BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161295.2.1
(1475 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO367783.1|CO367783 RTK1_36_C12.g1_A029 Roots minus pota... 214 8e-054
gb|DR684166.1|DR684166 EST1074243 Normalized pine embryo li... 190 1e-046
gb|BX254051.1|BX254051 BX254051 Pinus pinaster differenciat... 125 6e-027
gb|BX255353.1|BX255353 BX255353 Pinus pinaster differenciat... 125 6e-027
gb|BE496383.1|BE496383 NXCI_017_A02_F NXCI (Nsf Xylem Compr... 119 3e-025
gb|CF479544.1|CF479544 RTWW3_22_G10.g1_A022 Well-watered lo... 119 3e-025
gb|DR092788.1|DR092788 STRR1_4_A12.b1_A033 Stem Response Re... 119 3e-025
gb|DR691657.1|DR691657 EST1081744 Normalized pine embryo li... 119 3e-025
gb|DT631983.1|DT631983 EST1146914 Normalized pine embryo li... 119 3e-025
gb|BG526951.1|BG526951 NXPV_057_G05_F NXPV (Nsf Xylem Plani... 117 1e-024
gb|BG317512.1|BG317512 NXPV_002_F10_F NXPV (Nsf Xylem Plani... 115 5e-024
gb|BQ697805.1|BQ697805 NXPV_061_A10_F NXPV (Nsf Xylem Plani... 115 5e-024
gb|BQ700846.1|BQ700846 NXRV112_B12_F NXRV (Nsf Xylem Root w... 115 5e-024
gb|DR684272.1|DR684272 EST1074349 Normalized pine embryo li... 111 8e-023
gb|DR100307.1|DR100307 STRR1_63_E02.b1_A033 Stem Response R... 109 3e-022
gb|BQ696316.1|BQ696316 NXPV_037_H09_F NXPV (Nsf Xylem Plani... 105 5e-021
gb|BQ696619.1|BQ696619 NXPV_043_C09_F NXPV (Nsf Xylem Plani... 105 5e-021
gb|BQ696304.1|BQ696304 NXPV_037_G06_F NXPV (Nsf Xylem Plani... 103 2e-020
gb|DR081469.1|DR081469 RTFEPL1_29_G11.g1_A029 Roots plus ad... 100 3e-019
gb|BI202802.1|BI202802 NXPV_090_F11_F NXPV (Nsf Xylem Plani... 94 2e-017
gb|DR079802.1|DR079802 RTFEPL1_17_F12.g1_A029 Roots plus ad... 88 1e-015
gb|DR092855.1|DR092855 STRR1_4_A12.g1_A033 Stem Response Re... 88 1e-015
gb|BM492654.1|BM492654 NXRV_029_B09_F NXRV (Nsf Xylem Root ... 84 2e-014
gb|DR384279.1|DR384279 RTHG1_1_E12.b1_A029 Roots plus added... 84 2e-014
gb|DR682085.1|DR682085 EST1072160 Normalized pine embryo li... 84 2e-014
gb|AW758946.1|AW758946 NXNV_095_F06_F Nsf Xylem Normal wood... 82 7e-014
gb|BQ654839.1|BQ654839 NXRV086_D03_F NXRV (Nsf Xylem Root w... 74 2e-011
gb|DR056998.1|DR056998 RTNIT1_1_H09.g1_A029 Roots minus nit... 72 7e-011
gb|CD025271.1|CD025271 NXSI_035_G08_F NXSI (Nsf Xylem Side ... 68 1e-009
gb|CD025786.1|CD025786 NXSI_081_C08_F NXSI (Nsf Xylem Side ... 68 1e-009
gb|BX255109.1|BX255109 BX255109 Pinus pinaster differenciat... 60 3e-007
gb|BX253417.1|BX253417 BX253417 Pinus pinaster differenciat... 60 3e-007
gb|BE644028.1|BE644028 NXCI_053_G03_F NXCI (Nsf Xylem Compr... 60 3e-007
gb|BF186163.1|BF186163 NXCI_133_G06_F NXCI (Nsf Xylem Compr... 60 3e-007
gb|BF610263.1|BF610263 NXSI_057_B05_F NXSI (Nsf Xylem Side ... 60 3e-007
gb|BX676890.1|BX676890 BX676890 RN Pinus pinaster cDNA clon... 60 3e-007
gb|CO162913.1|CO162913 FLD1_38_G02.b1_A029 Root flooded Pin... 60 3e-007
gb|CO166920.1|CO166920 FLD1_65_A12.g1_A029 Root flooded Pin... 60 3e-007
gb|CO169434.1|CO169434 NDL1_7_B11.b1_A029 Needles control P... 60 3e-007
gb|CO169507.1|CO169507 NDL1_7_B11.g1_A029 Needles control P... 60 3e-007
gb|CV033876.1|CV033876 RTNACL1_37_D08.b1_A029 Roots plus ad... 60 3e-007
gb|CX650237.1|CX650237 COLD1_44_H04.b1_A029 Root cold Pinus... 60 3e-007
gb|DR055465.1|DR055465 RTCA1_23_G10.g2_A029 Roots minus cal... 60 3e-007
gb|BX254458.1|BX254458 BX254458 Pinus pinaster differenciat... 58 1e-006
gb|BG319377.1|BG319377 NXPV_027_B04_F NXPV (Nsf Xylem Plani... 58 1e-006
gb|CD024484.1|CD024484 NXRV_043_D06_F NXRV (Nsf Xylem Root ... 58 1e-006
gb|BF518118.1|BF518118 NXSI_035_C02_F NXSI (Nsf Xylem Side ... 56 4e-006
gb|CO168770.1|CO168770 NDL1_2_A02.g1_A029 Needles control P... 50 3e-004
gb|CV033955.1|CV033955 RTNACL1_37_D08.g1_A029 Roots plus ad... 50 3e-004
gb|DR079740.1|DR079740 RTFEPL1_17_F12.b1_A029 Roots plus ad... 50 3e-004
gb|BI397899.1|BI397899 NXPV_110_G05_F NXPV (Nsf Xylem Plani... 48 0.001
gb|BM492831.1|BM492831 NXRV_031_E12_F NXRV (Nsf Xylem Root ... 48 0.001
gb|CD024512.1|CD024512 NXRV_044_A01_F NXRV (Nsf Xylem Root ... 48 0.001
gb|AW758792.1|AW758792 NXNV_089_G04_F Nsf Xylem Normal wood... 40 0.25
gb|AW888189.1|AW888189 NXNV_105_F12_F Nsf Xylem Normal wood... 40 0.25
gb|DR118566.1|DR118566 RTMG1_17_G05.g1_A029 Roots minus mag... 40 0.25
gb|DR072662.1|DR072662 RTDK1_27_F10.g1_A029 Roots, dark Pin... 38 1.00
>gb|CO367783.1|CO367783 RTK1_36_C12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_C12_A029 5', mRNA sequence
Length = 792
Score = 214 bits (108), Expect = 8e-054
Identities = 276/332 (83%)
Strand = Plus / Minus
Query: 626 atcagaccctcaaccagatcagaaacatattggaaactcctggtttgctttccatcacca 685
||||| || ||||||| |||||||||||| || || |||| ||||| || || ||||||
Sbjct: 372 atcagtccatcaaccaaatcagaaacatactgaaagctccgtgtttgtttaccgtcacca 313
Query: 686 taaaccgtcaagggctccttcctcagtgcctgagcaacaaagttactgacaacacggcca 745
||||| ||||| || || || | ||||||||||||||||||||| || ||||||||||||
Sbjct: 312 taaactgtcaaaggttctttgcgcagtgcctgagcaacaaagttgctaacaacacggcca 253
Query: 746 tcgtcaatgcacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaagg 805
|| || |||||||| | || |||||||| ||||| |||||||| || | ||||| |
Sbjct: 252 tcatcgatgcacattctgggtccatatgtgttgaatatacgtgcaatgcggacctccaca 193
Query: 806 ttggcaccacggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaa 865
||||| || ||||| || ||||| ||||| || ||||||||||| ||||||||||| |||
Sbjct: 192 ttggccccccggtgatagtccatcgtcaaagtctcagctgtacgtttgccctcatcataa 133
Query: 866 cagctcctgacaccgatgggattgacattgccccagtaagtctccacctgcgggtgctgg 925
||||| || |||||||| ||||||||||| ||||| || |||||| ||| || ||||||
Sbjct: 132 cagcttctaacaccgataggattgacatttccccaatatgtctccgtctgtggatgctgg 73
Query: 926 agaggatcaccatagacctcactggtactggt 957
|||||||| ||||| |||||||| ||||||||
Sbjct: 72 agaggatccccatatacctcacttgtactggt 41
>gb|DR684166.1|DR684166 EST1074243 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP61 3' end, mRNA sequence
Length = 736
Score = 190 bits (96), Expect = 1e-046
