BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805320.2.1
(955 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX649570.1|CX649570 COLD1_36_C11.b1_A029 Root cold Pinus... 78 7e-013
gb|AL750437.1|AL750437 AL750437 RN Pinus pinaster cDNA clon... 58 7e-007
gb|BX249764.1|BX249764 BX249764 Pinus pinaster differenciat... 58 7e-007
gb|BX250038.1|BX250038 BX250038 Pinus pinaster differenciat... 58 7e-007
gb|BX251631.1|BX251631 BX251631 Pinus pinaster differenciat... 58 7e-007
gb|BX252207.1|BX252207 BX252207 Pinus pinaster differenciat... 58 7e-007
gb|BX252362.1|BX252362 BX252362 Pinus pinaster differenciat... 58 7e-007
gb|BX252620.1|BX252620 BX252620 Pinus pinaster differenciat... 58 7e-007
gb|BX255564.1|BX255564 BX255564 Pinus pinaster differenciat... 58 7e-007
gb|BX677690.1|BX677690 BX677690 RN Pinus pinaster cDNA clon... 58 7e-007
gb|BX677861.1|BX677861 BX677861 RN Pinus pinaster cDNA clon... 58 7e-007
gb|BX678487.1|BX678487 BX678487 RS Pinus pinaster cDNA clon... 58 7e-007
gb|BX678569.1|BX678569 BX678569 RS Pinus pinaster cDNA clon... 58 7e-007
gb|BX679280.1|BX679280 BX679280 RS Pinus pinaster cDNA clon... 58 7e-007
gb|BX679292.1|BX679292 BX679292 RS Pinus pinaster cDNA clon... 58 7e-007
gb|CR392538.1|CR392538 CR392538 RN Pinus pinaster cDNA clon... 58 7e-007
gb|CR393008.1|CR393008 CR393008 RN Pinus pinaster cDNA clon... 58 7e-007
gb|AA739833.1|AA739833 598 PtIFG2 Pinus taeda cDNA clone 89... 54 1e-005
gb|BG275779.1|BG275779 NXSI_145_G08_F NXSI (Nsf Xylem Side ... 54 1e-005
gb|BQ291258.1|BQ291258 NXRV057_H10_F NXRV (Nsf Xylem Root w... 54 1e-005
gb|BQ699605.1|BQ699605 NXRV124_D10_F NXRV (Nsf Xylem Root w... 54 1e-005
gb|BQ702594.1|BQ702594 NXSI_130_D01_F NXSI (Nsf Xylem Side ... 54 1e-005
gb|CF388695.1|CF388695 RTDR2_15_B03.b1_A021 Loblolly pine r... 54 1e-005
gb|CF389363.1|CF389363 RTDR2_7_G04.b1_A021 Loblolly pine ro... 54 1e-005
gb|CF392956.1|CF392956 RTDR3_18_D01.b1_A022 Loblolly pine r... 54 1e-005
gb|CF393061.1|CF393061 RTDR3_18_D01.g1_A022 Loblolly pine r... 54 1e-005
gb|CF397710.1|CF397710 RTDS3_1_H02.b2_A022 Drought-stressed... 54 1e-005
gb|CF397820.1|CF397820 RTDS3_1_H02.g1_A022 Drought-stressed... 54 1e-005
gb|CF471266.1|CF471266 RTDS1_2_G09.g1_A015 Drought-stressed... 54 1e-005
gb|CF663480.1|CF663480 RTCNT1_3_C10.b1_A029 Root control Pi... 54 1e-005
gb|CF663551.1|CF663551 RTCNT1_3_C10.g1_A029 Root control Pi... 54 1e-005
gb|CF663649.1|CF663649 RTCNT1_4_F08.b1_A029 Root control Pi... 54 1e-005
gb|CF663727.1|CF663727 RTCNT1_4_F08.g1_A029 Root control Pi... 54 1e-005
gb|CF666903.1|CF666903 RTCNT1_26_H07.g1_A029 Root control P... 54 1e-005
gb|CF668629.1|CF668629 RTCNT1_37_E06.g1_A029 Root control P... 54 1e-005
gb|CF671730.1|CF671730 RTCNT1_58_H11.g1_A029 Root control P... 54 1e-005
gb|CO158809.1|CO158809 FLD1_9_H12.b1_A029 Root flooded Pinu... 54 1e-005
