BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192701.2.2
(654 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX681680.1|BX681680 BX681680 RS Pinus pinaster cDNA clon... 70 1e-010
gb|AW011366.1|AW011366 ST19H10 Pine TriplEx shoot tip libra... 60 1e-007
gb|AW042959.1|AW042959 ST27E10 Pine TriplEx shoot tip libra... 60 1e-007
gb|DR099897.1|DR099897 STRR1_59_E05.g1_A033 Stem Response R... 60 1e-007
gb|AW064656.1|AW064656 ST34B04 Pine TriplEx shoot tip libra... 52 3e-005
gb|BG318067.1|BG318067 NXPV_010_B04_F NXPV (Nsf Xylem Plani... 52 3e-005
gb|BG318184.1|BG318184 NXPV_011_E02_F NXPV (Nsf Xylem Plani... 52 3e-005
gb|BI397846.1|BI397846 NXPV_108_D10_F NXPV (Nsf Xylem Plani... 52 3e-005
gb|BQ291482.1|BQ291482 NXRV059_F08_F NXRV (Nsf Xylem Root w... 52 3e-005
gb|BQ702181.1|BQ702181 NXSI_125_H02_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|CD028483.1|CD028483 NXSI_119_E06_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|CO367450.1|CO367450 RTK1_34_H04.b1_A029 Roots minus pota... 52 3e-005
gb|CO367532.1|CO367532 RTK1_34_H04.g1_A029 Roots minus pota... 52 3e-005
gb|CX649429.1|CX649429 COLD1_35_E12.b1_A029 Root cold Pinus... 52 3e-005
gb|CX649512.1|CX649512 COLD1_35_E12.g1_A029 Root cold Pinus... 52 3e-005
gb|DR050573.1|DR050573 RTBOR1_24_H06.b1_A029 Roots plus add... 52 3e-005
gb|DR050658.1|DR050658 RTBOR1_24_H06.g1_A029 Roots plus add... 52 3e-005
gb|DR089861.1|DR089861 RTAL1_11_F04.b1_A029 Roots plus adde... 52 3e-005
gb|DR092369.1|DR092369 STRR1_1_A09.b1_A033 Stem Response Re... 52 3e-005
gb|DR092449.1|DR092449 STRR1_1_A09.g1_A033 Stem Response Re... 52 3e-005
gb|DR111320.1|DR111320 RTS1_16_H04.g1_A029 Roots minus sulf... 52 3e-005
gb|DR117021.1|DR117021 RTMG1_4_F03.b1_A029 Roots minus magn... 52 3e-005
gb|DR120307.1|DR120307 RTMG1_28_G09.g2_A029 Roots minus mag... 52 3e-005
gb|DR385301.1|DR385301 RTHG1_7_G09.g1_A029 Roots plus added... 52 3e-005
gb|DR745683.1|DR745683 RTCU1_31_D06.g1_A029 Roots plus adde... 52 3e-005
gb|BX677557.1|BX677557 BX677557 RN Pinus pinaster cDNA clon... 50 1e-004
gb|CX650267.1|CX650267 COLD1_44_C04.g1_A029 Root cold Pinus... 50 1e-004
gb|DN461769.1|DN461769 EST957568 Sequencing ESTs from loblo... 50 1e-004
gb|DT627038.1|DT627038 EST1160114 Sequencing ESTs from lobl... 50 1e-004
gb|AW042801.1|AW042801 ST25E10 Pine TriplEx shoot tip libra... 48 5e-004
gb|AW981873.1|AW981873 PC19F11 Pine TriplEx pollen cone lib... 48 5e-004
gb|BG275492.1|BG275492 NXSI_139_E06_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BF221003.1|BF221003 NXCI_153_F11_F NXCI (Nsf Xylem Compr... 46 0.002
gb|BQ702060.1|BQ702060 NXSI_123_H06_F NXSI (Nsf Xylem Side ... 46 0.002
gb|CD028509.1|CD028509 NXSI_119_G09_F NXSI (Nsf Xylem Side ... 46 0.002
gb|CF387261.1|CF387261 RTDR1_11_C04.g1_A015 Loblolly pine r... 46 0.002
gb|CF392372.1|CF392372 RTDR3_7_A09.g1_A022 Loblolly pine ro... 46 0.002
gb|CF473794.1|CF473794 RTWW2_4_A05.g1_A021 Well-watered lob... 46 0.002
gb|CF477758.1|CF477758 RTWW3_9_G04.g1_A022 Well-watered lob... 46 0.002
gb|DR053248.1|DR053248 RTCA1_9_H08.g1_A029 Roots minus calc... 46 0.002
gb|DR079108.1|DR079108 RTFEPL1_9_D04.b1_A029 Roots plus add... 46 0.002
gb|DR079180.1|DR079180 RTFEPL1_9_D04.g1_A029 Roots plus add... 46 0.002
gb|DR101494.1|DR101494 STRR1_73_C07.g1_A033 Stem Response R... 46 0.002
gb|DR111325.1|DR111325 RTS1_16_H12.g1_A029 Roots minus sulf... 46 0.002
gb|DR120126.1|DR120126 RTMG1_27_E03.g2_A029 Roots minus mag... 46 0.002
gb|DR386373.1|DR386373 RTHG1_14_E11.g1_A029 Roots plus adde... 46 0.002
gb|AA556210.1|AA556210 65 Loblolly pine N Pinus taeda cDNA ... 44 0.007
gb|BX249133.1|BX249133 BX249133 Pinus pinaster differenciat... 44 0.007
gb|BX250252.1|BX250252 BX250252 Pinus pinaster differenciat... 44 0.007
gb|BX252050.1|BX252050 BX252050 Pinus pinaster differenciat... 44 0.007
gb|BG039926.1|BG039926 NXSI_101_G08_F NXSI (Nsf Xylem Side ... 44 0.007
gb|BQ699586.1|BQ699586 NXRV124_C02_F NXRV (Nsf Xylem Root w... 44 0.007
gb|BQ700423.1|BQ700423 NXRV105_E04_F NXRV (Nsf Xylem Root w... 44 0.007
gb|CV032483.1|CV032483 RTNACL1_8_B03.g1_A029 Roots plus add... 44 0.007
gb|CX651620.1|CX651620 COLD1_53_D10.g1_A029 Root cold Pinus... 44 0.007
gb|DR011506.1|DR011506 HEAT1_6_D05.b1_A029 Root at 37 C for... 44 0.007
gb|DR011586.1|DR011586 HEAT1_6_D05.g1_A029 Root at 37 C for... 44 0.007
gb|DR014084.1|DR014084 HEAT1_23_G03.b1_A029 Root at 37 C fo... 44 0.007
gb|DR072419.1|DR072419 RTDK1_26_E01.b1_A029 Roots, dark Pin... 44 0.007
