BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2193041.2.1
(877 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW290194.1|AW290194 NXNV015H04F Nsf Xylem Normal wood Ve... 64 1e-008
gb|AL750084.1|AL750084 AL750084 AS Pinus pinaster cDNA clon... 64 1e-008
gb|AL750085.1|AL750085 AL750085 AS Pinus pinaster cDNA clon... 64 1e-008
gb|BX249215.1|BX249215 BX249215 Pinus pinaster differenciat... 64 1e-008
gb|BX250831.1|BX250831 BX250831 Pinus pinaster differenciat... 64 1e-008
gb|BX252084.1|BX252084 BX252084 Pinus pinaster differenciat... 64 1e-008
gb|BE582355.1|BE582355 NXCI_032_D07_F NXCI (Nsf Xylem Compr... 64 1e-008
gb|CD026885.1|CD026885 NXNV015H04 Nsf Xylem Normal wood Ver... 64 1e-008
gb|CF388419.1|CF388419 RTDR2_3_D12.b1_A021 Loblolly pine ro... 64 1e-008
gb|CF388513.1|CF388513 RTDR2_3_D12.g1_A021 Loblolly pine ro... 64 1e-008
gb|CF393767.1|CF393767 RTDS2_1_E10.b1_A021 Drought-stressed... 64 1e-008
gb|CF393809.1|CF393809 RTDS2_1_E10.g1_A021 Drought-stressed... 64 1e-008
gb|CF393910.1|CF393910 RTDS2_2_C02.b1_A021 Drought-stressed... 64 1e-008
gb|CF394007.1|CF394007 RTDS2_2_A02.g1_A021 Drought-stressed... 64 1e-008
gb|CF394401.1|CF394401 RTDS2_5_B07.b1_A021 Drought-stressed... 64 1e-008
gb|CF394436.1|CF394436 RTDS2_5_B07.g1_A021 Drought-stressed... 64 1e-008
gb|CF395802.1|CF395802 RTDS2_17_E07.g1_A021 Drought-stresse... 64 1e-008
gb|CF472502.1|CF472502 RTDS1_10_D04.b1_A015 Drought-stresse... 64 1e-008
gb|CF472571.1|CF472571 RTDS1_10_D04.g1_A015 Drought-stresse... 64 1e-008
gb|CF475880.1|CF475880 RTWW2_15_G08.g1_A021 Well-watered lo... 64 1e-008
gb|CF478263.1|CF478263 RTWW3_18_D02.b1_A022 Well-watered lo... 64 1e-008
gb|CF478405.1|CF478405 RTWW3_18_D02.g1_A022 Well-watered lo... 64 1e-008
gb|CF478632.1|CF478632 RTWW3_16_C09.b1_A022 Well-watered lo... 64 1e-008
gb|CF478720.1|CF478720 RTWW3_16_C09.g1_A022 Well-watered lo... 64 1e-008
gb|CF664209.1|CF664209 RTCNT1_8_D12.b1_A029 Root control Pi... 64 1e-008
gb|CF664628.1|CF664628 RTCNT1_11_B08.b1_A029 Root control P... 64 1e-008
gb|CF664711.1|CF664711 RTCNT1_11_B08.g1_A029 Root control P... 64 1e-008
gb|CF666428.1|CF666428 RTCNT1_23_E09.b1_A029 Root control P... 64 1e-008
gb|CF666495.1|CF666495 RTCNT1_23_E09.g1_A029 Root control P... 64 1e-008
gb|CF669691.1|CF669691 RTCNT1_45_B02.g1_A029 Root control P... 64 1e-008
gb|CO160859.1|CO160859 FLD1_25_C10.b1_A029 Root flooded Pin... 64 1e-008
gb|CO160940.1|CO160940 FLD1_25_C10.g1_A029 Root flooded Pin... 64 1e-008
gb|CO162376.1|CO162376 FLD1_34_H10.g1_A029 Root flooded Pin... 64 1e-008
gb|CO162858.1|CO162858 FLD1_38_A04.b1_A029 Root flooded Pin... 64 1e-008
gb|CO165196.1|CO165196 FLD1_53_A12.b1_A029 Root flooded Pin... 64 1e-008
gb|CO165271.1|CO165271 FLD1_53_A12.g1_A029 Root flooded Pin... 64 1e-008
gb|CO166493.1|CO166493 FLD1_62_H08.b1_A029 Root flooded Pin... 64 1e-008
gb|CO166559.1|CO166559 FLD1_62_H08.g1_A029 Root flooded Pin... 64 1e-008
gb|CO170709.1|CO170709 NDL1_16_G09.b1_A029 Needles control ... 64 1e-008
gb|CO170779.1|CO170779 NDL1_16_G09.g1_A029 Needles control ... 64 1e-008
gb|CO172081.1|CO172081 NDL1_27_B07.b1_A029 Needles control ... 64 1e-008
gb|CO173560.1|CO173560 NDL1_37_D04.b1_A029 Needles control ... 64 1e-008
gb|CO175172.1|CO175172 NDL1_53_B03.b1_A029 Needles control ... 64 1e-008
gb|CO175248.1|CO175248 NDL1_53_B03.g1_A029 Needles control ... 64 1e-008
gb|CO176608.1|CO176608 NDL1_63_C05.b1_A029 Needles control ... 64 1e-008
gb|CO176685.1|CO176685 NDL1_63_C05.g1_A029 Needles control ... 64 1e-008
gb|CO199598.1|CO199598 GEO2_2_G02.b1_A032 Root gravitropism... 64 1e-008
gb|CO199677.1|CO199677 GEO2_2_G02.g1_A032 Root gravitropism... 64 1e-008
gb|CO361021.1|CO361021 NDL2_2_D04.b1_A029 Needles control 2... 64 1e-008
gb|CO361031.1|CO361031 NDL2_2_E04.b1_A029 Needles control 2... 64 1e-008
gb|CO361092.1|CO361092 NDL2_2_E04.g1_A029 Needles control 2... 64 1e-008
gb|CO361121.1|CO361121 NDL2_2_H05.g1_A029 Needles control 2... 64 1e-008
gb|CO361376.1|CO361376 NDL2_4_B03.g1_A029 Needles control 2... 64 1e-008
gb|CO363208.1|CO363208 RTK1_8_G02.b1_A029 Roots minus potas... 64 1e-008
gb|CO363290.1|CO363290 RTK1_8_G02.g1_A029 Roots minus potas... 64 1e-008
gb|CO365003.1|CO365003 RTK1_23_C04.b1_A029 Roots minus pota... 64 1e-008
gb|CO365083.1|CO365083 RTK1_23_C04.g1_A029 Roots minus pota... 64 1e-008
gb|CV031901.1|CV031901 RTNACL1_4_B01.g1_A029 Roots plus add... 64 1e-008
gb|CV033739.1|CV033739 RTNACL1_36_G12.b1_A029 Roots plus ad... 64 1e-008
gb|CV033827.1|CV033827 RTNACL1_36_G12.g1_A029 Roots plus ad... 64 1e-008
gb|CX647195.1|CX647195 COLD1_14_F06.b1_A029 Root cold Pinus... 64 1e-008
gb|CX650012.1|CX650012 COLD1_43_A05.b1_A029 Root cold Pinus... 64 1e-008
