BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.2
(1186 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF470865.1|CF470865 RTDS1_15_F04.b1_A015 Drought-stresse... 46 0.003
gb|CF470916.1|CF470916 RTDS1_15_F04.g1_A015 Drought-stresse... 46 0.003
gb|CF471728.1|CF471728 RTDS1_6_A03.b1_A015 Drought-stressed... 46 0.003
gb|DR024768.1|DR024768 STRS1_67_H04.b1_A034 Shoot tip pitch... 46 0.003
gb|DR024903.1|DR024903 STRS1_68_G02.b1_A034 Shoot tip pitch... 46 0.003
gb|DR024985.1|DR024985 STRS1_68_G02.g1_A034 Shoot tip pitch... 46 0.003
gb|DR094225.1|DR094225 STRR1_13_F04.b1_A033 Stem Response R... 46 0.003
gb|CF394731.1|CF394731 RTDS2_7_D11.b1_A021 Drought-stressed... 42 0.051
gb|CF394766.1|CF394766 RTDS2_7_D11.g1_A021 Drought-stressed... 42 0.051
gb|CF395858.1|CF395858 RTDS2_17_G08.g1_A021 Drought-stresse... 42 0.051
gb|CF397727.1|CF397727 RTDS3_1_F07.b2_A022 Drought-stressed... 42 0.051
gb|CF397769.1|CF397769 RTDS3_1_F07.g1_A022 Drought-stressed... 42 0.051
gb|CF471723.1|CF471723 RTDS1_6_H09.b1_A015 Drought-stressed... 42 0.051
gb|CF471738.1|CF471738 RTDS1_6_H09.g1_A015 Drought-stressed... 42 0.051
gb|CF663803.1|CF663803 RTCNT1_5_E11.b1_A029 Root control Pi... 42 0.051
gb|CF663873.1|CF663873 RTCNT1_5_E11.g1_A029 Root control Pi... 42 0.051
gb|CF669102.1|CF669102 RTCNT1_40_D11.g1_A029 Root control P... 42 0.051
gb|CR393567.1|CR393567 CR393567 RN Pinus pinaster cDNA clon... 42 0.051
gb|CO167103.1|CO167103 FLD1_66_G09.g1_A029 Root flooded Pin... 42 0.051
gb|CO197765.1|CO197765 GEO1_9_A02.b1_A029 Root gravitropism... 42 0.051
gb|CO367788.1|CO367788 RTK1_36_D07.g1_A029 Roots minus pota... 42 0.051
gb|CV034844.1|CV034844 RTNACL1_12_B05.b1_A029 Roots plus ad... 42 0.051
gb|CV034924.1|CV034924 RTNACL1_12_B05.g1_A029 Roots plus ad... 42 0.051
gb|CX653114.1|CX653114 COLD1_63_B04.g1_A029 Root cold Pinus... 42 0.051
gb|DN462126.1|DN462126 EST957925 Sequencing ESTs from loblo... 42 0.051
gb|DR015706.1|DR015706 STRS1_5_D08.b1_A034 Shoot tip pitch ... 42 0.051
gb|DR017806.1|DR017806 STRS1_18_D02.g1_A034 Shoot tip pitch... 42 0.051
gb|DR017924.1|DR017924 STRS1_19_H02.b1_A034 Shoot tip pitch... 42 0.051
gb|DR018012.1|DR018012 STRS1_20_A02.b1_A034 Shoot tip pitch... 42 0.051
gb|DR019629.1|DR019629 STRS1_31_G08.b1_A034 Shoot tip pitch... 42 0.051
gb|DR020097.1|DR020097 STRS1_34_D02.g1_A034 Shoot tip pitch... 42 0.051
gb|DR023186.1|DR023186 STRS1_56_B08.b1_A034 Shoot tip pitch... 42 0.051
gb|DR024473.1|DR024473 STRS1_65_E07.b1_A034 Shoot tip pitch... 42 0.051
gb|DR025521.1|DR025521 STRS1_72_D04.b1_A034 Shoot tip pitch... 42 0.051
gb|DR025600.1|DR025600 STRS1_72_D04.g1_A034 Shoot tip pitch... 42 0.051
gb|DR051603.1|DR051603 RTBOR1_31_E01.b1_A029 Roots plus add... 42 0.051
gb|DR079317.1|DR079317 RTFEPL1_10_B07.g1_A029 Roots plus ad... 42 0.051
gb|DR093118.1|DR093118 STRR1_6_D06.b1_A033 Stem Response Re... 42 0.051
gb|DR093189.1|DR093189 STRR1_6_D06.g1_A033 Stem Response Re... 42 0.051
gb|DR094231.1|DR094231 STRR1_13_F11.b1_A033 Stem Response R... 42 0.051
gb|DR094289.1|DR094289 STRR1_13_D07.g1_A033 Stem Response R... 42 0.051
gb|DR094599.1|DR094599 STRR1_15_C09.g1_A033 Stem Response R... 42 0.051
gb|DR094685.1|DR094685 STRR1_16_D03.b1_A033 Stem Response R... 42 0.051
gb|DR094950.1|DR094950 STRR1_17_G05.g1_A033 Stem Response R... 42 0.051
gb|DR097063.1|DR097063 STRR1_32_F04.b1_A033 Stem Response R... 42 0.051
gb|DR097134.1|DR097134 STRR1_32_F04.g1_A033 Stem Response R... 42 0.051
gb|DR098192.1|DR098192 STRR1_39_E08.g1_A033 Stem Response R... 42 0.051
gb|DR101305.1|DR101305 STRR1_72_A07.b1_A033 Stem Response R... 42 0.051
gb|DR102505.1|DR102505 STRR1_81_D01.g1_A033 Stem Response R... 42 0.051
gb|DR164407.1|DR164407 RTFE1_48_F02.g1_A029 Roots minus iro... 42 0.051
gb|DR384843.1|DR384843 RTHG1_5_A08.b1_A029 Roots plus added... 42 0.051
gb|DR385774.1|DR385774 RTHG1_10_F10.g1_A029 Roots plus adde... 42 0.051
gb|DR387500.1|DR387500 RTHG1_22_E09.b1_A029 Roots plus adde... 42 0.051
gb|AY500844.1| Pinus monticola class IV chitinase Ab (Ch4A)... 42 0.051
gb|AW042923.1|AW042923 ST27B03 Pine TriplEx shoot tip libra... 40 0.20
gb|AW056799.1|AW056799 ST56C02 Pine TriplEx shoot tip libra... 40 0.20
gb|AW981524.1|AW981524 PC13F02 Pine TriplEx pollen cone lib... 40 0.20
gb|CF387027.1|CF387027 RTDR1_10_D06.b1_A015 Loblolly pine r... 40 0.20
gb|CF387052.1|CF387052 RTDR1_10_D06.g1_A015 Loblolly pine r... 40 0.20
gb|CF393325.1|CF393325 RTDR3_20_E04.g1_A022 Loblolly pine r... 40 0.20
