... 129 3e-028
gb|CF669340.1|CF669340 RTCNT1_42_D05.g1_A029 Root control P... 125 4e-027
gb|CO159970.1|CO159970 FLD1_17_G08.b1_A029 Root flooded Pin... 125 4e-027
gb|DR015698.1|DR015698 STRS1_5_C11.b1_A034 Shoot tip pitch ... 125 4e-027
gb|DR055984.1|DR055984 RTCA1_27_G03.b1_A029 Roots minus cal... 125 4e-027
gb|CO171762.1|CO171762 NDL1_24_H10.b1_A029 Needles control ... 111 6e-023
gb|CX714370.1|CX714370 RTPQ1_21_B12.b1_A032 Roots treated w... 111 6e-023
gb|DR050228.1|DR050228 RTBOR1_22_C12.b1_A029 Roots plus add... 92 6e-017
gb|DR048001.1|DR048001 RTBOR1_6_A12.b2_A029 Roots plus adde... 88 9e-016
gb|DR059115.1|DR059115 RTNIT1_15_F08.g1_A029 Roots minus ni... 88 9e-016
gb|DR072608.1|DR072608 RTDK1_27_A04.g1_A029 Roots, dark Pin... 72 5e-011
gb|AW290631.1|AW290631 NXNV044C04F Nsf Xylem Normal wood Ve... 70 2e-010
gb|BF778090.1|BF778090 NXSI_077_A04_F NXSI (Nsf Xylem Side ... 70 2e-010
gb|CD027287.1|CD027287 NXNV044C04 Nsf Xylem Normal wood Ver... 70 2e-010
gb|AI812431.1|AI812431 10H3 Pine Lambda Zap Xylem library P... 62 5e-008
gb|DR054949.1|DR054949 RTCA1_20_D01.g1_A029 Roots minus cal... 50 2e-004
gb|CF665808.1|CF665808 RTCNT1_18_D02.g1_A029 Root control P... 46 0.003
gb|DR692237.1|DR692237 EST1082325 Normalized pine embryo li... 46 0.003
gb|DT637129.1|DT637129 EST1152060 Normalized pine embryo li... 46 0.003
gb|CF477123.1|CF477123 RTWW3_5_A10.g1_A022 Well-watered lob... 44 0.012
gb|CF669288.1|CF669288 RTCNT1_42_D05.b1_A029 Root control P... 44 0.012
gb|CO171829.1|CO171829 NDL1_24_H10.g1_A029 Needles control ... 44 0.012
gb|CO197461.1|CO197461 GEO1_6_C07.g1_A029 Root gravitropism... 44 0.012
gb|DR015780.1|DR015780 STRS1_5_C11.g1_A034 Shoot tip pitch ... 44 0.012
gb|DR048079.1|DR048079 RTBOR1_6_A12.g2_A029 Roots plus adde... 44 0.012
gb|DR052261.1|DR052261 RTCA1_3_A12.g1_A029 Roots minus calc... 44 0.012
gb|DR052413.1|DR052413 RTCA1_4_A12.g1_A029 Roots minus calc... 44 0.012
gb|DR163372.1|DR163372 RTFE1_42_C02.g1_A029 Roots minus iro... 44 0.012
gb|DR181235.1|DR181235 RTMNUT1_37_D12.g2_A029 Roots minus m... 44 0.012
gb|DR687568.1|DR687568 EST1077650 Normalized pine embryo li... 44 0.012
gb|AL750997.1|AL750997 AL750997 RS Pinus pinaster cDNA clon... 42 0.046
gb|BX251682.1|BX251682 BX251682 Pinus pinaster differenciat... 42 0.046
gb|CF668812.1|CF668812 RTCNT1_38_G07.g1_A029 Root control P... 42 0.046
gb|BX679038.1|BX679038 BX679038 RS Pinus pinaster cDNA clon... 42 0.046
gb|CO158246.1|CO158246 FLD1_5_D07.g1_A029 Root flooded Pinu... 42 0.046
gb|CX714678.1|CX714678 RTPQ1_24_E07.g1_A032 Roots treated w... 42 0.046
gb|DR014729.1|DR014729 HEAT1_51_F10.b1_A029 Root at 37 C fo... 42 0.046
gb|DR178089.1|DR178089 RTMNUT1_9_F04.b1_A029 Roots minus mi... 42 0.046
gb|CF395731.1|CF395731 RTDS2_16_E06.g1_A021 Drought-stresse... 40 0.18
gb|CO165048.1|CO165048 FLD1_52_B05.b1_A029 Root flooded Pin... 40 0.18
gb|CO365683.1|CO365683 RTK1_18_C05.g1_A029 Roots minus pota... 40 0.18
gb|DR024777.1|DR024777 STRS1_67_A01.g1_A034 Shoot tip pitch... 40 0.18
gb|DR091320.1|DR091320 RTAL1_20_G02.g1_A029 Roots plus adde... 40 0.18
gb|DR098982.1|DR098982 STRR1_49_H07.b1_A033 Stem Response R... 40 0.18
gb|DT631879.1|DT631879 EST1146810 Normalized pine embryo li... 40 0.18
>gb|CF388938.1|CF388938 RTDR2_16_D02.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_16_D02_A021 5', mRNA
sequence
Length = 693
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 527 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 468
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 467 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 408
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 407 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 348
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 347 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 288
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 287 gcagtcgaccca 276
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 126 agcaccaccatgaccatcgaagactccaaa 97
>gb|CF397251.1|CF397251 RTDS3_2_E11.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_E11_A022 5', mRNA sequence
Length = 640
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 628 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 569
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 568 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 509
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 508 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 449
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 448 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 389
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 388 gcagtcgaccca 377
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 227 agcaccaccatgaccatcgaagactccaaa 198
>gb|CF478175.1|CF478175 RTWW3_19_B10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_B10_A022 5', mRNA sequence
Length = 811
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 470 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 529
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 530 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 589
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 590 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 649