gb|CX650063.1|CX650063 COLD1_43_G01.b1_A029 Root cold Pinus... 64 1e-008
gb|CX650148.1|CX650148 COLD1_43_G01.g1_A029 Root cold Pinus... 64 1e-008
gb|CX652431.1|CX652431 COLD1_59_B09.b1_A029 Root cold Pinus... 64 1e-008
gb|CX653206.1|CX653206 COLD1_64_C05.b1_A029 Root cold Pinus... 64 1e-008
gb|DN628839.1|DN628839 EST979655 Subtracted pine embryo lib... 64 1e-008
gb|DN631836.1|DN631836 EST982652 Subtracted pine embryo lib... 64 1e-008
gb|DN634492.1|DN634492 EST985308 Subtracted pine embryo lib... 64 1e-008
gb|DR012263.1|DR012263 HEAT1_11_B02.g1_A029 Root at 37 C fo... 64 1e-008
gb|DR013447.1|DR013447 HEAT1_19_H07.b1_A029 Root at 37 C fo... 64 1e-008
gb|DR013532.1|DR013532 HEAT1_19_H07.g1_A029 Root at 37 C fo... 64 1e-008
gb|DR016444.1|DR016444 STRS1_10_D12.b1_A034 Shoot tip pitch... 64 1e-008
gb|DR022333.1|DR022333 STRS1_50_H06.b1_A034 Shoot tip pitch... 64 1e-008
gb|DR022411.1|DR022411 STRS1_50_H06.g1_A034 Shoot tip pitch... 64 1e-008
gb|DR023648.1|DR023648 STRS1_59_D01.b1_A034 Shoot tip pitch... 64 1e-008
gb|DR049287.1|DR049287 RTBOR1_15_C06.b1_A029 Roots plus add... 64 1e-008
gb|DR058333.1|DR058333 RTNIT1_11_E05.b1_A029 Roots minus ni... 64 1e-008
gb|DR059991.1|DR059991 RTNIT1_25_B06.b1_A029 Roots minus ni... 64 1e-008
gb|DR060070.1|DR060070 RTNIT1_25_B06.g1_A029 Roots minus ni... 64 1e-008
gb|DR071949.1|DR071949 RTDK1_23_C09.b1_A029 Roots, dark Pin... 64 1e-008
gb|DR072600.1|DR072600 RTDK1_27_H08.b1_A029 Roots, dark Pin... 64 1e-008
gb|DR072749.1|DR072749 RTDK1_28_G10.b1_A029 Roots, dark Pin... 64 1e-008
gb|DR072829.1|DR072829 RTDK1_28_G10.g1_A029 Roots, dark Pin... 64 1e-008
gb|DR079965.1|DR079965 RTFEPL1_19_C10.b1_A029 Roots plus ad... 64 1e-008
gb|DR079988.1|DR079988 RTFEPL1_19_F12.b1_A029 Roots plus ad... 64 1e-008
gb|DR080021.1|DR080021 RTFEPL1_19_C10.g1_A029 Roots plus ad... 64 1e-008
gb|DR080048.1|DR080048 RTFEPL1_19_F12.g1_A029 Roots plus ad... 64 1e-008
gb|DR100886.1|DR100886 STRR1_69_B12.b1_A033 Stem Response R... 64 1e-008
gb|DR100956.1|DR100956 STRR1_69_B12.g1_A033 Stem Response R... 64 1e-008
gb|DR101989.1|DR101989 STRR1_77_F09.b1_A033 Stem Response R... 64 1e-008
gb|DR102569.1|DR102569 STRR1_82_D04.b1_A033 Stem Response R... 64 1e-008
gb|DR102632.1|DR102632 STRR1_82_D04.g1_A033 Stem Response R... 64 1e-008
gb|DR110601.1|DR110601 RTS1_11_G05.g1_A029 Roots minus sulf... 64 1e-008
gb|DR112027.1|DR112027 RTS1_25_G12.b1_A029 Roots minus sulf... 64 1e-008
gb|DR112096.1|DR112096 RTS1_25_G12.g1_A029 Roots minus sulf... 64 1e-008
gb|DR112465.1|DR112465 RTS1_28_H07.b1_A029 Roots minus sulf... 64 1e-008
gb|DR117025.1|DR117025 RTMG1_4_F07.b1_A029 Roots minus magn... 64 1e-008
gb|DR117102.1|DR117102 RTMG1_4_F07.g1_A029 Roots minus magn... 64 1e-008
gb|DR118920.1|DR118920 RTMG1_20_B07.b1_A029 Roots minus mag... 64 1e-008
gb|DR160843.1|DR160843 RTFE1_8_H05.b1_A029 Roots minus iron... 64 1e-008
gb|DR160938.1|DR160938 RTFE1_8_H05.g1_A029 Roots minus iron... 64 1e-008
gb|DR163171.1|DR163171 RTFE1_41_H01.b1_A029 Roots minus iro... 64 1e-008
gb|DR163177.1|DR163177 RTFE1_41_H09.b1_A029 Roots minus iro... 64 1e-008
gb|DR163259.1|DR163259 RTFE1_41_H01.g1_A029 Roots minus iro... 64 1e-008
gb|DR163267.1|DR163267 RTFE1_41_H09.g1_A029 Roots minus iro... 64 1e-008
gb|DR165796.1|DR165796 RTPHOS1_7_H07.b1_A029 Roots minus ph... 64 1e-008
gb|DR165877.1|DR165877 RTPHOS1_7_H07.g1_A029 Roots minus ph... 64 1e-008
gb|DR179529.1|DR179529 RTMNUT1_22_E08.g2_A029 Roots minus m... 64 1e-008
gb|DR180569.1|DR180569 RTMNUT1_33_B02.g1_A029 Roots minus m... 64 1e-008
gb|DR384793.1|DR384793 RTHG1_4_D04.g1_A029 Roots plus added... 64 1e-008
gb|DR386266.1|DR386266 RTHG1_14_A12.b1_A029 Roots plus adde... 64 1e-008
gb|DR386939.1|DR386939 RTHG1_18_H01.b1_A029 Roots plus adde... 64 1e-008
gb|DR387653.1|DR387653 RTHG1_23_F09.b1_A029 Roots plus adde... 64 1e-008
gb|DR387733.1|DR387733 RTHG1_23_F09.g2_A029 Roots plus adde... 64 1e-008
gb|DT629977.1|DT629977 EST1154389 Subtracted pine embryo li... 64 1e-008
gb|CF470845.1|CF470845 RTDS1_15_E06.b1_A015 Drought-stresse... 58 6e-007
gb|BX677138.1|BX677138 BX677138 RN Pinus pinaster cDNA clon... 58 6e-007
gb|BX680410.1|BX680410 BX680410 RS Pinus pinaster cDNA clon... 58 6e-007
gb|BM902829.1|BM902829 NXLV_074_A02_F NXLV (Nsf Xylem Late ... 56 3e-006
gb|DR049334.1|DR049334 RTBOR1_15_C06.g1_A029 Roots plus add... 56 3e-006
gb|DR100323.1|DR100323 STRR1_63_F10.b1_A033 Stem Response R... 56 3e-006
gb|DR102049.1|DR102049 STRR1_77_F09.g1_A033 Stem Response R... 56 3e-006
gb|DR165348.1|DR165348 RTPHOS1_4_A03.g1_A029 Roots minus ph... 56 3e-006
gb|BE123552.1|BE123552 NXNV_149_F03_F Nsf Xylem Normal wood... 50 2e-004