gb|CO158899.1|CO158899 FLD1_10_B04.b1_A029 Root flooded Pin... 54 1e-005
gb|CO158974.1|CO158974 FLD1_10_B04.g1_A029 Root flooded Pin... 54 1e-005
gb|CO162543.1|CO162543 FLD1_36_A08.b1_A029 Root flooded Pin... 54 1e-005
gb|CO162617.1|CO162617 FLD1_36_A08.g1_A029 Root flooded Pin... 54 1e-005
gb|CO163536.1|CO163536 FLD1_42_F05.b1_A029 Root flooded Pin... 54 1e-005
gb|CO163620.1|CO163620 FLD1_42_F05.g1_A029 Root flooded Pin... 54 1e-005
gb|CO164681.1|CO164681 FLD1_49_D02.g1_A029 Root flooded Pin... 54 1e-005
gb|CO165043.1|CO165043 FLD1_52_A11.b1_A029 Root flooded Pin... 54 1e-005
gb|CO165115.1|CO165115 FLD1_52_A11.g1_A029 Root flooded Pin... 54 1e-005
gb|CO165853.1|CO165853 FLD1_57_C04.g1_A029 Root flooded Pin... 54 1e-005
gb|CO175691.1|CO175691 NDL1_56_H05.b1_A029 Needles control ... 54 1e-005
gb|CO175771.1|CO175771 NDL1_56_H05.g1_A029 Needles control ... 54 1e-005
gb|CO176482.1|CO176482 NDL1_62_F08.b1_A029 Needles control ... 54 1e-005
gb|CO176486.1|CO176486 NDL1_62_G02.b1_A029 Needles control ... 54 1e-005
gb|CO176566.1|CO176566 NDL1_62_F08.g1_A029 Needles control ... 54 1e-005
gb|CO176571.1|CO176571 NDL1_62_G02.g1_A029 Needles control ... 54 1e-005
gb|CO197158.1|CO197158 GEO1_4_F11.b1_A029 Root gravitropism... 54 1e-005
gb|CO197231.1|CO197231 GEO1_4_F11.g1_A029 Root gravitropism... 54 1e-005
gb|CO200245.1|CO200245 GEO2_6_F10.b1_A032 Root gravitropism... 54 1e-005
gb|CO201527.1|CO201527 RTCNT2_6_H04.b1_A029 Root control 2 ... 54 1e-005
gb|CO201603.1|CO201603 RTCNT2_6_H04.g1_A029 Root control 2 ... 54 1e-005
gb|CO361393.1|CO361393 NDL2_4_C11.g1_A029 Needles control 2... 54 1e-005
gb|CO361663.1|CO361663 NDL2_6_F03.b1_A029 Needles control 2... 54 1e-005
gb|CO361741.1|CO361741 NDL2_6_F03.g1_A029 Needles control 2... 54 1e-005
gb|CO365082.1|CO365082 RTK1_23_C03.g1_A029 Roots minus pota... 54 1e-005
gb|CO366180.1|CO366180 RTK1_26_G12.b1_A029 Roots minus pota... 54 1e-005
gb|CO366269.1|CO366269 RTK1_26_G12.g1_A029 Roots minus pota... 54 1e-005
gb|CV035095.1|CV035095 RTNACL1_13_C11.g1_A029 Roots plus ad... 54 1e-005
gb|CX645911.1|CX645911 COLD1_6_B11.b1_A029 Root cold Pinus ... 54 1e-005
gb|CX648179.1|CX648179 COLD1_27_B06.b1_A029 Root cold Pinus... 54 1e-005
gb|CX648256.1|CX648256 COLD1_27_B06.g1_A029 Root cold Pinus... 54 1e-005
gb|CX648486.1|CX648486 COLD1_29_A09.b1_A029 Root cold Pinus... 54 1e-005
gb|CX648561.1|CX648561 COLD1_29_A09.g1_A029 Root cold Pinus... 54 1e-005
gb|CX650341.1|CX650341 COLD1_45_B10.b1_A029 Root cold Pinus... 54 1e-005
gb|CX650379.1|CX650379 COLD1_45_F11.b1_A029 Root cold Pinus... 54 1e-005
gb|CX650414.1|CX650414 COLD1_45_B10.g1_A029 Root cold Pinus... 54 1e-005
gb|CX650455.1|CX650455 COLD1_45_F11.g1_A029 Root cold Pinus... 54 1e-005
gb|CX650525.1|CX650525 COLD1_46_F11.b1_A029 Root cold Pinus... 54 1e-005
gb|CX650677.1|CX650677 COLD1_47_G11.b1_A029 Root cold Pinus... 54 1e-005