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 650 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 709
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 710 gcagtcgaccca 721
>gb|CO199748.1|CO199748 GEO2_3_F04.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_3_F04_A032 3', mRNA sequence
Length = 828
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 403 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 462
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 463 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 522
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 523 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 582
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 583 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 642
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 643 gcagtcgaccca 654
>gb|CO199830.1|CO199830 GEO2_3_F04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_3_F04_A032 5', mRNA sequence
Length = 836
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 524 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 583
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 584 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 643
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 644 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 703
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 704 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 763
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 764 gcagtcgaccca 775
>gb|CO364490.1|CO364490 RTK1_16_B03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_16_B03_A029 3', mRNA sequence
Length = 888
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 339 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 280
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 279 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 220
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 219 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 160
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 159 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 100
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 99 gcagtcgaccca 88
>gb|CO364567.1|CO364567 RTK1_16_B03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_16_B03_A029 5', mRNA sequence
Length = 806
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 578 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 519
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 518 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 459
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 458 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 399
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 398 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 339
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 338 gcagtcgaccca 327
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 177 agcaccaccatgaccatcgaagactccaaa 148
>gb|DR015825.1|DR015825 STRS1_5_H02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_H02_A034 5', mRNA sequence
Length = 725
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 416 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 475
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 476 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 535
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 536 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 595
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 596 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 655
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 656 gcagtcgaccca 667
>gb|DR052189.1|DR052189 RTCA1_3_A12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_A12_A029 3', mRNA sequence
Length = 825
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 260 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 201
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 200 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 141
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 140 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 81
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 80 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 21
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 20 gcagtcgaccca 9
>gb|DR052337.1|DR052337 RTCA1_4_A12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_A12_A029 3', mRNA sequence
Length = 855
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 290 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 231
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 230 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 171
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 170 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 111
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 110 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 51
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 50 gcagtcgaccca 39
>gb|DR053066.1|DR053066 RTCA1_8_G04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_G04_A029 5', mRNA sequence
Length = 632
