BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276343.2.2
(1340 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO158240.1|CO158240 FLD1_5_C06.g1_A029 Root flooded Pinu... 100 3e-019
gb|CO163167.1|CO163167 FLD1_39_H09.g1_A029 Root flooded Pin... 100 3e-019
gb|CO166163.1|CO166163 FLD1_59_F08.g1_A029 Root flooded Pin... 100 3e-019
gb|CO166517.1|CO166517 FLD1_62_C11.g1_A029 Root flooded Pin... 100 3e-019
gb|CO167589.1|CO167589 FLD1_69_H02.g1_A029 Root flooded Pin... 100 3e-019
gb|CO201857.1|CO201857 RTCNT2_8_D01.g1_A029 Root control 2 ... 100 3e-019
gb|CO368449.1|CO368449 RTK1_40_E08.g1_A029 Roots minus pota... 100 3e-019
gb|DR163410.1|DR163410 RTFE1_42_F07.g1_A029 Roots minus iro... 100 3e-019
gb|DR166548.1|DR166548 RTPHOS1_12_F06.g2_A029 Roots minus p... 100 3e-019
gb|DR385989.1|DR385989 RTHG1_12_D09.b1_A029 Roots plus adde... 100 3e-019
gb|DR745545.1|DR745545 RTCU1_30_A10.g1_A029 Roots plus adde... 86 4e-015
emb|X62433.1|PSALB1A P.strobus mRNA for albumin 1 84 2e-014
gb|CO159257.1|CO159257 FLD1_12_B04.g1_A029 Root flooded Pin... 76 4e-012
gb|CX652227.1|CX652227 COLD1_57_F07.g1_A029 Root cold Pinus... 72 6e-011
gb|DR070693.1|DR070693 RTDK1_15_B04.b1_A029 Roots, dark Pin... 72 6e-011
gb|DR117316.1|DR117316 RTMG1_6_F04.b1_A029 Roots minus magn... 72 6e-011
gb|AW869841.1|AW869841 NXNV_122_B05_F Nsf Xylem Normal wood... 58 1e-006
gb|CF672223.1|CF672223 RTCNT1_62_E01.b1_A029 Root control P... 58 1e-006
gb|CO362574.1|CO362574 RTK1_4_A08.g1_A029 Roots minus potas... 58 1e-006
gb|CX652097.1|CX652097 COLD1_56_H09.g1_A029 Root cold Pinus... 58 1e-006
gb|DR388466.1|DR388466 RTHG1_28_A08.g1_A029 Roots plus adde... 58 1e-006
gb|BM158194.1|BM158194 NXLV_030_G01_F NXLV (Nsf Xylem Late ... 54 2e-005
gb|AL751325.1|AL751325 AL751325 RS Pinus pinaster cDNA clon... 52 6e-005
gb|BE582124.1|BE582124 NXCI_029_D02_F NXCI (Nsf Xylem Compr... 52 6e-005
gb|BF185997.1|BF185997 NXCI_114_G12_F NXCI (Nsf Xylem Compr... 52 6e-005
gb|BF517951.1|BF517951 NXSI_032_A06_F NXSI (Nsf Xylem Side ... 52 6e-005
gb|BG832985.1|BG832985 NXPV_084_E10_F NXPV (Nsf Xylem Plani... 52 6e-005
gb|CF389256.1|CF389256 RTDR2_9_F06.g1_A021 Loblolly pine ro... 52 6e-005
gb|CF390304.1|CF390304 RTDR2_18_F08.g1_A021 Loblolly pine r... 52 6e-005
gb|CF396170.1|CF396170 RTDS2_15_E04.g1_A021 Drought-stresse... 52 6e-005
gb|CF397315.1|CF397315 RTDS3_2_E10.g1_A022 Drought-stressed... 52 6e-005
gb|BX667561.1|BX667561 BX667561 RN Pinus pinaster cDNA clon... 52 6e-005
gb|BX681676.1|BX681676 BX681676 RS Pinus pinaster cDNA clon... 52 6e-005
gb|CR394208.1|CR394208 CR394208 RN Pinus pinaster cDNA clon... 52 6e-005
gb|CR394289.1|CR394289 CR394289 RN Pinus pinaster cDNA clon... 52 6e-005
gb|CO158586.1|CO158586 FLD1_7_H03.g1_A029 Root flooded Pinu... 52 6e-005
gb|CO161144.1|CO161144 FLD1_27_A03.b1_A029 Root flooded Pin... 52 6e-005
gb|CO161225.1|CO161225 FLD1_27_A03.g1_A029 Root flooded Pin... 52 6e-005
gb|CO163320.1|CO163320 FLD1_40_G09.g1_A029 Root flooded Pin... 52 6e-005
gb|CO163756.1|CO163756 FLD1_43_C09.g1_A029 Root flooded Pin... 52 6e-005
gb|CO164396.1|CO164396 FLD1_47_F05.g1_A029 Root flooded Pin... 52 6e-005
gb|CO173931.1|CO173931 NDL1_40_B03.g1_A029 Needles control ... 52 6e-005
gb|CO201780.1|CO201780 RTCNT2_8_D01.b1_A029 Root control 2 ... 52 6e-005
gb|CX714873.1|CX714873 RTPQ1_27_F11.g1_A032 Roots treated w... 52 6e-005
gb|DR017788.1|DR017788 STRS1_18_B05.g1_A034 Shoot tip pitch... 52 6e-005
gb|DR020102.1|DR020102 STRS1_34_D07.g1_A034 Shoot tip pitch... 52 6e-005
gb|DR024110.1|DR024110 STRS1_62_A08.g1_A034 Shoot tip pitch... 52 6e-005
gb|DR024259.1|DR024259 STRS1_63_D11.g1_A034 Shoot tip pitch... 52 6e-005
gb|DR025202.1|DR025202 STRS1_70_F01.b1_A034 Shoot tip pitch... 52 6e-005
gb|DR025289.1|DR025289 STRS1_70_F01.g1_A034 Shoot tip pitch... 52 6e-005
gb|DR056251.1|DR056251 RTCA1_29_B12.b1_A029 Roots minus cal... 52 6e-005
gb|DR070300.1|DR070300 RTDK1_12_A12.g1_A029 Roots, dark Pin... 52 6e-005
gb|DR088780.1|DR088780 RTAL1_4_B05.g1_A029 Roots plus added... 52 6e-005
gb|DR117401.1|DR117401 RTMG1_6_F04.g1_A029 Roots minus magn... 52 6e-005
gb|DR161224.1|DR161224 RTFE1_10_C08.g1_A029 Roots minus iro... 52 6e-005
gb|CO167507.1|CO167507 FLD1_69_H02.b1_A029 Root flooded Pin... 50 2e-004
gb|CF395526.1|CF395526 RTDS2_12_H09.b1_A021 Drought-stresse... 46 0.004
gb|CF472216.1|CF472216 RTDS1_5_E07.g1_A015 Drought-stressed... 46 0.004
gb|CF669610.1|CF669610 RTCNT1_45_B03.b1_A029 Root control P... 46 0.004
gb|CO158172.1|CO158172 FLD1_5_C06.b1_A029 Root flooded Pinu... 46 0.004
gb|CO158509.1|CO158509 FLD1_7_H03.b1_A029 Root flooded Pinu... 46 0.004
gb|CO159757.1|CO159757 FLD1_15_D12.g1_A029 Root flooded Pin... 46 0.004
gb|CO163237.1|CO163237 FLD1_40_G09.b1_A029 Root flooded Pin... 46 0.004
gb|CO163678.1|CO163678 FLD1_43_C09.b1_A029 Root flooded Pin... 46 0.004
gb|CO164322.1|CO164322 FLD1_47_F05.b1_A029 Root flooded Pin... 46 0.004
gb|CO166094.1|CO166094 FLD1_59_F08.b1_A029 Root flooded Pin... 46 0.004
gb|CO166336.1|CO166336 FLD1_61_E12.b1_A029 Root flooded Pin... 46 0.004
gb|CO166447.1|CO166447 FLD1_62_C11.b1_A029 Root flooded Pin... 46 0.004
gb|CO166715.1|CO166715 FLD1_64_B03.b1_A029 Root flooded Pin... 46 0.004
gb|CO167579.1|CO167579 FLD1_69_G04.g1_A029 Root flooded Pin... 46 0.004
gb|CO201024.1|CO201024 RTCNT2_3_D10.b1_A029 Root control 2 ... 46 0.004
