BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 64 9e-009
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 64 9e-009
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 64 9e-009
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 64 9e-009
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 64 9e-009
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 64 9e-009
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 62 3e-008
gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus ni... 62 3e-008
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 56 2e-006
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 54 8e-006
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 50 1e-004
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 44 0.008
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 44 0.008
gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calc... 42 0.032
gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iro... 42 0.032
gb|BX683005.1|BX683005 BX683005 Pinus pinaster differenciat... 38 0.50
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 63.9 bits (32), Expect = 9e-009
Identities = 158/200 (79%)
Strand = Plus / Plus
Query: 9 tgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgt 68
||||| ||||| || ||||||||||||||| | | ||| | ||||| |||||||| |||
Sbjct: 62 tgtggttgggcttatggaatgaatttcttccacttggatgcatggagaagggagaagtgt 121
Query: 69 actgagcagtaccattattggcagaatcagaatgagaacaggacattatggaagctagga 128
||||| | || || || ||||| || | ||| ||||| | ||||| |||||||| ||
Sbjct: 122 actgaagaatatcactactggcaaaacctgaacgagaatcgtacattgtggaagctgggg 181
Query: 129 acgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttgg 188
|| | || || ||| ||||||||| ||| |||||||| ||||| || |||||||||
Sbjct: 182 acattaccaccaggcctgatcacttactataaaacaacaaagcctctagataaatcttgg 241
Query: 189 catgttcttggacttggata 208
||||||||||| ||||||||
Sbjct: 242 catgttcttggtcttggata 261
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 63.9 bits (32), Expect = 9e-009
Identities = 158/200 (79%)
Strand = Plus / Plus
Query: 9 tgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgt 68
||||| ||||| || ||||||||||||||| | | ||| | ||||| |||||||| |||
Sbjct: 140 tgtggttgggcttatggaatgaatttcttccacttggatgcatggagaagggagaagtgt 199
Query: 69 actgagcagtaccattattggcagaatcagaatgagaacaggacattatggaagctagga 128
||||| | || || || ||||| || | ||| ||||| | ||||| |||||||| ||
Sbjct: 200 actgaagaatatcactactggcaaaacctgaacgagaatcgtacattgtggaagctgggg 259
Query: 129 acgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttgg 188
|| | || || ||| ||||||||| ||| |||||||| ||||| || |||||||||
Sbjct: 260 acattaccaccaggcctgatcacttactataaaacaacaaagcctctagataaatcttgg 319
Query: 189 catgttcttggacttggata 208
||||||||||| ||||||||
Sbjct: 320 catgttcttggtcttggata 339
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 63.9 bits (32), Expect = 9e-009
Identities = 158/200 (79%)
Strand = Plus / Plus
Query: 9 tgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgt 68
||||| ||||| || ||||||||||||||| | | ||| | ||||| |||||||| |||
Sbjct: 276 tgtggttgggcttatggaatgaatttcttccacttggatgcatggagaagggagaagtgt 335
Query: 69 actgagcagtaccattattggcagaatcagaatgagaacaggacattatggaagctagga 128
||||| | || || || ||||| || | ||| ||||| | ||||| |||||||| ||
Sbjct: 336 actgaagaatatcactactggcaaaacctgaacgagaatcgtacattgtggaagctgggg 395
Query: 129 acgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttgg 188
|| | || || ||| ||||||||| ||| |||||||| ||||| || |||||||||
Sbjct: 396 acattaccaccaggcctgatcacttactataaaacaacaaagcctctagataaatcttgg 455
Query: 189 catgttcttggacttggata 208
||||||||||| ||||||||
Sbjct: 456 catgttcttggtcttggata 475
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 63.9 bits (32), Expect = 9e-009
Identities = 158/200 (79%)
Strand = Plus / Plus
Query: 9 tgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgt 68
||||| ||||| || ||||||||||||||| | | ||| | ||||| |||||||| |||
Sbjct: 87 tgtggttgggcttatggaatgaatttcttccacttggatgcatggagaagggagaagtgt 146
Query: 69 actgagcagtaccattattggcagaatcagaatgagaacaggacattatggaagctagga 128
||||| | || || || ||||| || | ||| ||||| | ||||| |||||||| ||
Sbjct: 147 actgaagaatatcactactggcaaaacctgaacgagaatcgtacattgtggaagctgggg 206
Query: 129 acgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttgg 188
|| | || || ||| ||||||||| ||| |||||||| ||||| || |||||||||
Sbjct: 207 acattaccaccaggcctgatcacttactataaaacaacaaagcctctagataaatcttgg 266
Query: 189 catgttcttggacttggata 208
||||||||||| ||||||||
Sbjct: 267 catgttcttggtcttggata 286
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 63.9 bits (32), Expect = 9e-009
Identities = 158/200 (79%)
Strand = Plus / Plus
Query: 9 tgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgt 68
||||| ||||| || ||||||||||||||| | | ||| | ||||| |||||||| |||
Sbjct: 260 tgtggttgggcttatggaatgaatttcttccacttggatgcatggagaagggagaagtgt 319
Query: 69 actgagcagtaccattattggcagaatcagaatgagaacaggacattatggaagctagga 128
||||| | || || || ||||| || | ||| ||||| | ||||| |||||||| ||
Sbjct: 320 actgaagaatatcactactggcaaaacctgaacgagaatcgtacattgtggaagctgggg 379