gb|BF169553.1|BF169553 NXCI_124_B02_F NXCI (Nsf Xylem Compr... 50 2e-004
gb|BF778329.1|BF778329 NXSI_083_A09_F NXSI (Nsf Xylem Side ... 50 2e-004
gb|BQ654765.1|BQ654765 NXRV085_D02_F NXRV (Nsf Xylem Root w... 50 2e-004
gb|BQ699933.1|BQ699933 NXRV131_F04_F NXRV (Nsf Xylem Root w... 50 2e-004
gb|BQ700700.1|BQ700700 NXRV110_B10_F NXRV (Nsf Xylem Root w... 50 2e-004
gb|CD017570.1|CD017570 NXCI_128_B11_F NXCI (Nsf Xylem Compr... 50 2e-004
gb|CF664271.1|CF664271 RTCNT1_8_D12.g1_A029 Root control Pi... 50 2e-004
gb|CX647260.1|CX647260 COLD1_14_F06.g1_A029 Root cold Pinus... 50 2e-004
gb|CO167881.1|CO167881 FLD1_71_G10.g1_A029 Root flooded Pin... 46 0.002
gb|BF517876.1|BF517876 NXSI_029_B12_F NXSI (Nsf Xylem Side ... 42 0.038
gb|BF517946.1|BF517946 NXSI_031_H10_F NXSI (Nsf Xylem Side ... 42 0.038
gb|BG039777.1|BG039777 NXSI_103_G11_F NXSI (Nsf Xylem Side ... 42 0.038
gb|BG040507.1|BG040507 NXSI_112_A02_F NXSI (Nsf Xylem Side ... 42 0.038
gb|BG275347.1|BG275347 NXSI_142_F11_F NXSI (Nsf Xylem Side ... 42 0.038
gb|BQ697742.1|BQ697742 NXPV_052_C11_F NXPV (Nsf Xylem Plani... 42 0.038
gb|CD023427.1|CD023427 NXPV_126_B07_F NXPV (Nsf Xylem Plani... 42 0.038
gb|BX677124.1|BX677124 BX677124 RN Pinus pinaster cDNA clon... 42 0.038
gb|CO361298.1|CO361298 NDL2_4_B03.b1_A029 Needles control 2... 42 0.038
gb|DR100385.1|DR100385 STRR1_63_F10.g1_A033 Stem Response R... 42 0.038
gb|CD020287.1|CD020287 NXNV056D10 Nsf Xylem Normal wood Ver... 40 0.15
>gb|AW290194.1|AW290194 NXNV015H04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015H04 5', mRNA sequence
Length = 485
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 49 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 108
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 109 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 152
>gb|AL750084.1|AL750084 AL750084 AS Pinus pinaster cDNA clone AS05F01 similar to RP L18,
mRNA sequence
Length = 677
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 472 gcaccaggtgttccacacagccacactaaaccatatgttcgatccaagggtaggaaattt 531
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 532 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 575
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 85 tacctcaagctccttgtcaagctataccg 113
>gb|AL750085.1|AL750085 AL750085 AS Pinus pinaster cDNA clone AS05F02 similar to RP L18,
mRNA sequence
Length = 680
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 472 gcaccaggtgttccacacagccacactaaaccatatgttcgatccaagggtaggaaattt 531
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 532 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 575
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 85 tacctcaagctccttgtcaagctataccg 113
>gb|BX249215.1|BX249215 BX249215 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP021D02 similar to 60S RIBOSOMAL PROTEIN
L18, mRNA sequence
Length = 697
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 423 gcaccaggtgttccacacagccacactaaaccatatgttcgatccaagggtaggaaattt 482
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 483 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 526
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 36 tacctcaagctccttgtcaagctataccg 64
>gb|BX250831.1|BX250831 BX250831 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041H07 similar to 60S RIBOSOMAL PROTEIN
L18, mRNA sequence
Length = 664
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 514 gcaccaggtgttccacacagccacactaaaccatatgttcgatccaagggtaggaaattt 573
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 574 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 617
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 127 tacctcaagctccttgtcaagctataccg 155
>gb|BX252084.1|BX252084 BX252084 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP059E04 similar to 60S RIBOSOMAL PROTEIN
L18, mRNA sequence
Length = 671
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 494 gcaccaggtgttccacacagccacactaaaccatatgttcgatccaagggtaggaaattt 553
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 554 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 597
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 107 tacctcaagctccttgtcaagctataccg 135
>gb|BE582355.1|BE582355 NXCI_032_D07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_032_D07 5' similar to Arabidopsis
thaliana sequence At3g05590 putative 60S ribosomal
protein L18 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 348
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 104 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 163
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 164 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 207