Identities = 273/332 (82%)
Strand = Plus / Minus
Query: 626 atcagaccctcaaccagatcagaaacatattggaaactcctggtttgctttccatcacca 685
||||| || ||||||| |||||||||||| || || || | ||||| || || ||||||
Sbjct: 453 atcagtccatcaaccaaatcagaaacatactgaaagctacgtgtttgtttaccgtcacca 394
Query: 686 taaaccgtcaagggctccttcctcagtgcctgagcaacaaagttactgacaacacggcca 745
||||| ||||| || || || | ||||||||||||||||||||| || ||||||||| ||
Sbjct: 393 taaactgtcaaaggttctttgcgcagtgcctgagcaacaaagttgctaacaacacggtca 334
Query: 746 tcgtcaatgcacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaagg 805
|| || |||||||| | || |||||||| ||||| |||||||| || | ||||| |
Sbjct: 333 tcatcgatgcacattctgggtccatatgtgttgaatatacgtgcaatgcggacctccaca 274
Query: 806 ttggcaccacggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaa 865
||||| || ||||| || ||||| ||||| || ||||||||||| ||||||||||| |||
Sbjct: 273 ttggccccccggtgatagtccatcgtcaaagtctcagctgtacgtttgccctcatcataa 214
Query: 866 cagctcctgacaccgatgggattgacattgccccagtaagtctccacctgcgggtgctgg 925
||||| || ||||| || ||||||||||| ||||| || |||||| ||| || ||||||
Sbjct: 213 cagcttctaacacctataggattgacatttccccaatatgtctccgtctgtggatgctgg 154
Query: 926 agaggatcaccatagacctcactggtactggt 957
|||||||| ||||| |||||||| ||||||||
Sbjct: 153 agaggatccccatatacctcacttgtactggt 122
>gb|BX254051.1|BX254051 BX254051 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092F08 similar to DTDP GLUCOSE 4,6
DEHYDRATASE, mRNA sequence
Length = 692
Score = 125 bits (63), Expect = 6e-027
Identities = 219/271 (80%)
Strand = Plus / Minus
Query: 635 tcaaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtc 694
||||||||||||||||| | |||||||||| || || || ||||| ||||| || |||
Sbjct: 403 tcaaccagatcagaaacgaactggaaactccgtgtctgtttcccatctccatagactgtc 344
Query: 695 aagggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|| |||||||| | || |||||||||||||| ||||| ||||| || ||||| |||| |
Sbjct: 343 aaaggctccttgcgcaaagcctgagcaacaaaattacttacaacccgaccatcatcaagg 284
Query: 755 cacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcacca 814
||||| || || || ||||||||||| || || || |||| |||||||| || || ||
Sbjct: 283 cacattcgcggaccgtatgtattgaaaattcgagcaatccgaacctcaacatttgctccc 224
Query: 815 cggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctg 874
| ||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | |
Sbjct: 223 ctgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgg 164
Query: 875 acaccgatgggattgacattgccccagtaag 905
|| ||||||||||| ||||||||||||||||
Sbjct: 163 actccgatgggattaacattgccccagtaag 133
>gb|BX255353.1|BX255353 BX255353 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP004G08 similar to DTDP GLUCOSE 4,6
DEHYDRATASE, mRNA sequence
Length = 495
Score = 125 bits (63), Expect = 6e-027
Identities = 219/271 (80%)
Strand = Plus / Minus
Query: 635 tcaaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtc 694
||||||||||||||||| | |||||||||| || || || ||||| ||||| || |||
Sbjct: 312 tcaaccagatcagaaacgaactggaaactccgtgtctgtttcccatctccatagactgtc 253
Query: 695 aagggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|| |||||||| | || |||||||||||||| ||||| ||||| || ||||| |||| |
Sbjct: 252 aaaggctccttgcgcaaagcctgagcaacaaaattacttacaacccgaccatcatcaagg 193
Query: 755 cacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcacca 814
||||| || || || ||||||||||| || || || |||| |||||||| || || ||
Sbjct: 192 cacattcgcggaccgtatgtattgaaaattcgagcaatccgaacctcaacatttgctccc 133
Query: 815 cggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctg 874
| ||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | |
Sbjct: 132 ctgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgg 73
Query: 875 acaccgatgggattgacattgccccagtaag 905
|| ||||||||||| ||||||||||||||||
Sbjct: 72 actccgatgggattaacattgccccagtaag 42
>gb|BE496383.1|BE496383 NXCI_017_A02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_A02 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 567
Score = 119 bits (60), Expect = 3e-025
Identities = 183/224 (81%)
Strand = Plus / Minus
Query: 626 atcagaccctcaaccagatcagaaacatattggaaactcctggtttgctttccatcacca 685
||||| || ||||||| |||||||||||| || || |||| ||||| || || ||||||
Sbjct: 228 atcagtccatcaaccaaatcagaaacatactgaaagctccgtgtttgtttaccgtcacca 169
Query: 686 taaaccgtcaagggctccttcctcagtgcctgagcaacaaagttactgacaacacggcca 745
||||| ||||| || || || | ||||||||||||||||||||| || ||||||||||||
Sbjct: 168 taaactgtcaaaggttctttgcgcagtgcctgagcaacaaagttgctaacaacacggcca 109
Query: 746 tcgtcaatgcacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaagg 805
|| || |||||||| | || |||||||| ||||| |||||||| || | ||||| |
Sbjct: 108 tcatcgatgcacattctgggtccatatgtgttgaatatacgtgcaatgcggacctccaca 49
Query: 806 ttggcaccacggtggtaatccatggtcaacgtttcagctgtacg 849
||||| || ||||| || ||||| ||||| || |||||||||||
Sbjct: 48 ttggccccccggtgatagtccatcgtcaaagtctcagctgtacg 5
>gb|CF479544.1|CF479544 RTWW3_22_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_22_G10_A022 5', mRNA sequence
Length = 716
Score = 119 bits (60), Expect = 3e-025
Identities = 252/316 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 417 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 358
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 357 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 298
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 297 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 238
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatg 829
||||||||||| || || || |||| |||||||| || || || | ||| ||||||||
Sbjct: 237 tatgtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccata 178
Query: 830 gtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccgatgggattg 889
|||| ||||| ||||| | ||| |||||||| || || || | ||| |||||||||||
Sbjct: 177 gtcagagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggatta 118
Query: 890 acattgccccagtaag 905
||||||||||||||||
Sbjct: 117 acattgccccagtaag 102
>gb|DR092788.1|DR092788 STRR1_4_A12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_4_A12_A033 3', mRNA sequence
Length = 898