gb|CO362501.1|CO362501 RTK1_4_A08.b1_A029 Roots minus potas... 46 0.004
gb|CO364889.1|CO364889 RTK1_22_H11.b1_A029 Roots minus pota... 46 0.004
gb|CO368213.1|CO368213 RTK1_39_G02.b1_A029 Roots minus pota... 46 0.004
gb|CO368367.1|CO368367 RTK1_40_E08.b1_A029 Roots minus pota... 46 0.004
gb|CO368503.1|CO368503 RTK1_41_B07.b1_A029 Roots minus pota... 46 0.004
gb|DR017713.1|DR017713 STRS1_18_B05.b1_A034 Shoot tip pitch... 46 0.004
gb|DR020027.1|DR020027 STRS1_34_D07.b1_A034 Shoot tip pitch... 46 0.004
gb|DR024056.1|DR024056 STRS1_62_A08.b1_A034 Shoot tip pitch... 46 0.004
gb|DR024217.1|DR024217 STRS1_63_D11.b1_A034 Shoot tip pitch... 46 0.004
gb|DR054282.1|DR054282 RTCA1_16_H12.b1_A029 Roots minus cal... 46 0.004
gb|DR070214.1|DR070214 RTDK1_12_A12.b1_A029 Roots, dark Pin... 46 0.004
gb|DR072235.1|DR072235 RTDK1_25_A07.b1_A029 Roots, dark Pin... 46 0.004
gb|DR112321.1|DR112321 RTS1_27_H05.b1_A029 Roots minus sulf... 46 0.004
gb|DR180867.1|DR180867 RTMNUT1_35_H03.b1_A029 Roots minus m... 46 0.004
gb|DR385209.1|DR385209 RTHG1_7_G03.b1_A029 Roots plus added... 46 0.004
gb|DR385295.1|DR385295 RTHG1_7_G03.g1_A029 Roots plus added... 46 0.004
gb|BI077251.1|BI077251 NXPV_094_G05_F NXPV (Nsf Xylem Plani... 44 0.015
gb|CD022143.1|CD022143 NXPV_014_E03_F NXPV (Nsf Xylem Plani... 42 0.058
>gb|CO158240.1|CO158240 FLD1_5_C06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_5_C06_A029 5', mRNA sequence
Length = 692
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 123 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 182
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 183 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 242
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 243 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 302
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 303 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 362
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 363 tccaattggatgaagaat 380
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 42 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 94
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 576 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 625
>gb|CO163167.1|CO163167 FLD1_39_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_H09_A029 5', mRNA sequence
Length = 835
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 180 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 239
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 240 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 299
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 300 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 359
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 360 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 419
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 420 tccaattggatgaagaat 437
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 99 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 151
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 633 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 682
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 727 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 775
>gb|CO166163.1|CO166163 FLD1_59_F08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_F08_A029 5', mRNA sequence
Length = 806
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 119 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 178
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 179 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 238
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 239 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 298
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 299 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 358
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 359 tccaattggatgaagaat 376
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 99 tcatgcatctgatccagctgaagctga 125
|||||||||||||||||||||||||||
Sbjct: 64 tcatgcatctgatccagctgaagctga 90
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 572 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 621
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgt 839
||||| || |||||||||||||| |||||||| |||||
Sbjct: 767 tatgtatgtggtgatgccaagggcatggctagggatgt 804
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 666 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 714
>gb|CO166517.1|CO166517 FLD1_62_C11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_62_C11_A029 5', mRNA sequence
Length = 750
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 193 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 252
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 253 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 312
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 313 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 372
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 373 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 432
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 433 tccaattggatgaagaat 450
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 646 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 695