>gb|CD026885.1|CD026885 NXNV015H04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015H04 5' similar to Arabidopsis thaliana sequence
At3g05590 putative 60S ribosomal protein L18 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 485
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 49 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 108
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 109 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 152
>gb|CF388419.1|CF388419 RTDR2_3_D12.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_3_D12_A021 3', mRNA
sequence
Length = 732
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 254 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 313
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 314 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 357
>gb|CF388513.1|CF388513 RTDR2_3_D12.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_3_D12_A021 5', mRNA
sequence
Length = 740
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 495 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 554
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 555 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 598
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
||||||||||||||||||||||| |||||
Sbjct: 108 tacctcaagctcctcgtcaagctataccg 136
>gb|CF393767.1|CF393767 RTDS2_1_E10.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_E10_A021 3', mRNA sequence
Length = 631
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 153 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 212
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 213 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 256
>gb|CF393809.1|CF393809 RTDS2_1_E10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_E10_A021 5', mRNA sequence
Length = 738
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 534 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 593
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 594 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 637
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
||||||||||||||||||||||| |||||
Sbjct: 147 tacctcaagctcctcgtcaagctataccg 175
>gb|CF393910.1|CF393910 RTDS2_2_C02.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_2_C02_A021 3', mRNA sequence
Length = 593
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 79 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 138
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 139 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 182
>gb|CF394007.1|CF394007 RTDS2_2_A02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_2_A02_A021 5', mRNA sequence
Length = 642
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 378 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 437
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 438 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 481
>gb|CF394401.1|CF394401 RTDS2_5_B07.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_5_B07_A021 3', mRNA sequence
Length = 648
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 170 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 229
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 230 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 273
>gb|CF394436.1|CF394436 RTDS2_5_B07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_5_B07_A021 5', mRNA sequence
Length = 742
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 480 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 539
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 540 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 583
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 93 tacctcaagctccttgtcaagctataccg 121
>gb|CF395802.1|CF395802 RTDS2_17_E07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_17_E07_A021 5', mRNA sequence
Length = 746
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 480 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 539
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 540 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 583
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
||||||||||||||||||||||| |||||
Sbjct: 93 tacctcaagctcctcgtcaagctataccg 121
>gb|CF472502.1|CF472502 RTDS1_10_D04.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_10_D04_A015 3', mRNA sequence
Length = 590
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 96 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 155
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 156 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 199