Score = 119 bits (60), Expect = 3e-025
Identities = 252/316 (79%)
Strand = Plus / Plus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 520 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 579
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 580 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 639
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 640 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 699
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatg 829
||||||||||| || || || |||| |||||||| || || || | ||| ||||||||
Sbjct: 700 tatgtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccata 759
Query: 830 gtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccgatgggattg 889
|||| ||||| ||||| | ||| |||||||| || || || | ||| |||||||||||
Sbjct: 760 gtcagagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggatta 819
Query: 890 acattgccccagtaag 905
||||||||||||||||
Sbjct: 820 acattgccccagtaag 835
>gb|DR691657.1|DR691657 EST1081744 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADB24 3' end, mRNA sequence
Length = 831
Score = 119 bits (60), Expect = 3e-025
Identities = 252/316 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 677 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 618
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 617 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 558
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 557 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 498
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatg 829
||||||||||| || || || |||| |||||||| || || || | ||| ||||||||
Sbjct: 497 tatgtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccata 438
Query: 830 gtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccgatgggattg 889
|||| ||||| ||||| | ||| |||||||| || || || | ||| |||||||||||
Sbjct: 437 gtcagagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggatta 378
Query: 890 acattgccccagtaag 905
||||||||||||||||
Sbjct: 377 acattgccccagtaag 362
>gb|DT631983.1|DT631983 EST1146914 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFF10 3' end, mRNA sequence
Length = 817
Score = 119 bits (60), Expect = 3e-025
Identities = 252/316 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 745 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 686
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 685 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 626
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 625 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 566
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatg 829
||||||||||| || || || |||| |||||||| || || || | ||| ||||||||
Sbjct: 565 tatgtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccata 506
Query: 830 gtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccgatgggattg 889
|||| ||||| ||||| | ||| |||||||| || || || | ||| |||||||||||
Sbjct: 505 gtcagagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggatta 446
Query: 890 acattgccccagtaag 905
||||||||||||||||
Sbjct: 445 acattgccccagtaag 430
>gb|BG526951.1|BG526951 NXPV_057_G05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_057_G05 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 609
Score = 117 bits (59), Expect = 1e-024
Identities = 218/271 (80%)
Strand = Plus / Minus
Query: 635 tcaaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtc 694
||||||||||| ||||| | |||||||||| || || || ||||| ||||| || |||
Sbjct: 414 tcaaccagatcggaaacgaactggaaactccgtgtctgtttcccatctccatagactgtc 355
Query: 695 aagggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|| |||||||| | || |||||||||||||| ||||| ||||| || ||||| |||| |
Sbjct: 354 aaaggctccttgcgcaaagcctgagcaacaaaattacttacaacccgaccatcatcaagg 295
Query: 755 cacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcacca 814
||||| || || || ||||||||||| || || || |||| |||||||| || || ||
Sbjct: 294 cacattcgcggaccgtatgtattgaaaattcgggcaatccgaacctcaacatttgctccc 235
Query: 815 cggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctg 874
| ||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | |
Sbjct: 234 ctgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgg 175
Query: 875 acaccgatgggattgacattgccccagtaag 905
|| ||||||||||| ||||||||||||||||
Sbjct: 174 actccgatgggattaacattgccccagtaag 144
>gb|BG317512.1|BG317512 NXPV_002_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_F10 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 483
Score = 115 bits (58), Expect = 5e-024
Identities = 217/270 (80%)
Strand = Plus / Minus
Query: 636 caaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtca 695
|||||||||| ||||| | |||||||||| || || || ||||| ||||| || ||||
Sbjct: 413 caaccagatcggaaacgaactggaaactccgtgtctgtttcccatctccatagactgtca 354
Query: 696 agggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatgc 755
| |||||||| | || |||||||||||||| ||||| ||||| || ||||| |||| ||
Sbjct: 353 aaggctccttgcgcaaagcctgagcaacaaaattacttacaacccgaccatcatcaaggc 294
Query: 756 acatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcaccac 815
|||| || || || ||||||||||| || || || |||| |||||||| || || || |
Sbjct: 293 acattcgcggaccgtatgtattgaaaattcgggcaatccgaacctcaacatttgctcccc 234
Query: 816 ggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctga 875
||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | ||
Sbjct: 233 tgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgga 174
Query: 876 caccgatgggattgacattgccccagtaag 905
| ||||||||||| ||||||||||||||||
Sbjct: 173 ctccgatgggattaacattgccccagtaag 144
>gb|BQ697805.1|BQ697805 NXPV_061_A10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_061_A10 5' similar to Arabidopsis
thaliana sequence At3g62830 dTDP-glucose 4-6-dehydratase
homolog D18 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 509
Score = 115 bits (58), Expect = 5e-024
Identities = 217/270 (80%)
Strand = Plus / Minus
Query: 636 caaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtca 695
|||||||||| ||||| | |||||||||| || || || ||||| ||||| || ||||
