BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.1
(1175 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nit... 90 2e-016
gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo li... 84 1e-014
gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo li... 84 1e-014
gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciat... 42 0.051
gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library P... 40 0.20
gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side ... 40 0.20
gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stresse... 40 0.20
gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control P... 40 0.20
gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control P... 40 0.20
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 40 0.20
gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control P... 40 0.20
gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblo... 40 0.20
gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblo... 40 0.20
gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus... 40 0.20
gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblo... 40 0.20
gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblo... 40 0.20
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 40 0.20
gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus m... 40 0.20
gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo li... 40 0.20
gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo li... 40 0.20
gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus adde... 40 0.20
gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from lobl... 40 0.20
gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from lobl... 40 0.20
dbj|BD236521.1| Materials and method for modification of pl... 40 0.20
>gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_1_H08_A029 5', mRNA sequence
Length = 660
Score = 89.7 bits (45), Expect = 2e-016
Identities = 111/133 (83%)
Strand = Plus / Plus
Query: 25 cagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctcatccta 84
|||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||||
Sbjct: 524 cagatcctgagtggaaaataattttgctaaggtatttcaatcctgttggagctcatccta 583
Query: 85 gtggatatcttggcgaggacccacgaggaattcccaacaatcttatgccctatgttcagc 144
|||||| | |||| || || || || |||||||| |||||||| ||||| | |||||| |
Sbjct: 584 gtggatttattggtgaagatcctcggggaattccaaacaatctcatgccatttgttcaac 643
Query: 145 aagttgcggttgg 157
|||| || |||||
Sbjct: 644 aagtcgcagttgg 656
>gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE31 3' end, mRNA sequence
Length = 547
Score = 83.8 bits (42), Expect = 1e-014
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 25 cagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctcatccta 84
|||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||||
Sbjct: 231 cagatcctgactggaaaataattttgctaaggtatttcaatcctgttggagctcatccta 290
Query: 85 gtggatatcttggcgaggacccacgaggaattcccaacaatcttatgccctatgttca 142
|||||| | |||| || || || || |||||||| |||||||| ||||| | ||||||
Sbjct: 291 gtggatttattggtgaagatcctcggggaattccaaacaatctcatgccatttgttca 348
>gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU78 3' end, mRNA sequence
Length = 808
Score = 83.8 bits (42), Expect = 1e-014
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 25 cagatcctgaatggaagatcattttacttaggtacttcaatccagttggtgctcatccta 84
|||||||||| ||||| || ||||| || ||||| |||||||| ||||| ||||||||||
Sbjct: 543 cagatcctgactggaaaataattttgctaaggtatttcaatcctgttggagctcatccta 602
Query: 85 gtggatatcttggcgaggacccacgaggaattcccaacaatcttatgccctatgttca 142
|||||| | |||| || || || || |||||||| |||||||| ||||| | ||||||
Sbjct: 603 gtggatttattggtgaagatcctcggggaattccaaacaatctcatgccatttgttca 660
>gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciating xylem adult Pinus
pinaster cDNA clone PP005G04, mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.051
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgga 89
||||| || ||||||||||| |||||||| ||||| || ||||||
Sbjct: 17 attttgctgaggtacttcaacccagttggagctcacccaagtgga 61
>gb|AI812993.1|AI812993 2E11 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 539 attttgctgaggtacttcaacccagttggagctcacccaagtgg 582
>gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda
cDNA clone NXSI_144_A03 5' similar to Arabidopsis
thaliana sequence At1g12780 uridine diphosphate glucose
epimerase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 22 attttgctgaggtacttcaacccagttggagctcacccaagtgg 65
>gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 5', mRNA sequence
Length = 781
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 537 attttgctgaggtacttcaacccagttggagctcacccaagtgg 580
>gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 5', mRNA sequence
Length = 801
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 564 attttgctgaggtacttcaacccagttggagctcacccaagtgg 607
>gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 5', mRNA sequence
Length = 800
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 562 attttgctgaggtacttcaacccagttggagctcacccaagtgg 605
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 180 attttgctgaggtacttcaacccagttggagctcacccaagtgg 223
>gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_E08_A029 5', mRNA sequence
Length = 810
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 569 attttgctgaggtacttcaacccagttggagctcacccaagtgg 612
>gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICME12 5' end, mRNA sequence
Length = 852
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 606 attttgctgaggtacttcaacccagttggagctcacccaagtgg 649
>gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAE04 5' end, mRNA sequence
Length = 906
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 608 attttgctgaggtacttcaacccagttggagctcacccaagtgg 651
>gb|CX648556.1|CX648556 COLD1_29_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 5', mRNA sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 600 attttgctgaggtacttcaacccagttggagctcacccaagtgg 643
>gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH331 5' end, mRNA sequence
Length = 925
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 608 attttgctgaggtacttcaacccagttggagctcacccaagtgg 651
>gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHV83 5' end, mRNA sequence
Length = 880
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 608 attttgctgaggtacttcaacccagttggagctcacccaagtgg 651
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 189 attttgctgaggtacttcaacccagttggagctcacccaagtgg 232
>gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus micronutrients Pinus taeda
cDNA clone RTMNUT1_10_G12_A029 3', mRNA sequence
Length = 777
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 9 attttgctgaggtacttcaacccagttggagctcacccaagtgg 52
>gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC779 3' end, mRNA sequence
Length = 943
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 622 attttgctgaggtacttcaacccagttggagctcacccaagtgg 665
>gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD946 3' end, mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 599 attttgctgaggtacttcaacccagttggagctcacccaagtgg 642
>gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 5', mRNA sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 275 attttgctgaggtacttcaacccagttggagctcacccaagtgg 318
>gb|DT626458.1|DT626458 EST1158382 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAB05 5' end, mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 608 attttgctgaggtacttcaacccagttggagctcacccaagtgg 651
>gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR51 5' end, mRNA sequence
Length = 942
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 608 attttgctgaggtacttcaacccagttggagctcacccaagtgg 651
>dbj|BD236521.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 323
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 45 attttacttaggtacttcaatccagttggtgctcatcctagtgg 88
||||| || ||||||||||| |||||||| ||||| || |||||
Sbjct: 95 attttgctgaggtacttcaacccagttggagctcacccaagtgg 138
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,528
Number of Sequences: 355925
Number of extensions: 121528
Number of successful extensions: 34593
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34541
Number of HSP's gapped (non-prelim): 52
length of query: 1175
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1156
effective length of database: 210,514,662
effective search space: 243354949272
effective search space used: 243354949272
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)