>gb|CF472571.1|CF472571 RTDS1_10_D04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_10_D04_A015 5', mRNA sequence
Length = 680
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 173 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 232
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 233 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 276
>gb|CF475880.1|CF475880 RTWW2_15_G08.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_15_G08_A021 5', mRNA sequence
Length = 686
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 478 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 537
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 538 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 581
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
||||||||||||||||||||||| |||||
Sbjct: 91 tacctcaagctcctcgtcaagctataccg 119
>gb|CF478263.1|CF478263 RTWW3_18_D02.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_D02_A022 3', mRNA sequence
Length = 599
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 121 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 180
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 181 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 224
>gb|CF478405.1|CF478405 RTWW3_18_D02.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_D02_A022 5', mRNA sequence
Length = 754
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 520 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 579
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 580 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 623
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 133 tacctcaagctccttgtcaagctataccg 161
>gb|CF478632.1|CF478632 RTWW3_16_C09.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_C09_A022 3', mRNA sequence
Length = 631
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 153 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 212
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 213 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 256
>gb|CF478720.1|CF478720 RTWW3_16_C09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_C09_A022 5', mRNA sequence
Length = 724
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 457 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 516
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 517 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 560
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
||||||||||||||||||||||| |||||
Sbjct: 70 tacctcaagctcctcgtcaagctataccg 98
>gb|CF664209.1|CF664209 RTCNT1_8_D12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_8_D12_A029 3', mRNA sequence
Length = 582
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 104 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 163
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 164 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 207
>gb|CF664628.1|CF664628 RTCNT1_11_B08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_11_B08_A029 3', mRNA sequence
Length = 819
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 343 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 402
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 403 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 446
>gb|CF664711.1|CF664711 RTCNT1_11_B08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_11_B08_A029 5', mRNA sequence
Length = 764
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 453 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 512
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 513 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 556
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 66 tacctcaagctccttgtcaagctataccg 94
>gb|CF666428.1|CF666428 RTCNT1_23_E09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_23_E09_A029 3', mRNA sequence
Length = 697
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 246 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 305
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 306 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 349
>gb|CF666495.1|CF666495 RTCNT1_23_E09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_23_E09_A029 5', mRNA sequence
Length = 681
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 493 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 552
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 553 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 596
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 106 tacctcaagctccttgtcaagctataccg 134
>gb|CF669691.1|CF669691 RTCNT1_45_B02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_B02_A029 5', mRNA sequence