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 tcatgcatctgatccagctgaagctga 125
|||||||||||||||| ||||||||||
Sbjct: 138 tcatgcatctgatccatctgaagctga 164
>gb|CO167589.1|CO167589 FLD1_69_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_69_H02_A029 5', mRNA sequence
Length = 531
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 189 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 248
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 249 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 308
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 309 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 368
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 369 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 428
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 429 tccaattggatgaagaat 446
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 108 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 160
>gb|CO201857.1|CO201857 RTCNT2_8_D01.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_8_D01_A029 5', mRNA sequence
Length = 827
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 497 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 556
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 557 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 616
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 617 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 676
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 677 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 736
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 737 tccaattggatgaagaat 754
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 416 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 468
>gb|CO368449.1|CO368449 RTK1_40_E08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_E08_A029 5', mRNA sequence
Length = 855
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 1 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 60
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 61 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 120
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 121 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 180
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 181 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 240
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 241 tccaattggatgaagaat 258
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 454 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 503
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 649 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 691
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 548 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 596
>gb|DR163410.1|DR163410 RTFE1_42_F07.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_F07_A029 5', mRNA sequence
Length = 907
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 530 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 589
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 590 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 649
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 650 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 709
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 710 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 769
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 770 tccaattggatgaagaat 787
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 449 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 501
>gb|DR166548.1|DR166548 RTPHOS1_12_F06.g2_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_12_F06_A029 5', mRNA sequence
Length = 417
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 51 ggaaaggatgagtactcccaatggatgactgtgagtcaaaggagtcttttagaagtaatg 110
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 111 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 170
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 171 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 230
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 231 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 290
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 291 tccaattggatgaagaat 308
>gb|DR385989.1|DR385989 RTHG1_12_D09.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_D09_A029 3', mRNA sequence
Length = 828
Score = 99.6 bits (50), Expect = 3e-019
Identities = 206/258 (79%)
Strand = Plus / Minus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 718 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 659
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 658 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 599
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 598 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 539
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 538 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 479
Query: 394 tcaacatggatgaagaat 411
|| | ||||||||||||
Sbjct: 478 tccaattggatgaagaat 461
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 265 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 216
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 70 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 28