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 624 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 565
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 564 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 505
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 504 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 445
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 444 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 385
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 384 gcagtcgaccca 373
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 223 agcaccaccatgaccatcgaagactccaaa 194
>gb|DR056059.1|DR056059 RTCA1_27_G03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_27_G03_A029 5', mRNA sequence
Length = 665
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 521 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 462
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 461 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 402
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 401 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 342
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 341 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 282
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 281 gcagtcgaccca 270
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 120 agcaccaccatgaccatcgaagactccaaa 91
>gb|DR060022.1|DR060022 RTNIT1_25_E10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_25_E10_A029 3', mRNA sequence
Length = 790
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 383 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 324
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 323 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 264
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 263 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 204
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 203 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 144
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 143 gcagtcgaccca 132
>gb|DR079627.1|DR079627 RTFEPL1_12_B07.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_12_B07_A029 5', mRNA sequence
Length = 845
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 482 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 541
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 542 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 601
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 602 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 661
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 662 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 721
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 722 gcagtcgaccca 733
>gb|DR163293.1|DR163293 RTFE1_42_C02.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_C02_A029 3', mRNA sequence
Length = 854
Score = 143 bits (72), Expect = 2e-032
Identities = 207/252 (82%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 339 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 280
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 279 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 220
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 219 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 160
Query: 687 gccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgat 746
|| || || || ||||||||||| || | | ||||| || ||||| || |||||||||
Sbjct: 159 gctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgat 100
Query: 747 gcagttgaccca 758
||||| ||||||
Sbjct: 99 gcagtcgaccca 88
>gb|BE049699.1|BE049699 NXNV_142_B11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_142_B11 5' similar to Arabidopsis thaliana
sequence At4g31750 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 331
Score = 133 bits (67), Expect = 2e-029
Identities = 169/203 (83%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 237 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 178
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 177 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 118
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 117 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 58
Query: 687 gccctagagtcaccaacatttgc 709
|| || || || |||||||||||
Sbjct: 57 gctctcgaatccccaacatttgc 35
>gb|DR050307.1|DR050307 RTBOR1_22_C12.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_22_C12_A029 5', mRNA sequence
Length = 793
Score = 133 bits (67), Expect = 2e-029
Identities = 199/243 (81%)
Strand = Plus / Minus
Query: 516 tttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgccatgtt 575
||||| ||| |||||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 793 tttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaacacgccatgta 734
Query: 576 cctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatca 635
|| |||||||| ||||| ||||||||||| ||||| || || ||||| ||||||||||
Sbjct: 733 ccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtcagtttgattt 674
Query: 636 ggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgatagccctagag 695
|| || |||||| |||| ||||| ||| ||||| |||||||||| | ||| || ||
Sbjct: 673 ggtttatgatcccgagaaagagcaacagcttttccagccctgcatataacagctctcgaa 614
