BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161072.2.3
         (885 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF277846.2|AF277846  Pinus taeda clone 51k4f microsatelli...    42   0.038
gb|CR394451.1|CR394451  CR394451 RN Pinus pinaster cDNA clon...    40   0.15 

>gb|AF277846.2|AF277846 Pinus taeda clone 51k4f microsatellite PtTX3002 sequence
          Length = 386

 Score = 42.1 bits (21), Expect = 0.038
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 590 ggaggaggagaagaggaagaggagg 614
           ||||||||||||||||| |||||||
Sbjct: 291 ggaggaggagaagaggaggaggagg 315



>gb|CR394451.1|CR394451 CR394451 RN Pinus pinaster cDNA clone RN79D09, mRNA sequence
          Length = 491

 Score = 40.1 bits (20), Expect = 0.15
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 593 ggaggagaagaggaagaggaggaa 616
           |||| |||||||||||||||||||
Sbjct: 206 ggagaagaagaggaagaggaggaa 229



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 118,087
Number of Sequences: 355925
Number of extensions: 118087
Number of successful extensions: 39928
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39925
Number of HSP's gapped (non-prelim): 3
length of query: 885
length of database: 217,277,237
effective HSP length: 19
effective length of query: 866
effective length of database: 210,514,662
effective search space: 182305697292
effective search space used: 182305697292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)