gb|DR072500.1|DR072500 RTDK1_26_E01.g1_A029 Roots, dark Pin... 44 0.007
gb|DR098991.1|DR098991 STRR1_50_D02.b1_A033 Stem Response R... 44 0.007
gb|DR109733.1|DR109733 RTS1_4_F11.b1_A029 Roots minus sulfu... 44 0.007
gb|DR110590.1|DR110590 RTS1_11_F06.g1_A029 Roots minus sulf... 44 0.007
gb|DR111315.1|DR111315 RTS1_16_G08.g1_A029 Roots minus sulf... 44 0.007
gb|DR112758.1|DR112758 RTS1_30_H09.b1_A029 Roots minus sulf... 44 0.007
gb|DR112824.1|DR112824 RTS1_30_H09.g1_A029 Roots minus sulf... 44 0.007
gb|DR168541.1|DR168541 RTPHOS1_26_E04.b1_A029 Roots minus p... 44 0.007
gb|DR168614.1|DR168614 RTPHOS1_26_E04.g1_A029 Roots minus p... 44 0.007
gb|AW010680.1|AW010680 ST09H07 Pine TriplEx shoot tip libra... 42 0.028
gb|AW064560.1|AW064560 ST33A07 Pine TriplEx shoot tip libra... 42 0.028
gb|CF664280.1|CF664280 RTCNT1_8_F09.g1_A029 Root control Pi... 42 0.028
gb|BX681668.1|BX681668 BX681668 RS Pinus pinaster cDNA clon... 42 0.028
gb|CR354697.1|CR354697 CR354697 Pinus pinaster differenciat... 42 0.028
gb|CO157871.1|CO157871 FLD1_2_E06.g1_A029 Root flooded Pinu... 42 0.028
gb|CV134878.1|CV134878 EST846087 Sequencing ESTs from loblo... 42 0.028
gb|DN458152.1|DN458152 EST953951 Sequencing ESTs from loblo... 42 0.028
gb|DR016330.1|DR016330 STRS1_9_A09.g1_A034 Shoot tip pitch ... 42 0.028
gb|DR017816.1|DR017816 STRS1_18_E02.g1_A034 Shoot tip pitch... 42 0.028
gb|DR021149.1|DR021149 STRS1_42_D09.g1_A034 Shoot tip pitch... 42 0.028
gb|DR092996.1|DR092996 STRR1_5_H09.b1_A033 Stem Response Re... 42 0.028
gb|DR093081.1|DR093081 STRR1_5_H09.g1_A033 Stem Response Re... 42 0.028
gb|DR179050.1|DR179050 RTMNUT1_15_E03.g1_A029 Roots minus m... 42 0.028
gb|DR742708.1|DR742708 RTCU1_6_B04.g2_A029 Roots plus added... 42 0.028
gb|DT626124.1|DT626124 EST1158048 Sequencing ESTs from lobl... 42 0.028
gb|DT624325.1|DT624325 EST1158600 Sequencing ESTs from lobl... 42 0.028
gb|AW010040.1|AW010040 ST01G02 Pine TriplEx shoot tip libra... 40 0.11
gb|AW587726.1|AW587726 ST66A04 Pine TriplEx shoot tip libra... 40 0.11
gb|BE656756.1|BE656756 NXCI_056_E06_F NXCI (Nsf Xylem Compr... 40 0.11
gb|CV033254.1|CV033254 RTNACL1_33_G10.b1_A029 Roots plus ad... 40 0.11
gb|BQ702065.1|BQ702065 NXSI_124_A05_F NXSI (Nsf Xylem Side ... 38 0.44
gb|CD023288.1|CD023288 NXPV_108_C12_F NXPV (Nsf Xylem Plani... 38 0.44
gb|DR058253.1|DR058253 RTNIT1_10_E08.g1_A029 Roots minus ni... 38 0.44
gb|DR119029.1|DR119029 RTMG1_20_E07.g1_A029 Roots minus mag... 38 0.44
>gb|BX681680.1|BX681680 BX681680 RS Pinus pinaster cDNA clone RS62H03, mRNA sequence
Length = 548
Score = 69.9 bits (35), Expect = 1e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgcccctaga 440
||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||
Sbjct: 274 tgcccctgctacaacaactggaagaccaagagaggaggccccaagtgcccttaga 328
>gb|AW011366.1|AW011366 ST19H10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST19H10, mRNA sequence
Length = 396
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
|||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 178 tgcccctgttacaacaactggaagaccaagagaggaggccccaagtgccc 227
>gb|AW042959.1|AW042959 ST27E10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST27E10, mRNA sequence
Length = 513
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
|||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 376 tgcccctgttacaacaactggaagaccaagagaggaggccccaagtgccc 425
>gb|DR099897.1|DR099897 STRR1_59_E05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_59_E05_A033 5', mRNA sequence
Length = 430
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
|||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 215 tgcccctgttacaacaactggaagaccaagagaggaggccccaagtgccc 264
>gb|AW064656.1|AW064656 ST34B04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST34B04, mRNA sequence
Length = 508
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 353 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 402
>gb|BG318067.1|BG318067 NXPV_010_B04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_B04 5' similar to Arabidopsis
thaliana sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 62 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 111
>gb|BG318184.1|BG318184 NXPV_011_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_011_E02 5' similar to Arabidopsis
thaliana sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 514
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 62 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 111