Sbjct: 413 caaccagatcggaaacgaactggaaactccgtgtctgtttcccatctccatagactgtca 354
Query: 696 agggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatgc 755
| |||||||| | || |||||||||||||| ||||| ||||| || ||||| |||| ||
Sbjct: 353 aaggctccttgcgcaaagcctgagcaacaaaattacttacaacccgaccatcatcaaggc 294
Query: 756 acatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcaccac 815
|||| || || || ||||||||||| || || || |||| |||||||| || || || |
Sbjct: 293 acattcgcggaccgtatgtattgaaaattcgggcaatccgaacctcaacatttgctcccc 234
Query: 816 ggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctga 875
||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | ||
Sbjct: 233 tgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgga 174
Query: 876 caccgatgggattgacattgccccagtaag 905
| ||||||||||| ||||||||||||||||
Sbjct: 173 ctccgatgggattaacattgccccagtaag 144
>gb|BQ700846.1|BQ700846 NXRV112_B12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV112_B12 5' similar to Arabidopsis thaliana
sequence At2g47650 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 477
Score = 115 bits (58), Expect = 5e-024
Identities = 248/313 (79%)
Strand = Plus / Minus
Query: 593 aatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaaaca 652
|||||||||||||| ||| ||||| || ||| || || ||||||||||| ||||
Sbjct: 413 aatggccccacatgtnngccctccataagnngcataaggccntcaaccagatcgcaaacg 354
Query: 653 tattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctcagt 712
| |||||||||| || || || ||||| ||||| || ||||| |||||||| | ||
Sbjct: 353 aactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgcaaa 294
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggccatat 772
|||||||||||||| ||||| ||||| || ||||| |||| |||||| || || || |||
Sbjct: 293 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 234
Query: 773 gtattgaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatggtc 832
|||||||| || || || |||| |||||||| || || || | ||| |||||||| |||
Sbjct: 233 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 174
Query: 833 aacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccgatgggattgaca 892
| ||||| ||||| | ||| |||||||| || || || | ||| ||||||||||| |||
Sbjct: 173 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 114
Query: 893 ttgccccagtaag 905
|||||||||||||
Sbjct: 113 ttgccccagtaag 101
>gb|DR684272.1|DR684272 EST1074349 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAQ80 3' end, mRNA sequence
Length = 776
Score = 111 bits (56), Expect = 8e-023
Identities = 251/316 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 737 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 678
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 677 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 618
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 617 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 558
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatg 829
||||||||||| || || || |||| |||||||| || || || | ||| ||||||||
Sbjct: 557 tatgtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccata 498
Query: 830 gtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccgatgggattg 889
|||| ||||| ||||| | ||| |||||||| || || || | || |||||||||||
Sbjct: 497 gtcagagtttcggctgttctcttaccctcatcatagcaactgcgaactccgatgggatta 438
Query: 890 acattgccccagtaag 905
||||||||||||||||
Sbjct: 437 acattgccccagtaag 422
>gb|DR100307.1|DR100307 STRR1_63_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_63_E02_A033 3', mRNA sequence
Length = 830
Score = 109 bits (55), Expect = 3e-022
Identities = 247/311 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 311 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 252
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 251 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 192
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 191 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 132
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatg 829
||||||||||| || || || |||| |||||||| || || || | ||| ||||||||
Sbjct: 131 tatgtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccata 72
Query: 830 gtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccgatgggattg 889
|||| ||||| ||||| | ||| |||||||| || || || | ||| |||||||||||
Sbjct: 71 gtcagagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggatta 12
Query: 890 acattgcccca 900
|||||||||||
Sbjct: 11 acattgcccca 1
>gb|BQ696316.1|BQ696316 NXPV_037_H09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_H09 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 487
Score = 105 bits (53), Expect = 5e-021
Identities = 216/271 (79%)
Strand = Plus / Minus
Query: 635 tcaaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtc 694
||||||||||| ||||| | |||||||||| || || || ||||| ||||| || |||
Sbjct: 414 tcaaccagatcggaaacgaactggaaactccgtgtctgtttcccatctccatagactgtc 355
Query: 695 aagggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|| |||||||| | || |||||||||||| ||||| ||||| || ||||| |||| |
Sbjct: 354 aaaggctccttgcgcaaannctgagcaacaaaattacttacaacccgaccatcatcaagg 295
Query: 755 cacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcacca 814
||||| || || || ||||||||||| || || || |||| |||||||| || || ||
Sbjct: 294 cacattcgcggaccgtatgtattgaaaattcgggcaatccgaacctcaacatttgctccc 235
Query: 815 cggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctg 874
| ||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | |
Sbjct: 234 ctgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgg 175
Query: 875 acaccgatgggattgacattgccccagtaag 905
|| ||||||||||| ||||||||||||||||
Sbjct: 174 actccgatgggattaacattgccccagtaag 144
>gb|BQ696619.1|BQ696619 NXPV_043_C09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_043_C09 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 105 bits (53), Expect = 5e-021
Identities = 216/271 (79%)
Strand = Plus / Minus
Query: 635 tcaaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtc 694
||||||||||| ||||| | |||||||||| || || || ||||| ||||| || |||