Length = 780
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 472 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 531
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 532 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 575
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 85 tacctcaagctccttgtcaagctataccg 113
>gb|CO160859.1|CO160859 FLD1_25_C10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_25_C10_A029 3', mRNA sequence
Length = 842
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 365 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 424
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 425 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 468
>gb|CO160940.1|CO160940 FLD1_25_C10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_25_C10_A029 5', mRNA sequence
Length = 887
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 489 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 548
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 549 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 592
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
||||||||||||||||||||||| |||||
Sbjct: 102 tacctcaagctcctcgtcaagctataccg 130
>gb|CO162376.1|CO162376 FLD1_34_H10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H10_A029 5', mRNA sequence
Length = 834
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 430 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 489
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 490 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 533
>gb|CO162858.1|CO162858 FLD1_38_A04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A04_A029 3', mRNA sequence
Length = 799
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 330 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 389
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 390 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 433
>gb|CO165196.1|CO165196 FLD1_53_A12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_53_A12_A029 3', mRNA sequence
Length = 710
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 237 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 296
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 297 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 340
>gb|CO165271.1|CO165271 FLD1_53_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_53_A12_A029 5', mRNA sequence
Length = 653
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 449 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 508
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 509 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 552
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
||||||||||||||||||||||| |||||
Sbjct: 64 tacctcaagctcctcgtcaagctataccg 92
>gb|CO166493.1|CO166493 FLD1_62_H08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_62_H08_A029 3', mRNA sequence
Length = 669
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 169 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 228
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 229 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 272
>gb|CO166559.1|CO166559 FLD1_62_H08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_62_H08_A029 5', mRNA sequence
Length = 908
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 520 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 579
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 580 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 623
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 133 tacctcaagctccttgtcaagctataccg 161
>gb|CO170709.1|CO170709 NDL1_16_G09.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_16_G09_A029 3', mRNA sequence
Length = 744
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 262 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 203
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 202 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 159
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 649 tacctcaagctccttgtcaagctataccg 621
>gb|CO170779.1|CO170779 NDL1_16_G09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_16_G09_A029 5', mRNA sequence
Length = 655
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 453 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 394
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 393 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 350
>gb|CO172081.1|CO172081 NDL1_27_B07.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_27_B07_A029 3', mRNA sequence
Length = 717