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 171 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 123
>gb|DR745545.1|DR745545 RTCU1_30_A10.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_A10_A029 5', mRNA sequence
Length = 544
Score = 85.7 bits (43), Expect = 4e-015
Identities = 166/207 (80%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 304 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 363
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 364 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgccccacgt 423
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|||||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 424 ctgcaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 483
Query: 334 gtaacatgtgcattagtttatgggcct 360
||||| ||||| | ||||||||||||
Sbjct: 484 gtaacgtgtgctctggtttatgggcct 510
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 223 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 275
>emb|X62433.1|PSALB1A P.strobus mRNA for albumin 1
Length = 1049
Score = 83.8 bits (42), Expect = 2e-014
Identities = 192/242 (79%)
Strand = Plus / Minus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 254 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 195
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 194 gcagaatttccatctgcaaaaccacctcttggtgtcttctttgcagcaattgccccacgt 135
Query: 274 ctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcat 333
|| ||||| ||||| ||||| ||||| || ||||||||| | || ||| ||||| |||
Sbjct: 134 ctacaacctcgatattactctatttcctcttctccaaagtttgcacccaatagaatacat 75
Query: 334 gtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgt 393
||||| ||||| | |||||||||||| ||||| || || |||||| |||| ||||||
Sbjct: 74 gtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgt 15
Query: 394 tc 395
||
Sbjct: 14 tc 13
Score = 42.1 bits (21), Expect = 0.058
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 105 atctgatccagctgaagctga 125
|||||||||||||||||||||
Sbjct: 304 atctgatccagctgaagctga 284
>gb|CO159257.1|CO159257 FLD1_12_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_B04_A029 5', mRNA sequence
Length = 689
Score = 75.8 bits (38), Expect = 4e-012
Identities = 188/238 (78%)
Strand = Plus / Plus
Query: 174 atggataactgctagtcagaggagtcttcttgaagttatggctgcattcccttcagctaa 233
|||||| |||| ||||| ||||||||| | ||||| ||||| | ||| || || || ||
Sbjct: 1 atggattactgtgagtcaaaggagtcttttagaagtaatggcagaatttccgtctgcaaa 60
Query: 234 gccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccacgatactactc 293
||||| || || || || || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 61 accacctctcggtgtcttctttgcagcaattgccccacgtctgcaacctcgatattactc 120
Query: 294 aatttcatcatctccaaagatggctccctccagaattcatgtaacatgtgcattagttta 353
||||| || ||||||||| | || ||| ||||| |||||||| ||||| | |||||
Sbjct: 121 tatttcctcttctccaaagtttgcacccaatagaatacatgtaacgtgtgctctggttta 180
Query: 354 tgggccttcaccaacaggaaggatccaccaaggagtttgttcaacatggatgaagaat 411
||||||| ||||| || || |||||| |||| |||||||| | ||||||||||||
Sbjct: 181 tgggcctagtccaactggcagaatccacaaaggtgtttgttccaattggatgaagaat 238
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 434 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 483
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 629 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 671
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 528 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 576
>gb|CX652227.1|CX652227 COLD1_57_F07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_57_F07_A029 5', mRNA sequence
Length = 663
Score = 71.9 bits (36), Expect = 6e-011
Identities = 126/156 (80%)
Strand = Plus / Plus
Query: 256 gcagcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatg 315
|||||||| || || ||||||||||| ||||| ||||| ||||| || ||||||||| |
Sbjct: 61 gcagcaattgccccacgtctgcaacctcgatattactctatttcctcttctccaaagttt 120
Query: 316 gctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaagg 375
|| ||| ||||| |||||||| ||||| | |||||||||||| ||||| || ||
Sbjct: 121 gcacccaatagaatacatgtaacgtgtgctctggtttatgggcctagtccaactggcaga 180
Query: 376 atccaccaaggagtttgttcaacatggatgaagaat 411
|||||| |||| |||||||| | ||||||||||||
Sbjct: 181 atccacaaaggtgtttgttccaattggatgaagaat 216
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 412 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 461
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 607 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 649
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 506 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 554
>gb|DR070693.1|DR070693 RTDK1_15_B04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_15_B04_A029 3', mRNA sequence
Length = 831
Score = 71.9 bits (36), Expect = 6e-011
Identities = 126/156 (80%)
Strand = Plus / Minus
Query: 256 gcagcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatg 315
|||||||| || || ||||||||||| ||||| ||||| ||||| || ||||||||| |
Sbjct: 742 gcagcaattgccccacgtctgcaacctcgatattactctatttcctcttctccaaagttt 683
Query: 316 gctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaagg 375
|| ||| ||||| |||||||| ||||| | |||||||||||| ||||| || ||
Sbjct: 682 gcacccaatagaatacatgtaacgtgtgctctggtttatgggcctagtccaactggcaga 623
Query: 376 atccaccaaggagtttgttcaacatggatgaagaat 411
|||||| |||| |||||||| | ||||||||||||