Sbjct: 414 tcaaccagatcggaaacgaactggaaactccgtgtctgtttcccatctccatagactgtc 355
Query: 695 aagggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|| |||||||| | || |||||||||||| ||||| ||||| || ||||| |||| |
Sbjct: 354 aaaggctccttgcgcaaannctgagcaacaaaattacttacaacccgaccatcatcaagg 295
Query: 755 cacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcacca 814
||||| || || || ||||||||||| || || || |||| |||||||| || || ||
Sbjct: 294 cacattcgcggaccgtatgtattgaaaattcgggcaatccgaacctcaacatttgctccc 235
Query: 815 cggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctg 874
| ||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | |
Sbjct: 234 ctgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgg 175
Query: 875 acaccgatgggattgacattgccccagtaag 905
|| ||||||||||| ||||||||||||||||
Sbjct: 174 actccgatgggattaacattgccccagtaag 144
>gb|BQ696304.1|BQ696304 NXPV_037_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_G06 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 470
Score = 103 bits (52), Expect = 2e-020
Identities = 215/270 (79%)
Strand = Plus / Minus
Query: 636 caaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtca 695
|||||||||| ||||| | |||||||||| || || || ||||| ||||| || ||||
Sbjct: 413 caaccagatcggaaacgaactggaaactccgtgtctgtttcccatctccatagactgtca 354
Query: 696 agggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatgc 755
| |||||||| | || |||||||||||| ||||| ||||| || ||||| |||| ||
Sbjct: 353 aaggctccttgcgcaaannctgagcaacaaaattacttacaacccgaccatcatcaaggc 294
Query: 756 acatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcaccac 815
|||| || || || ||||||||||| || || || |||| |||||||| || || || |
Sbjct: 293 acattcgcggaccgtatgtattgaaaattcgggcaatccgaacctcaacatttgctcccc 234
Query: 816 ggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctga 875
||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | ||
Sbjct: 233 tgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgga 174
Query: 876 caccgatgggattgacattgccccagtaag 905
| ||||||||||| ||||||||||||||||
Sbjct: 173 ctccgatgggattaacattgccccagtaag 144
>gb|DR081469.1|DR081469 RTFEPL1_29_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_29_G11_A029 5', mRNA sequence
Length = 667
Score = 99.6 bits (50), Expect = 3e-019
Identities = 113/134 (84%)
Strand = Plus / Minus
Query: 626 atcagaccctcaaccagatcagaaacatattggaaactcctggtttgctttccatcacca 685
||||| || ||||||| |||||||||||| || || |||| ||||| || || ||||||
Sbjct: 150 atcagtccatcaaccaaatcagaaacatactgaaagctccgtgtttgtttaccgtcacca 91
Query: 686 taaaccgtcaagggctccttcctcagtgcctgagcaacaaagttactgacaacacggcca 745
||||| ||||| || || || | ||||||||||||||||||||| || ||||||||||||
Sbjct: 90 taaactgtcaaaggttctttgcgcagtgcctgagcaacaaagttgctaacaacacggcca 31
Query: 746 tcgtcaatgcacat 759
|| || ||||||||
Sbjct: 30 tcatcgatgcacat 17
>gb|BI202802.1|BI202802 NXPV_090_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_090_F11 5' similar to Arabidopsis
thaliana sequence At3g62830 dTDP-glucose 4-6-dehydratase
homolog D18 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 500
Score = 93.7 bits (47), Expect = 2e-017
Identities = 213/270 (78%)
Strand = Plus / Minus
Query: 636 caaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtca 695
|||||| ||| ||||| | |||||||||| || || || ||||| ||||| || ||||
Sbjct: 413 caaccanatcggaaacgaactggaaactccgtgtctgtttcccatctccatagactgtca 354
Query: 696 agggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatgc 755
| |||||||| | || | |||||||||| ||||| ||||| || ||||| |||| ||
Sbjct: 353 aaggctccttgcgcaannncngagcaacaaaattacttacaacccgaccatcatcaaggc 294
Query: 756 acatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaaggttggcaccac 815
|||| || || || ||||||||||| || || || |||| |||||||| || || || |
Sbjct: 293 acattcgcggaccgtatgtattgaaaattcgggcaatccgaacctcaacatttgctcccc 234
Query: 816 ggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctga 875
||| |||||||| |||| ||||| ||||| | ||| |||||||| || || || | ||
Sbjct: 233 tgtgataatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcgga 174
Query: 876 caccgatgggattgacattgccccagtaag 905
| ||||||||||| ||||||||||||||||
Sbjct: 173 ctccgatgggattaacattgccccagtaag 144
>gb|DR079802.1|DR079802 RTFEPL1_17_F12.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_17_F12_A029 5', mRNA sequence
Length = 695
Score = 87.7 bits (44), Expect = 1e-015
Identities = 152/188 (80%)
Strand = Plus / Minus
Query: 718 agcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggccatatgtatt 777
||||||||| ||||| ||||| || ||||| |||| |||||| || || || ||||||||
Sbjct: 695 agcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtatgtatt 636
Query: 778 gaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatggtcaacgt 837
||| || || || |||| |||||||| || || || | ||| |||||||| |||| ||
Sbjct: 635 gaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtcagagt 576
Query: 838 ttcagctgtacgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgcc 897
||| ||||| | ||| |||||||| || || || | ||| ||||||||||| ||||||||
Sbjct: 575 ttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaacattgcc 516
Query: 898 ccagtaag 905
||||||||
Sbjct: 515 ccagtaag 508
>gb|DR092855.1|DR092855 STRR1_4_A12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_4_A12_A033 5', mRNA sequence
Length = 885
Score = 87.7 bits (44), Expect = 1e-015
Identities = 215/272 (79%)
Strand = Plus / Plus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 603 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 662
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 663 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 722
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 723 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 782
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaaggttggcaccacggtggtaatccatg 829
||||||||||| || || || |||| |||||||| || || || | ||| ||||||||
Sbjct: 783 tatgtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccata 842
Query: 830 gtcaacgtttcagctgtacgcttgccctcatc 861