Query: 696 tcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgatgcagttgac 755
|| ||||||||||| || | | ||||| || ||||| || |||||||||||||| |||
Sbjct: 613 tccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgatgcagtcgac 554
Query: 756 cca 758
|||
Sbjct: 553 cca 551
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 401 agcaccaccatgaccatcgaagactccaaa 372
>gb|DR181158.1|DR181158 RTMNUT1_37_D12.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_37_D12_A029 3', mRNA sequence
Length = 792
Score = 133 bits (67), Expect = 2e-029
Identities = 169/203 (83%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 223 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 164
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 163 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 104
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| | |
Sbjct: 103 gtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataaca 44
Query: 687 gccctagagtcaccaacatttgc 709
|| || || || |||||||||||
Sbjct: 43 gctctcgaatccccaacatttgc 21
>gb|CO173457.1|CO173457 NDL1_36_H02.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_36_H02_A029 3', mRNA sequence
Length = 591
Score = 129 bits (65), Expect = 3e-028
Identities = 207/253 (81%), Gaps = 1/253 (0%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 179 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaacc 238
Query: 567 -cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatc 625
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| ||
Sbjct: 239 acgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtc 298
Query: 626 agtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgat 685
|||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| |
Sbjct: 299 agtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataac 358
Query: 686 agccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttga 745
||| || || || ||||||||||| || | | ||||| || ||||| || ||||||||
Sbjct: 359 agctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttga 418
Query: 746 tgcagttgaccca 758
|||||| ||||||
Sbjct: 419 tgcagtcgaccca 431
>gb|DR015742.1|DR015742 STRS1_5_H02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_H02_A034 3', mRNA sequence
Length = 811
Score = 129 bits (65), Expect = 3e-028
Identities = 207/253 (81%), Gaps = 1/253 (0%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccacc-aac 565
||||| |||||||| ||| |||||||||||||||||||||||||||| || || || |||
Sbjct: 9 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaaccccccccaac 68
Query: 566 gcgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatc 625
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| ||
Sbjct: 69 acgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtc 128
Query: 626 agtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgat 685
|||||||| || || |||||| |||| ||||| ||| ||||| |||||||||| |
Sbjct: 129 agtttgatttggtttatgatcccgagaaagagcaacagcttttccagccctgcatataac 188
Query: 686 agccctagagtcaccaacatttgcgacgaagagacgatcaccaacaagtacagcagttga 745
||| || || || ||||||||||| || | | ||||| || ||||| || ||||||||
Sbjct: 189 agctctcgaatccccaacatttgcaaccagcaatcgatcccctacaagaactgcagttga 248
Query: 746 tgcagttgaccca 758
|||||| ||||||
Sbjct: 249 tgcagtcgaccca 261
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 411 agcaccaccatgaccatcgaagactccaaa 440
>gb|CF669340.1|CF669340 RTCNT1_42_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_42_D05_A029 5', mRNA sequence
Length = 722
Score = 125 bits (63), Expect = 4e-027
Identities = 168/203 (82%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 500 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 559
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 560 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 619
Query: 627 gtttgatcaggcttgtgatcctttgaaacagcaatagcatttccttccctgcatatgata 686
||||||| || || |||||| |||| ||||| ||| ||| | |||||||||| | |
Sbjct: 620 gtttgatttggtttatgatcccgagaaagagcaacagctttttcagccctgcatataaca 679
Query: 687 gccctagagtcaccaacatttgc 709
|| || || || |||||||||||
Sbjct: 680 gctctcgaatccccaacatttgc 702
>gb|CO159970.1|CO159970 FLD1_17_G08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_17_G08_A029 3', mRNA sequence
Length = 737
Score = 125 bits (63), Expect = 4e-027
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 172 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 113
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 112 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 53
Query: 627 gtttgat 633
|||||||
Sbjct: 52 gtttgat 46
>gb|DR015698.1|DR015698 STRS1_5_C11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C11_A034 3', mRNA sequence
Length = 706
Score = 125 bits (63), Expect = 4e-027
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 141 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 82
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 81 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 22
Query: 627 gtttgat 633
|||||||
Sbjct: 21 gtttgat 15
>gb|DR055984.1|DR055984 RTCA1_27_G03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_27_G03_A029 3', mRNA sequence
Length = 650
Score = 125 bits (63), Expect = 4e-027
Identities = 111/127 (87%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 142 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 83