Sbjct: 622 atccacaaaggtgtttgttccaattggatgaagaat 587
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 391 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 342
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 196 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 154
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 297 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 249
>gb|DR117316.1|DR117316 RTMG1_6_F04.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_F04_A029 3', mRNA sequence
Length = 912
Score = 71.9 bits (36), Expect = 6e-011
Identities = 126/156 (80%)
Strand = Plus / Minus
Query: 256 gcagcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatg 315
|||||||| || || ||||||||||| ||||| ||||| ||||| || ||||||||| |
Sbjct: 905 gcagcaattgccccacgtctgcaacctcgatattactctatttcctcttctccaaagttt 846
Query: 316 gctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaagg 375
|| ||| ||||| |||||||| ||||| | |||||||||||| ||||| || ||
Sbjct: 845 gcacccaatagaatacatgtaacgtgtgctctggtttatgggcctagtccaactggcaga 786
Query: 376 atccaccaaggagtttgttcaacatggatgaagaat 411
|||||| |||| |||||||| | ||||||||||||
Sbjct: 785 atccacaaaggtgtttgttccaattggatgaagaat 750
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 554 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 505
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 359 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 317
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 460 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 412
>gb|AW869841.1|AW869841 NXNV_122_B05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_122_B05 5' similar to Arabidopsis thaliana
sequence At4g24520 NADPH-ferrihemoprotein reductase ATR1
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 604
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 358 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 410
Score = 54.0 bits (27), Expect = 2e-005
Identities = 111/140 (79%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 439 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 498
Query: 214 gctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgt 273
|| | ||| || || || || ||||| || || || || || |||||||| || || |||
Sbjct: 499 gcagaatttccgtctgcaaaaccacctctcggtgtcttctttgcagcaattgcnccacgt 558
Query: 274 ctgcaaccacgatactactc 293
|||| || ||||| |||||
Sbjct: 559 ctgcnncctcgatattactc 578
>gb|CF672223.1|CF672223 RTCNT1_62_E01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_E01_A029 3', mRNA sequence
Length = 289
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 176 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 124
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 95 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 36
Query: 214 gc 215
||
Sbjct: 35 gc 34
>gb|CO362574.1|CO362574 RTK1_4_A08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_4_A08_A029 5', mRNA sequence
Length = 791
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 635 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 687
Score = 52.0 bits (26), Expect = 6e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatg 213
|||||||||||||| || |||||||| |||| ||||| ||||||||| | ||||| |||
Sbjct: 716 ggaaaggatgagtactcccaatggattactgtgagtcaaaggagtcttttagaagtaatg 775
Query: 214 gc 215
||
Sbjct: 776 gc 777
>gb|CX652097.1|CX652097 COLD1_56_H09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_56_H09_A029 5', mRNA sequence
Length = 641
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 73 aaggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctga 125
|||||||| ||| |||| || ||| |||||||||||||||||||||||||||
Sbjct: 578 aaggctgccttggttgcattggctagtcatgcatctgatccagctgaagctga 630
>gb|DR388466.1|DR388466 RTHG1_28_A08.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_28_A08_A029 5', mRNA sequence
Length = 796
Score = 58.0 bits (29), Expect = 1e-006
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 256 gcagcaatagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatg 315
|||||||| || || ||||||||||| ||||| ||||| ||||| || ||||||||| |
Sbjct: 682 gcagcaattgccccacgtctgcaacctcgatattactctatttcctcttctccaaagttt 741
Query: 316 gctccctccagaattcatgtaacatgtgcattagtttatgggcct 360
|| ||| ||||| |||||||| ||||| | ||||||||||||
Sbjct: 742 gcacccaatagaatacatgtaacgtgtgctctggtttatgggcct 786
>gb|BM158194.1|BM158194 NXLV_030_G01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_030_G01 5' similar to Arabidopsis thaliana
sequence At4g24520 NADPH-ferrihemoprotein reductase ATR1
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 577
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 99 tcatgcatctgatccagctgaagctga 125
|||||||||||||||||||||||||||
Sbjct: 316 tcatgcatctgatccagctgaagctga 342
Score = 44.1 bits (22), Expect = 0.015
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 154 ggaaaggatgagtattctcaatggataactgctagtcagaggagtctt 201
|||||||||||||| || |||||||| ||| ||||| |||||||||
Sbjct: 371 ggaaaggatgagtactcccaatggattactnngagtcaaaggagtctt 418
>gb|AL751325.1|AL751325 AL751325 RS Pinus pinaster cDNA clone RS07E08 similar to
NADPH-CYTOCHROME P450 REDUCTASE, mRNA sequence
Length = 673
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 81 cttttctttgggtgcaggaatcgccagatggactacatttatgaagatga 130
Score = 48.1 bits (24), Expect = 0.001