|||| ||||| ||||| | ||| ||||||||
Sbjct: 843 gtcagagtttcggctgttctcttaccctcatc 874
>gb|BM492654.1|BM492654 NXRV_029_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_029_B09 5' similar to Arabidopsis thaliana
sequence At3g62830 dTDP-glucose 4-6-dehydratase homolog
D18 see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 627
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 228 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 169
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 168 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 109
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 108 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 49
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaa 803
||||||||||| || || || |||| ||||||||
Sbjct: 48 tatgtattgaaaattcgagcaatccgaacctcaa 15
>gb|DR384279.1|DR384279 RTHG1_1_E12.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_E12_A029 3', mRNA sequence
Length = 749
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Plus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 506 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 565
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 566 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 625
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 626 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 685
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaa 803
||||||||||| || || || |||| ||||||||
Sbjct: 686 tatgtattgaaaattcgagcaatccgaacctcaa 719
>gb|DR682085.1|DR682085 EST1072160 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA651 3' end, mRNA sequence
Length = 797
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 374 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 315
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 314 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 255
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 254 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 195
Query: 770 tatgtattgaagatacgtgcgatcctaacctcaa 803
||||||||||| || || || |||| ||||||||
Sbjct: 194 tatgtattgaaaattcgagcaatccgaacctcaa 161
>gb|AW758946.1|AW758946 NXNV_095_F06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_095_F06 5' similar to Arabidopsis thaliana
sequence At2g47650 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 330
Score = 81.8 bits (41), Expect = 7e-014
Identities = 137/169 (81%)
Strand = Plus / Minus
Query: 635 tcaaccagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtc 694
||||||||||| ||||| | |||||||||| || || || ||||| ||||| || |||
Sbjct: 187 tcaaccagatcggaaacgaactggaaactccgtgtctgtttcccatctccatagactgtc 128
Query: 695 aagggctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|| |||||||| | || |||||||||||||| ||||| ||||| || ||||| |||| |
Sbjct: 127 aaaggctccttgcgcaaagcctgagcaacaaaattacttacaacccgaccatcatcaagg 68
Query: 755 cacatgcgagggccatatgtattgaagatacgtgcgatcctaacctcaa 803
||||| || || || ||||||||||| || || || |||| ||||||||
Sbjct: 67 cacattcgcggaccgtatgtattgaaaattcgagcaatccgaacctcaa 19
>gb|BQ654839.1|BQ654839 NXRV086_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV086_D03 5' similar to Arabidopsis thaliana
sequence At3g62830 dTDP-glucose 4-6-dehydratase homolog
D18 see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 694
Score = 73.8 bits (37), Expect = 2e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 626 atcagaccctcaaccagatcagaaacatattggaaactcctggtttgctttccatcacca 685
||||| || ||||||| |||||||||||| || || |||| ||||| || || ||||||
Sbjct: 113 atcagtccatcaaccaaatcagaaacatactgaaagctccgtgtttgtttaccgtcacca 54
Query: 686 taaaccgtcaagggctccttcctcagtgcctgagcaacaaagttactgacaac 738
||||| ||||| || || || | ||||||||||||||||||||| || |||||
Sbjct: 53 taaactgtcaaaggttctttgcgcagtgcctgagcaacaaagttgctaacaac 1
>gb|DR056998.1|DR056998 RTNIT1_1_H09.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_1_H09_A029 5', mRNA sequence
Length = 786
Score = 71.9 bits (36), Expect = 7e-011
Identities = 150/188 (79%)
Strand = Plus / Plus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 544 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 603
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 604 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 663
Query: 710 agtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacatgcgagggcca 769
| |||||||||||||| ||||| ||||| || ||||| |||| |||||| || || ||
Sbjct: 664 aaagcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccg 723
Query: 770 tatgtatt 777
||||||||
Sbjct: 724 tatgtatt 731
>gb|CD025271.1|CD025271 NXSI_035_G08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_G08 5' similar to Arabidopsis thaliana
sequence At3g62830 dTDP-glucose 4-6-dehydratase homolog
D18 see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 180
Score = 67.9 bits (34), Expect = 1e-009
Identities = 114/143 (79%)
Strand = Plus / Minus
Query: 806 ttggcaccacggtggtaatccatggtcaacgtttcagctgtacgcttgccctcatcgtaa 865
||||| || ||||| || ||||| ||||| || ||||| || ||||||||||| |||
Sbjct: 146 ttggccccccggtgatagtccatcgtcaaagtctcagcnnnncgtttgccctcatcataa 87
Query: 866 cagctcctgacaccgatgggattgacattgccccagtaagtctccacctgcgggtgctgg 925
||| | || ||||| || ||||||||||| ||||| || |||||| ||| || || ||
Sbjct: 86 cagnttctaacacctataggattgacatttccccaatatgtctccgtctgtggatgnngg 27
Query: 926 agaggatcaccatagacctcact 948
|||||||| ||||| ||||||||
Sbjct: 26 agaggatccccatatacctcact 4
>gb|CD025786.1|CD025786 NXSI_081_C08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_081_C08 5' similar to Arabidopsis thaliana
sequence At3g62830 dTDP-glucose 4-6-dehydratase homolog
D18 see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 180
Score = 67.9 bits (34), Expect = 1e-009
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 640 cagatcagaaacatattggaaactcctggtttgctttccatcaccataaaccgtcaaggg 699
|||||| ||||| | |||||||||| || || || ||||| ||||| || ||||| ||
Sbjct: 175 cagatcggaaacgaantggaaactccgtgtctgtttcccatctccatagactgtcaaagg 116