>gb|BI397846.1|BI397846 NXPV_108_D10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_108_D10 5' similar to Arabidopsis
thaliana sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 24 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 73
>gb|BQ291482.1|BQ291482 NXRV059_F08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV059_F08 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 618
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 342 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 391
>gb|BQ702181.1|BQ702181 NXSI_125_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_125_H02 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 410
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 324 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 373
>gb|CD028483.1|CD028483 NXSI_119_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_119_E06 5' similar to Arabidopsis thaliana
sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 510
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 146 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 195
>gb|CO367450.1|CO367450 RTK1_34_H04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_34_H04_A029 3', mRNA sequence
Length = 712
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 344 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 295
>gb|CO367532.1|CO367532 RTK1_34_H04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_34_H04_A029 5', mRNA sequence
Length = 680
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 310 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 261
>gb|CX649429.1|CX649429 COLD1_35_E12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_E12_A029 3', mRNA sequence
Length = 733
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 294 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 343
>gb|CX649512.1|CX649512 COLD1_35_E12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_E12_A029 5', mRNA sequence
Length = 795
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 321 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 370
>gb|DR050573.1|DR050573 RTBOR1_24_H06.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_H06_A029 3', mRNA sequence
Length = 531
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 208 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 257
>gb|DR050658.1|DR050658 RTBOR1_24_H06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_H06_A029 5', mRNA sequence
Length = 664
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 320 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 369
>gb|DR089861.1|DR089861 RTAL1_11_F04.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_11_F04_A029 3', mRNA sequence
Length = 787
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 425 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 474
>gb|DR092369.1|DR092369 STRR1_1_A09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A09_A033 3', mRNA sequence
Length = 661
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 310 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 359
>gb|DR092449.1|DR092449 STRR1_1_A09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A09_A033 5', mRNA sequence
Length = 662
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 278 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 327
>gb|DR111320.1|DR111320 RTS1_16_H04.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_H04_A029 5', mRNA sequence
Length = 729
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 296 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 345
>gb|DR117021.1|DR117021 RTMG1_4_F03.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_F03_A029 3', mRNA sequence
Length = 715
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 263 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 312
>gb|DR120307.1|DR120307 RTMG1_28_G09.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_28_G09_A029 5', mRNA sequence
Length = 669
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 328 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 377
>gb|DR385301.1|DR385301 RTHG1_7_G09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_7_G09_A029 5', mRNA sequence
Length = 596
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 292 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 243
>gb|DR745683.1|DR745683 RTCU1_31_D06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_31_D06_A029 5', mRNA sequence
Length = 459