Identities = 114/144 (79%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtggaaaagg 760
|||| |||||||| ||||| |||| ||||| ||||||||||| ||||| | || ||||
Sbjct: 175 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagatagcagagaagg 234
Query: 761 ccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgcca 820
| | |||||||||| |||| || | ||||| || | ||||| || ||||||||||
Sbjct: 235 catcctatatttggaatctcatttctcaaggtggctatctctatgtatgtggtgatgcca 294
Query: 821 agggaatggctagagatgtacaca 844
|||| |||||||| ||||| ||||
Sbjct: 295 agggcatggctagggatgtgcaca 318
>gb|BE582124.1|BE582124 NXCI_029_D02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_029_D02 5' similar to Arabidopsis
thaliana sequence At4g24520 NADPH-ferrihemoprotein
reductase ATR1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 382
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 77 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 126
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgt 839
||||| || |||||||||||||| |||||||| |||||
Sbjct: 272 tatgtatgtggtgatgccaagggcatggctagggatgt 309
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 171 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 219
>gb|BF185997.1|BF185997 NXCI_114_G12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_114_G12 5' similar to Arabidopsis
thaliana sequence At4g24520 NADPH-ferrihemoprotein
reductase ATR1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 206
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 77 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 126
>gb|BF517951.1|BF517951 NXSI_032_A06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_032_A06 5' similar to Arabidopsis thaliana
sequence At4g24520 NADPH-ferrihemoprotein reductase ATR1
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 314
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 181 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 230
>gb|BG832985.1|BG832985 NXPV_084_E10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_084_E10 5' similar to Arabidopsis
thaliana sequence At4g24520 NADPH-ferrihemoprotein
reductase ATR1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 439
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 260 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 309
>gb|CF389256.1|CF389256 RTDR2_9_F06.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_9_F06_A021 5', mRNA
sequence
Length = 678
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 315 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 364
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 510 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 552
Score = 46.1 bits (23), Expect = 0.004
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
||||| |||||||| ||||| | |||||||||||| ||||| || || |||||| ||
Sbjct: 33 agaatacatgtaacgtgtgctctggtttatgggcctagtccaactggcagaatccacaaa 92
Query: 385 ggagtttgttcaacatggatgaagaat 411
|| |||||||| | ||||||||||||
Sbjct: 93 ggtgtttgttccaattggatgaagaat 119
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 409 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 457
>gb|CF390304.1|CF390304 RTDR2_18_F08.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_18_F08_A021 5', mRNA
sequence
Length = 779
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 119 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 168
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 314 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 356
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 213 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 261
>gb|CF396170.1|CF396170 RTDS2_15_E04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_15_E04_A021 5', mRNA sequence
Length = 753
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 175 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 224
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 370 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 412
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 269 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 317
>gb|CF397315.1|CF397315 RTDS3_2_E10.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_E10_A022 5', mRNA sequence
Length = 614
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 222 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 271
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 417 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 459
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 316 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 364
>gb|BX667561.1|BX667561 BX667561 RN Pinus pinaster cDNA clone RN09E09, mRNA sequence
Length = 603
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 182 cttttctttgggtgcaggaatcgccagatggactacatttatgaagatga 231
Score = 48.1 bits (24), Expect = 0.001
Identities = 114/144 (79%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtggaaaagg 760
|||| |||||||| ||||| |||| ||||| ||||||||||| ||||| | || ||||
Sbjct: 276 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagatagcagagaagg 335
Query: 761 ccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgcca 820
| | |||||||||| |||| || | ||||| || | ||||| || ||||||||||
Sbjct: 336 catcctatatttggaatctcatttctcaaggtggctatctctatgtatgtggtgatgcca 395
Query: 821 agggaatggctagagatgtacaca 844
|||| |||||||| ||||| ||||
