BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF665105.1|CF665105 RTCNT1_14_A11.b1_A029 Root control P... 100 2e-019
gb|DR743729.1|DR743729 RTCU1_17_G02.g1_A029 Roots plus adde... 100 2e-019
gb|CF397205.1|CF397205 RTDS3_2_D11.b2_A022 Drought-stressed... 72 4e-011
gb|CF397297.1|CF397297 RTDS3_2_D11.g1_A022 Drought-stressed... 64 9e-009
gb|AW461254.1|AW461254 NXNV060C07F Nsf Xylem Normal wood Ve... 40 0.12
gb|AW869995.1|AW869995 NXNV_120_G11_F Nsf Xylem Normal wood... 40 0.12
gb|CD027684.1|CD027684 NXNV060C07 Nsf Xylem Normal wood Ver... 40 0.12
gb|CF400261.1|CF400261 RTWW1_4_D05.b1_A015 Well-watered lob... 40 0.12
gb|CF400358.1|CF400358 RTWW1_4_D05.g1_A015 Well-watered lob... 40 0.12
>gb|CF665105.1|CF665105 RTCNT1_14_A11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_14_A11_A029 3', mRNA sequence
Length = 773
Score = 99.6 bits (50), Expect = 2e-019
Identities = 128/154 (83%)
Strand = Plus / Plus
Query: 164 cagatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctga 223
|||||||| |||| || || |||||||| | ||||| || || |||||||||||| | |
Sbjct: 386 cagatgttgacattgatgaagttgctcgccgcacagagggatacagtggagatgatttaa 445
Query: 224 caaacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagaccc 283
|||| ||||| || ||||| || ||||||||||||||||| ||||| ||||| ||||| |
Sbjct: 446 caaatgtttgtcgggatgcatccatgaatggcatgaggcgaaagattgcagggaagactc 505
Query: 284 gcgacgagatcaagaacatgtcaaaggacgagat 317
| || ||||| ||||| ||||||||||| |||||
Sbjct: 506 gtgatgagataaagaatatgtcaaaggatgagat 539
Score = 63.9 bits (32), Expect = 9e-009
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
||||| || ||||| ||||| ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 232 aaaatagtaatggtgctggcagctacaaatttcccatgggatatcgatgaagctctcagg 291
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttga 113
|| |||| |||||| | |||||||| || ||||| | ||||||
Sbjct: 292 agacggctagagaagagaatttatatacctcttccggcttttga 335
>gb|DR743729.1|DR743729 RTCU1_17_G02.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_17_G02_A029 5', mRNA sequence
Length = 712
Score = 99.6 bits (50), Expect = 2e-019
Identities = 128/154 (83%)
Strand = Plus / Plus
Query: 164 cagatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctga 223
|||||||| |||| || || |||||||| | ||||| || || |||||||||||| | |
Sbjct: 170 cagatgttgacattgatgaagttgctcgccgcacagagggatacagtggagatgatttaa 229
Query: 224 caaacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagaccc 283
|||| ||||| || ||||| || ||||||||||||||||| ||||| ||||| ||||| |
Sbjct: 230 caaatgtttgtcgggatgcatccatgaatggcatgaggcgaaagattgcagggaagactc 289
Query: 284 gcgacgagatcaagaacatgtcaaaggacgagat 317
| || ||||| ||||| ||||||||||| |||||
Sbjct: 290 gtgatgagataaagaatatgtcaaaggatgagat 323
Score = 61.9 bits (31), Expect = 3e-008
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 19 atggttctggctgctacaaattttccatgggatattgatgaggcactgaggcgaaggctg 78
||||| ||||| ||||||||||| ||||||||||| ||||| || || ||| || ||||
Sbjct: 25 atggtgctggcagctacaaatttcccatgggatatcgatgaagctctcaggagacggcta 84
Query: 79 gagaagcgtatttatattccacttccagattttga 113
|||||| | |||||||| || ||||| | ||||||
Sbjct: 85 gagaagagaatttatatacctcttccggcttttga 119
>gb|CF397205.1|CF397205 RTDS3_2_D11.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_D11_A022 3', mRNA sequence
Length = 788
Score = 71.9 bits (36), Expect = 4e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 238 gatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaag 297