gb|CF400366.1|CF400366 RTWW1_4_C11.g1_A015 Well-watered lob... 40 0.20
gb|CF479676.1|CF479676 RTWW3_11_H03.g1_A022 Well-watered lo... 40 0.20
gb|CF669994.1|CF669994 RTCNT1_47_A05.g1_A029 Root control P... 40 0.20
gb|CF670619.1|CF670619 RTCNT1_51_A06.g1_A029 Root control P... 40 0.20
gb|CO173392.1|CO173392 NDL1_35_H02.g1_A029 Needles control ... 40 0.20
gb|CO175728.1|CO175728 NDL1_56_D01.g1_A029 Needles control ... 40 0.20
gb|CO362122.1|CO362122 RTK1_1_H10.b1_A029 Roots minus potas... 40 0.20
gb|CO368684.1|CO368684 RTK1_42_D11.b1_A029 Roots minus pota... 40 0.20
gb|CX651133.1|CX651133 COLD1_50_H02.b1_A029 Root cold Pinus... 40 0.20
gb|CX651207.1|CX651207 COLD1_50_H02.g1_A029 Root cold Pinus... 40 0.20
gb|DR017295.1|DR017295 STRS1_15_H02.b1_A034 Shoot tip pitch... 40 0.20
gb|DR017371.1|DR017371 STRS1_15_H02.g1_A034 Shoot tip pitch... 40 0.20
gb|DR050395.1|DR050395 RTBOR1_23_E08.b1_A029 Roots plus add... 40 0.20
gb|DR070569.1|DR070569 RTDK1_14_D12.b1_A029 Roots, dark Pin... 40 0.20
gb|DR101168.1|DR101168 STRR1_71_B09.b1_A033 Stem Response R... 40 0.20
gb|AY705804.1| Pinus halepensis clone 27r chitinase-like mR... 40 0.20
>gb|CF470865.1|CF470865 RTDS1_15_F04.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_F04_A015 3', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaa 734
|||||||| ||||| ||||||||||||||||
Sbjct: 93 cgttcaagacggcggtctggttctggatgaa 123
>gb|CF470916.1|CF470916 RTDS1_15_F04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_F04_A015 5', mRNA sequence
Length = 749
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaa 734
|||||||| ||||| ||||||||||||||||
Sbjct: 410 cgttcaagacggcggtctggttctggatgaa 440
>gb|CF471728.1|CF471728 RTDS1_6_A03.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_A03_A015 3', mRNA sequence
Length = 526
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaa 734
|||||||| ||||| ||||||||||||||||
Sbjct: 165 cgttcaagacggcggtctggttctggatgaa 195
>gb|DR024768.1|DR024768 STRS1_67_H04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_H04_A034 3', mRNA sequence
Length = 703
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaa 734
||||||||||||| ||||||||||||||||
Sbjct: 340 cgttcaaggcggctgtctggttctggatgaa 370
>gb|DR024903.1|DR024903 STRS1_68_G02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_68_G02_A034 3', mRNA sequence
Length = 752
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaa 734
|||||||| ||||| ||||||||||||||||
Sbjct: 440 cgttcaagacggcggtctggttctggatgaa 470
>gb|DR024985.1|DR024985 STRS1_68_G02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_68_G02_A034 5', mRNA sequence
Length = 822
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaa 734
|||||||| ||||| ||||||||||||||||
Sbjct: 598 cgttcaagacggcggtctggttctggatgaa 628
>gb|DR094225.1|DR094225 STRR1_13_F04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_F04_A033 3', mRNA sequence
Length = 249
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatgaa 734
|||||||| |||| |||||||||||||||||
Sbjct: 42 cgttcaagacggctctctggttctggatgaa 72
>gb|CF394731.1|CF394731 RTDS2_7_D11.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_D11_A021 3', mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 333 cgttcaagacggcggtctggttctggatg 361
>gb|CF394766.1|CF394766 RTDS2_7_D11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_D11_A021 5', mRNA sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 633 cgttcaagacggcggtctggttctggatg 661
>gb|CF395858.1|CF395858 RTDS2_17_G08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_17_G08_A021 5', mRNA sequence
Length = 749
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 405 cgttcaagacggcggtctggttctggatg 433
>gb|CF397727.1|CF397727 RTDS3_1_F07.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_F07_A022 3', mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 229 cgttcaagacggcggtctggttctggatg 257
>gb|CF397769.1|CF397769 RTDS3_1_F07.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_F07_A022 5', mRNA sequence
Length = 792
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 633 cgttcaagacggcggtctggttctggatg 661
>gb|CF471723.1|CF471723 RTDS1_6_H09.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_H09_A015 3', mRNA sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 365 cgttcaagacggcggtctggttctggatg 393
>gb|CF471738.1|CF471738 RTDS1_6_H09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_H09_A015 5', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 634 cgttcaagacggcggtctggttctggatg 662