Sbjct: 396 agggcatggctagggatgtgcaca 419
>gb|BX681676.1|BX681676 BX681676 RS Pinus pinaster cDNA clone RS62G08, mRNA sequence
Length = 549
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 37 cttttctttgggtgcaggaatcgccagatggactacatttatgaagatga 86
Score = 48.1 bits (24), Expect = 0.001
Identities = 114/144 (79%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtggaaaagg 760
|||| |||||||| ||||| |||| ||||| ||||||||||| ||||| | || ||||
Sbjct: 131 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagatagcagagaagg 190
Query: 761 ccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgcca 820
| | |||||||||| |||| || | ||||| || | ||||| || ||||||||||
Sbjct: 191 catcctatatttggaatctcatttctcaaggtggctatctctatgtatgtggtgatgcca 250
Query: 821 agggaatggctagagatgtacaca 844
|||| |||||||| ||||| ||||
Sbjct: 251 agggcatggctagggatgtgcaca 274
>gb|CR394208.1|CR394208 CR394208 RN Pinus pinaster cDNA clone RN75B10, mRNA sequence
Length = 517
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 161 cttttctttgggtgcaggaatcgccagatggactacatttatgaagatga 210
Score = 48.1 bits (24), Expect = 0.001
Identities = 114/144 (79%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtggaaaagg 760
|||| |||||||| ||||| |||| ||||| ||||||||||| ||||| | || ||||
Sbjct: 255 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagatagcagagaagg 314
Query: 761 ccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgcca 820
| | |||||||||| |||| || | ||||| || | ||||| || ||||||||||
Sbjct: 315 catcctatatttggaatctcatttctcaaggtggctatctctatgtatgtggtgatgcca 374
Query: 821 agggaatggctagagatgtacaca 844
|||| |||||||| ||||| ||||
Sbjct: 375 agggcatggctagggatgtgcaca 398
>gb|CR394289.1|CR394289 CR394289 RN Pinus pinaster cDNA clone RN76C08, mRNA sequence
Length = 362
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 161 cttttctttgggtgcaggaatcgccagatggactacatttatgaagatga 210
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 255 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 303
>gb|CO158586.1|CO158586 FLD1_7_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_H03_A029 5', mRNA sequence
Length = 721
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 156 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 205
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 351 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 393
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 250 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 298
>gb|CO161144.1|CO161144 FLD1_27_A03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_27_A03_A029 3', mRNA sequence
Length = 830
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 19 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 68
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 214 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 256
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 113 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 161
>gb|CO161225.1|CO161225 FLD1_27_A03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_27_A03_A029 5', mRNA sequence
Length = 901
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 334 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 383
Score = 50.1 bits (25), Expect = 2e-004
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 283 cgatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgt 342
||||| ||||| ||||| || ||||||||| | || ||| ||||| |||||||| |||
Sbjct: 11 cgatattactctatttcctcttctccaaagtttgcacccaatagaatacatgtaacgtgt 70
Query: 343 gcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgttcaacatgg 402
|| | |||||||||||| ||||| || || |||||| |||| |||||||| | |||
Sbjct: 71 gctctggtttatgggcctagtccaactggcagaatccacaaaggtgtttgttccaattgg 130
Query: 403 atgaagaat 411
|||||||||
Sbjct: 131 atgaagaat 139
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 529 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 571
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 428 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 476
>gb|CO163320.1|CO163320 FLD1_40_G09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_G09_A029 5', mRNA sequence
Length = 835
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 116 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 165
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 311 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 353
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 210 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 258
>gb|CO163756.1|CO163756 FLD1_43_C09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_43_C09_A029 5', mRNA sequence
Length = 863
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 25 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 74
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 220 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 262
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 119 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 167
>gb|CO164396.1|CO164396 FLD1_47_F05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_F05_A029 5', mRNA sequence
Length = 862
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 243 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 292
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 438 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 480