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaatacgctgccgctcatca 626
|||||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 82 cgccatgtaccagcccacataacaaatcctccagcatcctcaattcgttgacgctcgtca 23
Query: 627 gtttgat 633
|||||||
Sbjct: 22 gtttgat 16
>gb|CO171762.1|CO171762 NDL1_24_H10.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_24_H10_A029 3', mRNA sequence
Length = 670
Score = 111 bits (56), Expect = 6e-023
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 105 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 46
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
|||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 45 cgccatgtaccagcccacataacaaatcctccagcatcctcaat 2
>gb|CX714370.1|CX714370 RTPQ1_21_B12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_21_B12_A032 3', mRNA sequence
Length = 675
Score = 111 bits (56), Expect = 6e-023
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 569 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 628
Query: 567 cgccatgttcctgcccacatcacaaaacctccagcatcttcaat 610
|||||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 629 cgccatgtaccagcccacataacaaatcctccagcatcctcaat 672
>gb|DR050228.1|DR050228 RTBOR1_22_C12.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_22_C12_A029 3', mRNA sequence
Length = 659
Score = 91.7 bits (46), Expect = 6e-017
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 88 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 29
Query: 567 cgccatgttcctgcccacatcacaaa 592
|||||||| || |||||||| |||||
Sbjct: 28 cgccatgtaccagcccacataacaaa 3
>gb|DR048001.1|DR048001 RTBOR1_6_A12.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_A12_A029 3', mRNA sequence
Length = 643
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 82 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 23
Query: 567 cgccatgttcctgcccacat 586
|||||||| || ||||||||
Sbjct: 22 cgccatgtaccagcccacat 3
>gb|DR059115.1|DR059115 RTNIT1_15_F08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_15_F08_A029 5', mRNA sequence
Length = 637
Score = 87.7 bits (44), Expect = 9e-016
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacg 566
||||| |||||||| ||| |||||||||||||||||||||||||||| || || |||||
Sbjct: 557 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaagaacccccccaaca 616
Query: 567 cgccatgttcctgcccacat 586
|||||||| || ||||||||
Sbjct: 617 cgccatgtaccagcccacat 636
>gb|DR072608.1|DR072608 RTDK1_27_A04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_27_A04_A029 5', mRNA sequence
Length = 697
Score = 71.9 bits (36), Expect = 5e-011
Identities = 144/180 (80%)
Strand = Plus / Minus
Query: 579 gcccacatcacaaaacctccagcatcttcaatacgctgccgctcatcagtttgatcaggc 638
|||||||| ||||| ||||||||||| ||||| || || ||||| |||||||||| ||
Sbjct: 690 gcccacataacaaatcctccagcatcctcaattcgttgacgctcgtcagtttgatttggt 631
Query: 639 ttgtgatcctttgaaacagcaatagcatttccttccctgcatatgatagccctagagtca 698
|| |||||| |||| ||||| ||| ||||| |||||||||| | ||| || || ||
Sbjct: 630 ttatgatcccgagaaagagcaacagcttttccagccctgcatataacagctctcgaatcc 571
Query: 699 ccaacatttgcgacgaagagacgatcaccaacaagtacagcagttgatgcagttgaccca 758
||||||||||| || | | ||||| || ||||| || |||||||||||||| ||||||
Sbjct: 570 ccaacatttgcaaccagcaatcgatcccctacaagaactgcagttgatgcagtcgaccca 511
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 361 agcaccaccatgaccatcgaagactccaaa 332
>gb|AW290631.1|AW290631 NXNV044C04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044C04 5', mRNA sequence
Length = 382
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaag 553
||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 53 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaag 7
>gb|BF778090.1|BF778090 NXSI_077_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_077_A04 5' similar to Arabidopsis thaliana
sequence At4g31750 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 238
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaag 553
||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 62 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaag 16
>gb|CD027287.1|CD027287 NXNV044C04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044C04 5' similar to Arabidopsis thaliana sequence
At4g31750 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 382
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaag 553
||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 53 acatactgctttaaaagtctgtcaccaaaagcacgcgaaacagcaag 7
>gb|AI812431.1|AI812431 10H3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 617
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 507 acatattgctttaagagtttgtcaccaaaagcacgcgaaacagcaag 553
||||| |||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 54 acatactgctttaaaagtctgtcacgaaaagcacgcgaaacagcaag 8
>gb|DR054949.1|DR054949 RTCA1_20_D01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_20_D01_A029 5', mRNA sequence
Length = 529
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 546 acagcaagtacaccaccaacgcgccatgttcctgcccacat 586
|||||||||||||| ||||||||||||| || ||||||||
Sbjct: 486 acagcaagtacacctgcaacgcgccatgtgccagcccacat 526