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || ||||||| |||||||||||
Sbjct: 336 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 385
>gb|BX677557.1|BX677557 BX677557 RN Pinus pinaster cDNA clone RN41B08, mRNA sequence
Length = 460
Score = 50.1 bits (25), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 389 ccctgctacaacaactggaaaaccaaggaaggagggcccaagtgcccct 437
|||||||||||||||||||| || || |||| || |||||||||||||
Sbjct: 26 ccctgctacaacaactggaagactcagcaaggcggccccaagtgcccct 74
>gb|CX650267.1|CX650267 COLD1_44_C04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_C04_A029 5', mRNA sequence
Length = 788
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| |||||||||||||||||||||||
Sbjct: 244 ggcggaggcggaggcggaggcggaggcag 216
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggc 217
|||||||||||||||||||||
Sbjct: 274 ggcggaggcggaggcggaggc 254
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcgga 214
||||| ||||||||||||||||||
Sbjct: 274 ggcggaggcggaggcggaggcgga 251
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 238 ggcggaggcggaggcggaggcagaggc 212
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 232 ggcggaggcggaggcagaggcggaggc 206
>gb|DN461769.1|DN461769 EST957568 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIE20 5' end, mRNA sequence
Length = 857
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| |||||||||||||||||||||||
Sbjct: 498 ggcggaggcggaggcggaggcggaggcag 526
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 197 ggcggaggcggaggcggagg 216
||||||||||||||||||||
Sbjct: 540 ggcggaggcggaggcggagg 559
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 504 ggcggaggcggaggcggaggcagaggc 530
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 199 cggaggcggaggcggaggc 217
|||||||||||||||||||
Sbjct: 470 cggaggcggaggcggaggc 488
>gb|DT627038.1|DT627038 EST1160114 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAU17 5' end, mRNA sequence
Length = 875
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| |||||||||||||||||||||||
Sbjct: 498 ggcggaggcggaggcggaggcggaggcag 526
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 197 ggcggaggcggaggcggagg 216
||||||||||||||||||||
Sbjct: 540 ggcggaggcggaggcggagg 559
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 504 ggcggaggcggaggcggaggcagaggc 530
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 199 cggaggcggaggcggaggc 217
|||||||||||||||||||
Sbjct: 470 cggaggcggaggcggaggc 488
>gb|AW042801.1|AW042801 ST25E10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST25E10, mRNA sequence
Length = 595
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgcccct 437
||||| ||||||||||||||||| || || |||| || |||||||||||||
Sbjct: 361 tgcccttgctacaacaactggaagactcagcaaggcggccccaagtgcccct 412
>gb|AW981873.1|AW981873 PC19F11 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC19F11, mRNA sequence
Length = 487
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgcccct 437
||||| ||||||||||||||||| || || |||| || |||||||||||||
Sbjct: 254 tgcccttgctacaacaactggaagactcagcaaggcggccccaagtgcccct 305
>gb|BG275492.1|BG275492 NXSI_139_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_139_E06 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 489
Score = 48.1 bits (24), Expect = 5e-004
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || |||||| |||||||||||
Sbjct: 334 tgcccttgctacaacaactggaagactcagcaaggagnncccaagtgccc 383
>gb|BF221003.1|BF221003 NXCI_153_F11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_153_F11 5', mRNA sequence
Length = 394
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 283 ggcggaggcggaggcggaggcag 261
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 271 ggcggaggcagaggcggaggcggaggcag 243
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 295 ggcggaggcagaggcggaggcggaggc 269
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 283 ggcggaggcggaggcggaggcagaggc 257
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 277 ggcggaggcggaggcagaggcggaggc 251
>gb|BQ702060.1|BQ702060 NXSI_123_H06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_123_H06 5', mRNA sequence
Length = 428
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 286 ggcggaggcggaggcggaggcag 264
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 274 ggcggaggcagaggcggaggcggaggcag 246
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 298 ggcggaggcagaggcggaggcggaggc 272
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 286 ggcggaggcggaggcggaggcagaggc 260
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 280 ggcggaggcggaggcagaggcggaggc 254