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 337 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 385
>gb|CO173931.1|CO173931 NDL1_40_B03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_40_B03_A029 5', mRNA sequence
Length = 587
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 107 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 156
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 302 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 344
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 201 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 249
>gb|CO201780.1|CO201780 RTCNT2_8_D01.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_8_D01_A029 3', mRNA sequence
Length = 862
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 44 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 93
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 236 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 278
>gb|CX714873.1|CX714873 RTPQ1_27_F11.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_27_F11_A032 5', mRNA sequence
Length = 655
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 265 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 314
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 460 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 502
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 359 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 407
>gb|DR017788.1|DR017788 STRS1_18_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_B05_A034 5', mRNA sequence
Length = 757
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 179 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 228
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 374 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 416
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 273 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 321
>gb|DR020102.1|DR020102 STRS1_34_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_D07_A034 5', mRNA sequence
Length = 731
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 204 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 253
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 399 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 441
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 298 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 346
>gb|DR024110.1|DR024110 STRS1_62_A08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_A08_A034 5', mRNA sequence
Length = 840
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 224 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 273
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 419 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 461
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 318 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 366
>gb|DR024259.1|DR024259 STRS1_63_D11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D11_A034 5', mRNA sequence
Length = 862
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 179 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 228
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 374 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 416
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 273 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 321
>gb|DR025202.1|DR025202 STRS1_70_F01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_F01_A034 3', mRNA sequence
Length = 866
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 45 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 94
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 240 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 282
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 139 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 187
>gb|DR025289.1|DR025289 STRS1_70_F01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_F01_A034 5', mRNA sequence
Length = 776
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 607 cttttctttggatgcaggaaccgtaatatggactacatatatgaagatga 656
||||||||||| |||||||| || | ||||||||||| |||||||||||
Sbjct: 95 cttttctttgggtgcaggaatcgccaaatggactacatttatgaagatga 144
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacaca 844
||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 290 tatgtatgtggtgatgccaagggcatggctagggatgtgcaca 332
Score = 42.1 bits (21), Expect = 0.058
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 701 ttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagat 749
|||| |||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct: 189 ttgctttctctcgtgaaggagcaaccaaagagtatgtgcagcacaagat 237
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,560
Number of Sequences: 355925
Number of extensions: 162560
Number of successful extensions: 43026
Number of sequences better than 0.5: 89
Number of HSP's better than 0.5 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42646
Number of HSP's gapped (non-prelim): 351
length of query: 1340
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1321
effective length of database: 210,514,662
effective search space: 278089868502
effective search space used: 278089868502
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)