Query: 129 acgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttgg 188
|| | || || ||| ||||||||| ||| |||||||| ||||| || |||||||||
Sbjct: 380 acattaccaccaggcctgatcacttactataaaacaacaaagcctctagataaatcttgg 439
Query: 189 catgttcttggacttggata 208
||||||||||| ||||||||
Sbjct: 440 catgttcttggtcttggata 459
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 63.9 bits (32), Expect = 9e-009
Identities = 158/200 (79%)
Strand = Plus / Plus
Query: 9 tgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgt 68
||||| ||||| || ||||||||||||||| | | ||| | ||||| |||||||| |||
Sbjct: 268 tgtggttgggcttatggaatgaatttcttccacttggatgcatggagaagggagaagtgt 327
Query: 69 actgagcagtaccattattggcagaatcagaatgagaacaggacattatggaagctagga 128
||||| | || || || ||||| || | ||| ||||| | ||||| |||||||| ||
Sbjct: 328 actgaagaatatcactactggcaaaacctgaacgagaatcgtacattgtggaagctgggg 387
Query: 129 acgctgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttgg 188
|| | || || ||| ||||||||| ||| |||||||| ||||| || |||||||||
Sbjct: 388 acattaccaccaggcctgatcacttactataaaacaacaaagcctctagataaatcttgg 447
Query: 189 catgttcttggacttggata 208
||||||||||| ||||||||
Sbjct: 448 catgttcttggtcttggata 467
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 61.9 bits (31), Expect = 3e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 162 acaacaaaacctctggagaaatcttggcatgttcttggacttggata 208
|||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 145 acaacaaagcctctagataaatcttggcatgttcttggtcttggata 191
>gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_E10_A029 3', mRNA sequence
Length = 793
Score = 61.9 bits (31), Expect = 3e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 162 acaacaaaacctctggagaaatcttggcatgttcttggacttggata 208
|||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 9 acaacaaagcctctagataaatcttggcatgttcttggtcttggata 55
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 145 tgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttg 204
||||||||||||| |||||||| ||||| || ||||||||||||||| |||| ||||
Sbjct: 38 tgatcactttctataaaacaacaaagcctctagataaatcttggcatgtttttggtcttg 97
Query: 205 gata 208
||||
Sbjct: 98 gata 101
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 54.0 bits (27), Expect = 8e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 162 acaacaaaacctctggagaaatcttggcatgttcttggacttggata 208
|||||||| ||||| || |||||||||||||||||||| |||||||
Sbjct: 46 acaacaaagcctctagataaatcttggcatgttcttggttttggata 92
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 180 aaatcttggcatgttcttggacttggata 208
|||||||||||||||||||| ||||||||
Sbjct: 527 aaatcttggcatgttcttggtcttggata 499
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 3 aatgcctgtggatgggcatacggaatgaat 32
||||| |||||||||||||| |||||||||
Sbjct: 89 aatgcttgtggatgggcatatggaatgaat 118
Score = 38.2 bits (19), Expect = 0.50
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 175 tggagaaatcttggcatgttcttggacttgg 205
|||| ||||||||||||||||| || |||||
Sbjct: 261 tggataaatcttggcatgttctgggtcttgg 291
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 3 aatgcctgtggatgggcatacggaatgaat 32
||||| |||||||||||||| |||||||||
Sbjct: 89 aatgcttgtggatgggcatatggaatgaat 118
Score = 38.2 bits (19), Expect = 0.50
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 175 tggagaaatcttggcatgttcttggacttgg 205
|||| ||||||||||||||||| || |||||
Sbjct: 261 tggataaatcttggcatgttctgggtcttgg 291
>gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 5', mRNA sequence
Length = 802
Score = 42.1 bits (21), Expect = 0.032
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 9 tgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgt 68
||||| ||||| || ||||||||||||||| | | ||| | ||||| |||||||| |||
Sbjct: 648 tgtggttgggcttatggaatgaatttcttccacttggatgcatggagaagggagaagtgt 707
Query: 69 actga 73
|||||
Sbjct: 708 actga 712
>gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_B06_A029 3', mRNA sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.032
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 9 tgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggagggagaaatgt 68
||||| ||||| || ||||||||||||||| | | ||| | ||||| |||||||| |||
Sbjct: 148 tgtggttgggcttatggaatgaatttcttccacttggatgcatggagaagggagaagtgt 89
Query: 69 actga 73
|||||
Sbjct: 88 actga 84
>gb|BX683005.1|BX683005 BX683005 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126G08, mRNA sequence
Length = 316
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 173 tctggagaaatcttggcat 191
|||||||||||||||||||
Sbjct: 104 tctggagaaatcttggcat 86
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,567
Number of Sequences: 355925
Number of extensions: 86567
Number of successful extensions: 24011
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23980
Number of HSP's gapped (non-prelim): 32
length of query: 746
length of database: 217,277,237
effective HSP length: 19
effective length of query: 727
effective length of database: 210,514,662
effective search space: 153044159274
effective search space used: 153044159274
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)