>gb|CF663803.1|CF663803 RTCNT1_5_E11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_E11_A029 3', mRNA sequence
Length = 740
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 110 cgttcaagacggcggtctggttctggatg 82
>gb|CF663873.1|CF663873 RTCNT1_5_E11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_E11_A029 5', mRNA sequence
Length = 449
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 295 cgttcaagacggcggtctggttctggatg 267
>gb|CF669102.1|CF669102 RTCNT1_40_D11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_40_D11_A029 5', mRNA sequence
Length = 843
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 624 cgttcaagacggcggtctggttctggatg 652
>gb|CR393567.1|CR393567 CR393567 RN Pinus pinaster cDNA clone RN61H01, mRNA sequence
Length = 597
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 391 cgttcaagacggcggtctggttctggatg 419
>gb|CO167103.1|CO167103 FLD1_66_G09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_66_G09_A029 5', mRNA sequence
Length = 252
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 125 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 181
>gb|CO197765.1|CO197765 GEO1_9_A02.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_9_A02_A029 3', mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 333 cgttcaagacggcggtctggttctggatg 361
>gb|CO367788.1|CO367788 RTK1_36_D07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_D07_A029 5', mRNA sequence
Length = 850
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 283 cgttcaagacggcggtctggttctggatg 255
>gb|CV034844.1|CV034844 RTNACL1_12_B05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_12_B05_A029 3', mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 154 cgttcaagacggcggtctggttctggatg 126
>gb|CV034924.1|CV034924 RTNACL1_12_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_12_B05_A029 5', mRNA sequence
Length = 730
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 299 cgttcaagacggcggtctggttctggatg 271
>gb|CX653114.1|CX653114 COLD1_63_B04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_B04_A029 5', mRNA sequence
Length = 856
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 625 cgttcaagacggcggtctggttctggatg 653
>gb|DN462126.1|DN462126 EST957925 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIII63 5' end, mRNA sequence
Length = 771
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 615 cgttcaagacggcggtctggttctggatg 643
>gb|DR015706.1|DR015706 STRS1_5_D08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_D08_A034 3', mRNA sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 234 cgttcaagacggcggtctggttctggatg 262
>gb|DR017806.1|DR017806 STRS1_18_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_D02_A034 5', mRNA sequence
Length = 637
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 97 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 153
>gb|DR017924.1|DR017924 STRS1_19_H02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_19_H02_A034 3', mRNA sequence
Length = 888
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 758 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 702
>gb|DR018012.1|DR018012 STRS1_20_A02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_A02_A034 3', mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 464 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 408
>gb|DR019629.1|DR019629 STRS1_31_G08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_G08_A034 3', mRNA sequence
Length = 910
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 756 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 700
>gb|DR020097.1|DR020097 STRS1_34_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_D02_A034 5', mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 10 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 66
>gb|DR023186.1|DR023186 STRS1_56_B08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_B08_A034 3', mRNA sequence
Length = 772
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 620 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 564
>gb|DR024473.1|DR024473 STRS1_65_E07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_65_E07_A034 3', mRNA sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 598 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 542
>gb|DR025521.1|DR025521 STRS1_72_D04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_D04_A034 3', mRNA sequence
Length = 800
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 278 cgttcaagacggcggtctggttctggatg 250