||||| || ||||||||||||||||| ||||| ||||| ||||| || || ||||| |||
Sbjct: 5 gatgcatccatgaatggcatgaggcgaaagattgcagggaagactcgtgatgagataaag 64
Query: 298 aacatgtcaaaggacgagat 317
|| ||||||||||| |||||
Sbjct: 65 aatatgtcaaaggatgagat 84
>gb|CF397297.1|CF397297 RTDS3_2_D11.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_D11_A022 5', mRNA sequence
Length = 799
Score = 63.9 bits (32), Expect = 9e-009
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 10 aaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgagg 69
||||| || ||||| ||||| ||||||||||| ||||||||||| ||||| || || |||
Sbjct: 550 aaaatagtaatggtgctggcagctacaaatttcccatgggatatcgatgaagctctcagg 609
Query: 70 cgaaggctggagaagcgtatttatattccacttccagattttga 113
|| |||| |||||| | |||||||| || ||||| | ||||||
Sbjct: 610 agacggctagagaagagaatttatatacctcttccggcttttga 653
Score = 56.0 bits (28), Expect = 2e-006
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 164 cagatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctga 223
|||||||| |||| || || |||||||| | ||||| || || |||||||||||| | |
Sbjct: 704 cagatgttgacattgatgaagttgctcgccgcacagagggatacagtggagatgatttaa 763
Query: 224 caaacgtttgccgcgatgcctcaatgaatggcatga 259
|||| ||||| || ||||| || |||||||||||||
Sbjct: 764 caaatgtttgtcgggatgcatccatgaatggcatga 799
>gb|AW461254.1|AW461254 NXNV060C07F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV060C07 5', mRNA sequence
Length = 235
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 397 gagaagcatgagaagtggatggct 420
||||||| ||||||||||||||||
Sbjct: 174 gagaagcttgagaagtggatggct 197
>gb|AW869995.1|AW869995 NXNV_120_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_120_G11 5' similar to Arabidopsis thaliana
sequence At2g41460 DNA-(apurinic or apyrimidinic site)
lyase (ARP) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 397 gagaagcatgagaagtggatggct 420
||||||| ||||||||||||||||
Sbjct: 174 gagaagcttgagaagtggatggct 197
>gb|CD027684.1|CD027684 NXNV060C07 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV060C07 5', mRNA sequence
Length = 235
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 397 gagaagcatgagaagtggatggct 420
||||||| ||||||||||||||||
Sbjct: 174 gagaagcttgagaagtggatggct 197
>gb|CF400261.1|CF400261 RTWW1_4_D05.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_D05_A015 3', mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 69 gcgaaggctggagaagcgtatttatattccacttcc 104
||||||| | ||||| ||||| ||||||||||||||
Sbjct: 98 gcgaaggttcgagaaacgtatctatattccacttcc 63
>gb|CF400358.1|CF400358 RTWW1_4_D05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_D05_A015 5', mRNA sequence
Length = 773
Score = 40.1 bits (20), Expect = 0.12
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 69 gcgaaggctggagaagcgtatttatattccacttcc 104
||||||| | ||||| ||||| ||||||||||||||
Sbjct: 502 gcgaaggttcgagaaacgtatctatattccacttcc 467
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,204
Number of Sequences: 355925
Number of extensions: 79204
Number of successful extensions: 22806
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22794
Number of HSP's gapped (non-prelim): 12
length of query: 738
length of database: 217,277,237
effective HSP length: 19
effective length of query: 719
effective length of database: 210,514,662
effective search space: 151360041978
effective search space used: 151360041978
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)