>gb|CD028509.1|CD028509 NXSI_119_G09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_119_G09 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 300 ggcggaggcggaggcggaggcag 278
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 288 ggcggaggcagaggcggaggcggaggcag 260
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 312 ggcggaggcagaggcggaggcggaggc 286
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 300 ggcggaggcggaggcggaggcagaggc 274
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 294 ggcggaggcggaggcagaggcggaggc 268
>gb|CF387261.1|CF387261 RTDR1_11_C04.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_C04_A015 5', mRNA
sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 292 ggcggaggcggaggcggaggcag 270
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 280 ggcggaggcagaggcggaggcggaggcag 252
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 304 ggcggaggcagaggcggaggcggaggc 278
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 292 ggcggaggcggaggcggaggcagaggc 266
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 286 ggcggaggcggaggcagaggcggaggc 260
>gb|CF392372.1|CF392372 RTDR3_7_A09.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_A09_A022 5', mRNA
sequence
Length = 563
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 263 ggcggaggcggaggcggaggcag 241
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 251 ggcggaggcagaggcggaggcggaggcag 223
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 275 ggcggaggcagaggcggaggcggaggc 249
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 263 ggcggaggcggaggcggaggcagaggc 237
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 257 ggcggaggcggaggcagaggcggaggc 231
>gb|CF473794.1|CF473794 RTWW2_4_A05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_A05_A021 5', mRNA sequence
Length = 734
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 225 ggcggaggcggaggcggaggcag 203
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 199 cggaggcggaggcggaggc 217
|||||||||||||||||||
Sbjct: 253 cggaggcggaggcggaggc 235
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 225 ggcggaggcggaggcggaggcagaggc 199
>gb|CF477758.1|CF477758 RTWW3_9_G04.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_G04_A022 5', mRNA sequence
Length = 713
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 152 ggcggaggcggaggcggaggcag 130
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 140 ggcggaggcagaggcggaggcggaggcag 112
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 164 ggcggaggcagaggcggaggcggaggc 138
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 152 ggcggaggcggaggcggaggcagaggc 126
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 146 ggcggaggcggaggcagaggcggaggc 120
>gb|DR053248.1|DR053248 RTCA1_9_H08.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_H08_A029 5', mRNA sequence
Length = 559
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 276 ggcggaggcggaggcggaggcag 254
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 264 ggcggaggcagaggcggaggcggaggcag 236
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 288 ggcggaggcagaggcggaggcggaggc 262
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 276 ggcggaggcggaggcggaggcagaggc 250
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 270 ggcggaggcggaggcagaggcggaggc 244
>gb|DR079108.1|DR079108 RTFEPL1_9_D04.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_D04_A029 3', mRNA sequence
Length = 855
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 503 ggcggaggcggaggcggaggcag 525
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 515 ggcggaggcagaggcggaggcggaggcag 543
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 509 ggcggaggcggaggcagaggcggaggc 535
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 503 ggcggaggcggaggcggaggcagaggc 529
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 491 ggcggaggcagaggcggaggcggaggc 517
>gb|DR079180.1|DR079180 RTFEPL1_9_D04.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_9_D04_A029 5', mRNA sequence
Length = 812
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 626 ggcggaggcggaggcggaggcag 648
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 638 ggcggaggcagaggcggaggcggaggcag 666
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 632 ggcggaggcggaggcagaggcggaggc 658
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 626 ggcggaggcggaggcggaggcagaggc 652
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 614 ggcggaggcagaggcggaggcggaggc 640