>gb|DR025600.1|DR025600 STRS1_72_D04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_D04_A034 5', mRNA sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 280 cgttcaagacggcggtctggttctggatg 252
>gb|DR051603.1|DR051603 RTBOR1_31_E01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_31_E01_A029 3', mRNA sequence
Length = 449
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 255 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 199
>gb|DR079317.1|DR079317 RTFEPL1_10_B07.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_10_B07_A029 5', mRNA sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 245 cgttcaagacggcggtctggttctggatg 273
>gb|DR093118.1|DR093118 STRR1_6_D06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_6_D06_A033 3', mRNA sequence
Length = 925
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 293 cgttcaagacggcggtctggttctggatg 265
>gb|DR093189.1|DR093189 STRR1_6_D06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_6_D06_A033 5', mRNA sequence
Length = 898
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 331 cgttcaagacggcggtctggttctggatg 303
>gb|DR094231.1|DR094231 STRR1_13_F11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_F11_A033 3', mRNA sequence
Length = 853
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 701 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 645
>gb|DR094289.1|DR094289 STRR1_13_D07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_D07_A033 5', mRNA sequence
Length = 869
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 121 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 177
>gb|DR094599.1|DR094599 STRR1_15_C09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_15_C09_A033 5', mRNA sequence
Length = 766
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 137 tgcagcaagtatggatactgcgggacgacctccgactactgcggcgatggctgccag 193
>gb|DR094685.1|DR094685 STRR1_16_D03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_16_D03_A033 3', mRNA sequence
Length = 900
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 751 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 695
>gb|DR094950.1|DR094950 STRR1_17_G05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_17_G05_A033 5', mRNA sequence
Length = 873
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 28 tgcagcaagtatggatactgcgggacgacctccgactactgcggcgatggctgccag 84
>gb|DR097063.1|DR097063 STRR1_32_F04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_F04_A033 3', mRNA sequence
Length = 757
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 431 cgttcaagacggcggtctggttctggatg 459
>gb|DR097134.1|DR097134 STRR1_32_F04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_F04_A033 5', mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 387 cgttcaagacggcggtctggttctggatg 415
>gb|DR098192.1|DR098192 STRR1_39_E08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_E08_A033 5', mRNA sequence
Length = 764
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 115 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 171
>gb|DR101305.1|DR101305 STRR1_72_A07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_72_A07_A033 3', mRNA sequence
Length = 831
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 474 cgttcaagacggcggtctggttctggatg 502
>gb|DR102505.1|DR102505 STRR1_81_D01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_81_D01_A033 5', mRNA sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 cgttcaaggcggcgctctggttctggatg 732
|||||||| ||||| ||||||||||||||
Sbjct: 350 cgttcaagacggcggtctggttctggatg 322
>gb|DR164407.1|DR164407 RTFE1_48_F02.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_F02_A029 5', mRNA sequence
Length = 836
Score = 42.1 bits (21), Expect = 0.051
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 186 tgcagcaagttcggctactgcggcacgaccgacgagtactgcggcgacgggtgccag 242
|||||||||| || |||||||| |||||| ||| ||||||||||| || ||||||
Sbjct: 832 tgcagcaagtatggatactgcgggacgacctccgattactgcggcgatggctgccag 776
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,885
Number of Sequences: 355925
Number of extensions: 91885
Number of successful extensions: 24310
Number of sequences better than 0.5: 76
Number of HSP's better than 0.5 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24114
Number of HSP's gapped (non-prelim): 196
length of query: 1186
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1167
effective length of database: 210,514,662
effective search space: 245670610554
effective search space used: 245670610554
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)