Query: 700 ctccttcctcagtgcctgagcaacaaagttactgacaacacggccatcgtcaatgcacat 759
|||||| | || | |||||||||||| ||||| ||||| || ||||| |||| ||||||
Sbjct: 115 ctccttgcgcaaagnctgagcaacaaaattacttacaacccgaccatcatcaaggcacat 56
Query: 760 gcgagggccatatgtattgaagatacgtgcgatcctaacctcaa 803
|| || || ||||||||||| || || || |||| ||||||||
Sbjct: 55 tcgcggaccgtatgtattgaaaattcgagcaatccgaacctcaa 12
>gb|BX255109.1|BX255109 BX255109 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP111A06 similar to DTDP GLUCOSE 4,6
DEHYDRATASE, mRNA sequence
Length = 473
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 253 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 212
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 119 acgcttcccctcatcataacagcttcttacaccaattgggttgacattgccccagta 63
>gb|BX253417.1|BX253417 BX253417 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083C06a, mRNA sequence
Length = 317
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 220 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 179
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| |||||||| | ||||| || || |||||||||||||||||
Sbjct: 86 acgcttcccctcatcataacagctttttacaccaattgggttgacattgccccagta 30
>gb|BE644028.1|BE644028 NXCI_053_G03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_053_G03 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 460
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 121 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 80
>gb|BF186163.1|BF186163 NXCI_133_G06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_133_G06 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 121 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 80
>gb|BF610263.1|BF610263 NXSI_057_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_057_B05 5' similar to Arabidopsis thaliana
sequence At3g46440 dTDP-glucose 4-6-dehydratases-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 338
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 100 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 59
>gb|BX676890.1|BX676890 BX676890 RN Pinus pinaster cDNA clone RN13E08, mRNA sequence
Length = 520
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 497 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 456
>gb|CO162913.1|CO162913 FLD1_38_G02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_G02_A029 3', mRNA sequence
Length = 870
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 319 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 278
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 185 acgctttccctcatcataacagcttcttacaccaattgggttgacattgccccagta 129
>gb|CO166920.1|CO166920 FLD1_65_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_65_A12_A029 5', mRNA sequence
Length = 794
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 457 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 416
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 323 acgcttcccctcatcataacagcttcttacaccaattgggttgacattgccccagta 267
>gb|CO169434.1|CO169434 NDL1_7_B11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_B11_A029 3', mRNA sequence
Length = 729
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 197 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 156
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 63 acgcttcccctcatcataacagcttcttacaccaattgggttgacattgccccagta 7
>gb|CO169507.1|CO169507 NDL1_7_B11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_B11_A029 5', mRNA sequence
Length = 801
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 702 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 661
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 568 acgcttcccctcatcataacagcttcttacaccaattgggttgacattgccccagta 512
>gb|CV033876.1|CV033876 RTNACL1_37_D08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_37_D08_A029 3', mRNA sequence
Length = 855
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 161 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 120
>gb|CX650237.1|CX650237 COLD1_44_H04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_H04_A029 3', mRNA sequence
Length = 791
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 233 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 192
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| ||||| || || ||||| || || |||||||||||||||||
Sbjct: 99 acgcttcccctcatcataacaacttcttacaccaattgggttgacattgccccagta 43
>gb|DR055465.1|DR055465 RTCA1_23_G10.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_23_G10_A029 5', mRNA sequence
Length = 637
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 713 gcctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 540 gcctgagcaataaaattgctgacaacacggccatcgtcaatg 581
>gb|BX254458.1|BX254458 BX254458 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098G10 similar to DTDP GLUCOSE 4,6
DEHYDRATASE, mRNA sequence
Length = 695
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 635 acgcttcccctcatcataacagcttcttacaccaattgggttgacattgccccagta 579
>gb|BG319377.1|BG319377 NXPV_027_B04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_027_B04 5' similar to Arabidopsis
thaliana sequence At3g62830 dTDP-glucose 4-6-dehydratase
homolog D18 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 329
Score = 58.0 bits (29), Expect = 1e-006
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 821 taatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccg 880
|||||||| |||| ||||| ||||| | ||| |||||||| || || || | ||| |||
Sbjct: 228 taatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcggactccg 169
Query: 881 atgggattgacattgccccagtaag 905
|||||||| ||||||||||||||||
Sbjct: 168 atgggattaacattgccccagtaag 144
>gb|CD024484.1|CD024484 NXRV_043_D06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_043_D06 5' similar to Arabidopsis thaliana
sequence At3g62830 dTDP-glucose 4-6-dehydratase homolog
D18 see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 142
Score = 58.0 bits (29), Expect = 1e-006