>gb|DR101494.1|DR101494 STRR1_73_C07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_73_C07_A033 5', mRNA sequence
Length = 416
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 234 ggcggaggcggaggcggaggcag 212
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 222 ggcggaggcagaggcggaggcggaggcag 194
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 246 ggcggaggcagaggcggaggcggaggc 220
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 234 ggcggaggcggaggcggaggcagaggc 208
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 228 ggcggaggcggaggcagaggcggaggc 202
>gb|DR111325.1|DR111325 RTS1_16_H12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_H12_A029 5', mRNA sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 324 ggcggaggcggaggcggaggcag 302
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 312 ggcggaggcagaggcggaggcggaggcag 284
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 336 ggcggaggcagaggcggaggcggaggc 310
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 324 ggcggaggcggaggcggaggcagaggc 298
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 318 ggcggaggcggaggcagaggcggaggc 292
>gb|DR120126.1|DR120126 RTMG1_27_E03.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_27_E03_A029 5', mRNA sequence
Length = 634
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 264 ggcggaggcggaggcggaggcag 242
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 252 ggcggaggcagaggcggaggcggaggcag 224
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 276 ggcggaggcagaggcggaggcggaggc 250
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 264 ggcggaggcggaggcggaggcagaggc 238
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 258 ggcggaggcggaggcagaggcggaggc 232
>gb|DR386373.1|DR386373 RTHG1_14_E11.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_14_E11_A029 5', mRNA sequence
Length = 786
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggcag 219
|||||||||||||||||||||||
Sbjct: 141 ggcggaggcggaggcggaggcag 119
Score = 42.1 bits (21), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggcag 219
||||| ||| |||||||||||||||||||
Sbjct: 129 ggcggaggcagaggcggaggcggaggcag 101
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||| |||||||||||||||||
Sbjct: 153 ggcggaggcagaggcggaggcggaggc 127
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||| |||||
Sbjct: 141 ggcggaggcggaggcggaggcagaggc 115
Score = 38.2 bits (19), Expect = 0.44
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggaggc 217
||||| ||||||||| |||||||||||
Sbjct: 135 ggcggaggcggaggcagaggcggaggc 109
>gb|AA556210.1|AA556210 65 Loblolly pine N Pinus taeda cDNA clone 2N9H, mRNA sequence
Length = 554
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggagg 216
||||| ||||||||||||||||||||
Sbjct: 154 ggcggtggcggaggcggaggcggagg 129
>gb|BX249133.1|BX249133 BX249133 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP020D05 similar to GIBBERELLIN REGULATED
PROTEIN, mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || |||| || |||||||||||
Sbjct: 337 tgcccttgctacaacaactggaagactcagcaaggcggccccaagtgccc 386
>gb|BX250252.1|BX250252 BX250252 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034D01 similar to GIBBERELLIN REGULATED
PROTEIN, mRNA sequence
Length = 622
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| || || |||| || |||||||||||
Sbjct: 338 tgcccttgctacaacaactggaagactcagcaaggcggccccaagtgccc 387
>gb|BX252050.1|BX252050 BX252050 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP059A03, mRNA sequence
Length = 657
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 191 ggcggcggcggaggcggaggcggagg 216
||||| ||||||||||||||||||||
Sbjct: 176 ggcggaggcggaggcggaggcggagg 151
Score = 42.1 bits (21), Expect = 0.028
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 197 ggcggaggcggaggcggaggc 217
|||||||||||||||||||||
Sbjct: 176 ggcggaggcggaggcggaggc 156
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,841
Number of Sequences: 355925
Number of extensions: 73841
Number of successful extensions: 20462
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 93
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19970
Number of HSP's gapped (non-prelim): 420
length of query: 654
length of database: 217,277,237
effective HSP length: 19
effective length of query: 635
effective length of database: 210,514,662
effective search space: 133676810370
effective search space used: 133676810370
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)