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 260 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 319
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 320 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 363
>gb|CO173560.1|CO173560 NDL1_37_D04.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_37_D04_A029 3', mRNA sequence
Length = 413
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 117 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 176
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 177 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 220
>gb|CO175172.1|CO175172 NDL1_53_B03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_B03_A029 3', mRNA sequence
Length = 674
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 196 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 255
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 256 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 299
>gb|CO175248.1|CO175248 NDL1_53_B03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_B03_A029 5', mRNA sequence
Length = 788
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 479 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 538
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 539 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 582
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 92 tacctcaagctccttgtcaagctataccg 120
>gb|CO176608.1|CO176608 NDL1_63_C05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_63_C05_A029 3', mRNA sequence
Length = 517
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 40 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 99
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 100 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 143
>gb|CO176685.1|CO176685 NDL1_63_C05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_63_C05_A029 5', mRNA sequence
Length = 781
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 472 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 531
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 532 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 575
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 85 tacctcaagctccttgtcaagctataccg 113
>gb|CO199598.1|CO199598 GEO2_2_G02.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_2_G02_A032 3', mRNA sequence
Length = 827
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 353 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 412
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 413 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 456
>gb|CO199677.1|CO199677 GEO2_2_G02.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_2_G02_A032 5', mRNA sequence
Length = 832
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 459 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 518
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 519 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 562
Score = 42.1 bits (21), Expect = 0.038
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 tacctcaagctcctcgtcaagctctaccg 172
|||||||||||||| |||||||| |||||
Sbjct: 72 tacctcaagctccttgtcaagctataccg 100
>gb|CO361021.1|CO361021 NDL2_2_D04.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_D04_A029 3', mRNA sequence
Length = 842
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 370 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 429
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 430 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 473
>gb|CO361031.1|CO361031 NDL2_2_E04.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_E04_A029 3', mRNA sequence
Length = 831
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 531 gcaccaggagtgcctcacagccacaccaagccttatgttcgctcgaagggtaggaagttt 590
|||||||| || || ||||||||||| || || |||||||| || ||||||||||| |||
Sbjct: 359 gcaccaggtgttccccacagccacactaaaccatatgttcgatctaagggtaggaaattt 418
Query: 591 gagaaggcgagaggaaggaggaacagcaggggcttcaaggtcta 634
|||| ||| | || ||||| ||||| | ||||||||||||||
Sbjct: 419 gagatggctcgtggtaggagaaacagtcgtggcttcaaggtcta 462
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,806
Number of Sequences: 355925
Number of extensions: 87806
Number of successful extensions: 20653
Number of sequences better than 0.5: 146
Number of HSP's better than 0.5 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20263
Number of HSP's gapped (non-prelim): 389
length of query: 877
length of database: 217,277,237
effective HSP length: 19
effective length of query: 858
effective length of database: 210,514,662
effective search space: 180621579996
effective search space used: 180621579996
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)