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 821 taatccatggtcaacgtttcagctgtacgcttgccctcatcgtaacagctcctgacaccg 880
|||||||| |||| ||||| ||||| | ||| |||||||| || || || | ||| |||
Sbjct: 122 taatccatagtcagagtttcggctgttctcttaccctcatcatagcaactgcggactccg 63
Query: 881 atgggattgacattgccccagtaag 905
|||||||| ||||||||||||||||
Sbjct: 62 atgggattaacattgccccagtaag 38
>gb|BF518118.1|BF518118 NXSI_035_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_C02 5' similar to Arabidopsis thaliana
sequence At3g46440 dTDP-glucose 4-6-dehydratases-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 338
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 715 ctgagcaacaaagttactgacaacacggccatcgtcaatg 754
|||||||| ||| || ||||||||||||||||||||||||
Sbjct: 98 ctgagcaataaaattgctgacaacacggccatcgtcaatg 59
>gb|CO168770.1|CO168770 NDL1_2_A02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_A02_A029 5', mRNA sequence
Length = 690
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| ||||| || || ||||| || || |||||||||||||||||
Sbjct: 581 acgcttcccctcatcataacaacttcttacaccaattgggttgacattgccccagta 525
>gb|CV033955.1|CV033955 RTNACL1_37_D08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_37_D08_A029 5', mRNA sequence
Length = 801
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 847 acgcttgccctcatcgtaacagctcctgacaccgatgggattgacattgccccagta 903
|||||| |||||||| ||||| || || ||||| || || |||||||||||||||||
Sbjct: 748 acgcttcccctcatcataacaacttcttacaccaattgggttgacattgccccagta 692
>gb|DR079740.1|DR079740 RTFEPL1_17_F12.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_17_F12_A029 3', mRNA sequence
Length = 784
Score = 50.1 bits (25), Expect = 3e-004
Identities = 109/137 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 139 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 80
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctccttcctc 709
|| | |||||||||| || || || ||||| ||||| || ||||| |||||||| | |
Sbjct: 79 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctccttgcgc 20
Query: 710 agtgcctgagcaacaaa 726
| ||||||||||||||
Sbjct: 19 aaagcctgagcaacaaa 3
>gb|BI397899.1|BI397899 NXPV_110_G05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_110_G05 5' similar to Arabidopsis
thaliana sequence At3g62830 dTDP-glucose 4-6-dehydratase
homolog D18 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 250
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 878 ccgatgggattgacattgccccagtaag 905
||||||||||| ||||||||||||||||
Sbjct: 171 ccgatgggattaacattgccccagtaag 144
>gb|BM492831.1|BM492831 NXRV_031_E12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_031_E12 5' similar to Arabidopsis thaliana
sequence At2g47650 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 303
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 878 ccgatgggattgacattgccccagtaag 905
||||||||||| ||||||||||||||||
Sbjct: 228 ccgatgggattaacattgccccagtaag 201
>gb|CD024512.1|CD024512 NXRV_044_A01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_044_A01 5' similar to Arabidopsis thaliana
sequence At3g62830 dTDP-glucose 4-6-dehydratase homolog
D18 see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 177
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 878 ccgatgggattgacattgccccagtaag 905
||||||||||| ||||||||||||||||
Sbjct: 126 ccgatgggattaacattgccccagtaag 99
>gb|AW758792.1|AW758792 NXNV_089_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_089_G04 5' similar to Arabidopsis thaliana
sequence At2g47650 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 306
Score = 40.1 bits (20), Expect = 0.25
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 119 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 60
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctcctt 705
|| | |||||||||| || || || ||||| ||||| || ||||| ||||||||
Sbjct: 59 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctcctt 4
>gb|AW888189.1|AW888189 NXNV_105_F12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_105_F12 5' similar to Arabidopsis thaliana
sequence At3g62830 dTDP-glucose 4-6-dehydratase homolog
D18 see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 480
Score = 40.1 bits (20), Expect = 0.25
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 135 ttgaatggaccaacatgttcgccatccataagtcgcataaggccttcaaccagatcggaa 76
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctcctt 705
|| | |||||||||| || || || ||||| ||||| || ||||| ||||||||
Sbjct: 75 acgaactggaaactccgtgtctgtttcccatctccatagactgtcaaaggctcctt 20
>gb|DR118566.1|DR118566 RTMG1_17_G05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_G05_A029 5', mRNA sequence
Length = 479
Score = 40.1 bits (20), Expect = 0.25
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 590 ttgaatggccccacatgctcgccttccatcagcttcatcagaccctcaaccagatcagaa 649
|||||||| || ||||| ||||| ||||| || ||| || || ||||||||||| |||
Sbjct: 456 ttgaatggaccaacatgttcgccctccataagtcgcataaggccttcaaccagatcggaa 397
Query: 650 acatattggaaactcctggtttgctttccatcaccataaaccgtcaagggctcctt 705
|| | |||||||||| || || || ||||| ||||| || ||||| ||||||||
Sbjct: 396 acgaactggaaactccgagtctgtttcccatctccatagactgtcaaaggctcctt 341
>gb|DR072662.1|DR072662 RTDK1_27_F10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_27_F10_A029 5', mRNA sequence
Length = 331
Score = 38.2 bits (19), Expect = 1.00
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 883 gggattgacattgccccagtaag 905
|||||| ||||||||||||||||
Sbjct: 331 gggattaacattgccccagtaag 309
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,465
Number of Sequences: 355925
Number of extensions: 157465
Number of successful extensions: 44350
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44188
Number of HSP's gapped (non-prelim): 156
length of query: 1475
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1456
effective length of database: 210,514,662
effective search space: 306509347872
effective search space used: 306509347872
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)