>gb|CF665808.1|CF665808 RTCNT1_18_D02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_D02_A029 5', mRNA sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 888 acatactctgctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatc 947
||||| |||||| | | |||||||||||| |||||||| || ||||| | ||||||||
Sbjct: 581 acataatctgctgcttcagcaccaccatggccatcaaataccccaaacaagccaactatt 522
Query: 948 tggccatcaac 958
|| ||||||||
Sbjct: 521 tgaccatcaac 511
>gb|DR692237.1|DR692237 EST1082325 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADJ75 3' end, mRNA sequence
Length = 720
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 888 acatactctgctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatc 947
||||| |||||| | | |||||||||||| |||||||| || ||||| | ||||||||
Sbjct: 561 acataatctgctgcttcagcaccaccatggccatcaaataccccaaacaagccaactatt 502
Query: 948 tggccatcaac 958
|| ||||||||
Sbjct: 501 tgaccatcaac 491
>gb|DT637129.1|DT637129 EST1152060 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH006 3' end, mRNA sequence
Length = 865
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 888 acatactctgctaccttagcaccaccatgaccatcaaaaactccaaaaagaccaactatc 947
||||| |||||| | | |||||||||||| |||||||| || ||||| | ||||||||
Sbjct: 561 acataatctgctgcttcagcaccaccatggccatcaaataccccaaacaagccaactatt 502
Query: 948 tggccatcaac 958
|| ||||||||
Sbjct: 501 tgaccatcaac 491
>gb|CF477123.1|CF477123 RTWW3_5_A10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_A10_A022 5', mRNA sequence
Length = 707
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 529 agcaccaccatgaccatcgaagactccaaa 500
>gb|CF669288.1|CF669288 RTCNT1_42_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_42_D05_A029 3', mRNA sequence
Length = 652
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 305 agcaccaccatgaccatcgaagactccaaa 334
>gb|CO171829.1|CO171829 NDL1_24_H10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_24_H10_A029 5', mRNA sequence
Length = 767
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 493 agcaccaccatgaccatcgaagactccaaa 464
Score = 40.1 bits (20), Expect = 0.18
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 651 gaaacagcaatagcatttccttccctgcatatgatagccctagagtcaccaacatttgcg 710
|||| ||||| ||| ||||| |||||||||| | ||| || || || |||||||||||
Sbjct: 750 gaaagagcaacagcttttccagccctgcatataacagctctcgaatccccaacatttgca 691
Query: 711 acgaagagacgatcaccaacaagtacagcagttgatgcagttgaccca 758
|| | | ||||| || ||||| || |||||||||||||| ||||||
Sbjct: 690 accagcaatcgatcccctacaagaactgcagttgatgcagtcgaccca 643
>gb|CO197461.1|CO197461 GEO1_6_C07.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_6_C07_A029 5', mRNA sequence
Length = 815
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 646 agcaccaccatgaccatcgaagactccaaa 617
>gb|DR015780.1|DR015780 STRS1_5_C11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C11_A034 5', mRNA sequence
Length = 880
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 684 agcaccaccatgaccatcgaagactccaaa 655
>gb|DR048079.1|DR048079 RTBOR1_6_A12.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_A12_A029 5', mRNA sequence
Length = 746
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 685 agcaccaccatgaccatcgaagactccaaa 656
>gb|DR052261.1|DR052261 RTCA1_3_A12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_A12_A029 5', mRNA sequence
Length = 818
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 693 agcaccaccatgaccatcgaagactccaaa 664
>gb|DR052413.1|DR052413 RTCA1_4_A12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_A12_A029 5', mRNA sequence
Length = 828
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 694 agcaccaccatgaccatcgaagactccaaa 665
>gb|DR163372.1|DR163372 RTFE1_42_C02.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_C02_A029 5', mRNA sequence
Length = 855
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 748 agcaccaccatgaccatcgaagactccaaa 719
>gb|DR181235.1|DR181235 RTMNUT1_37_D12.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_37_D12_A029 5', mRNA sequence
Length = 692
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 684 agcaccaccatgaccatcgaagactccaaa 655
>gb|DR687568.1|DR687568 EST1077650 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU06 3' end, mRNA sequence
Length = 799
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 905 agcaccaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| || ||||||||
Sbjct: 723 agcaccaccatgaccatcgaagactccaaa 694
>gb|AL750997.1|AL750997 AL750997 RS Pinus pinaster cDNA clone RS02H08 similar to
PHOSPHATASE 2C, mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.046
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 909 ccaccatgaccatcaaaaactccaaaaagaccaactatctggccatcaa 957
|||||||| ||||||||||| ||||||| ||||| || || |||||||
Sbjct: 150 ccaccatggccatcaaaaaccccaaaaaagccaaccatgtgaccatcaa 102
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,589
Number of Sequences: 355925
Number of extensions: 140589
Number of successful extensions: 31530
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31398
Number of HSP's gapped (non-prelim): 110
length of query: 1074
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1055
effective length of database: 210,514,662
effective search space: 222092968410
effective search space used: 222092968410
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)