gb|CX651281.1|CX651281 COLD1_51_G12.b1_A029 Root cold Pinus... 54 1e-005
gb|CX651363.1|CX651363 COLD1_51_G12.g1_A029 Root cold Pinus... 54 1e-005
gb|CX714648.1|CX714648 RTPQ1_24_G10.b1_A032 Roots treated w... 54 1e-005
gb|DR010914.1|DR010914 HEAT1_2_C12.b1_A029 Root at 37 C for... 54 1e-005
gb|DR010988.1|DR010988 HEAT1_2_C12.g1_A029 Root at 37 C for... 54 1e-005
gb|DR013238.1|DR013238 HEAT1_18_C04.b1_A029 Root at 37 C fo... 54 1e-005
gb|DR013313.1|DR013313 HEAT1_18_C04.g1_A029 Root at 37 C fo... 54 1e-005
gb|DR014466.1|DR014466 HEAT1_49_E02.g1_A029 Root at 37 C fo... 54 1e-005
gb|DR014538.1|DR014538 HEAT1_50_C11.b1_A029 Root at 37 C fo... 54 1e-005
gb|DR014619.1|DR014619 HEAT1_50_C11.g1_A029 Root at 37 C fo... 54 1e-005
gb|DR017568.1|DR017568 STRS1_17_D03.b1_A034 Shoot tip pitch... 54 1e-005
gb|DR017647.1|DR017647 STRS1_17_D03.g1_A034 Shoot tip pitch... 54 1e-005
gb|DR020258.1|DR020258 STRS1_35_E05.g1_A034 Shoot tip pitch... 54 1e-005
gb|DR023353.1|DR023353 STRS1_57_B11.b1_A034 Shoot tip pitch... 54 1e-005
gb|DR023422.1|DR023422 STRS1_57_B11.g1_A034 Shoot tip pitch... 54 1e-005
gb|DR048787.1|DR048787 RTBOR1_11_F06.b1_A029 Roots plus add... 54 1e-005
gb|DR048865.1|DR048865 RTBOR1_11_F06.g1_A029 Roots plus add... 54 1e-005
gb|DR051572.1|DR051572 RTBOR1_31_A11.b1_A029 Roots plus add... 54 1e-005
gb|DR051647.1|DR051647 RTBOR1_31_A11.g1_A029 Roots plus add... 54 1e-005
gb|DR052397.1|DR052397 RTCA1_4_H06.b1_A029 Roots minus calc... 54 1e-005
gb|DR052481.1|DR052481 RTCA1_4_H06.g1_A029 Roots minus calc... 54 1e-005
gb|DR055514.1|DR055514 RTCA1_24_E02.b1_A029 Roots minus cal... 54 1e-005
gb|DR055594.1|DR055594 RTCA1_24_E02.g2_A029 Roots minus cal... 54 1e-005
gb|DR056283.1|DR056283 RTCA1_29_F05.b1_A029 Roots minus cal... 54 1e-005
gb|DR056358.1|DR056358 RTCA1_29_F05.g1_A029 Roots minus cal... 54 1e-005
gb|DR058551.1|DR058551 RTNIT1_12_B08.g1_A029 Roots minus ni... 54 1e-005
gb|DR069871.1|DR069871 RTDK1_10_A02.b1_A029 Roots, dark Pin... 54 1e-005
gb|DR069956.1|DR069956 RTDK1_10_A02.g1_A029 Roots, dark Pin... 54 1e-005
gb|DR071506.1|DR071506 RTDK1_20_G07.b1_A029 Roots, dark Pin... 54 1e-005
gb|DR078277.1|DR078277 RTFEPL1_3_C03.b1_A029 Roots plus add... 54 1e-005
gb|DR078417.1|DR078417 RTFEPL1_4_C03.b1_A029 Roots plus add... 54 1e-005
gb|DR079129.1|DR079129 RTFEPL1_9_F07.b1_A029 Roots plus add... 54 1e-005
gb|DR079205.1|DR079205 RTFEPL1_9_F07.g1_A029 Roots plus add... 54 1e-005
gb|DR080210.1|DR080210 RTFEPL1_21_D07.b1_A029 Roots plus ad... 54 1e-005
gb|DR088855.1|DR088855 RTAL1_5_C06.b1_A029 Roots plus added... 54 1e-005
gb|DR088936.1|DR088936 RTAL1_5_C06.g1_A029 Roots plus added... 54 1e-005
gb|DR098070.1|DR098070 STRR1_39_A01.b1_A033 Stem Response R... 54 1e-005
gb|DR098145.1|DR098145 STRR1_39_A01.g1_A033 Stem Response R... 54 1e-005
gb|DR101478.1|DR101478 STRR1_73_H08.b1_A033 Stem Response R... 54 1e-005
gb|DR118002.1|DR118002 RTMG1_10_C01.g1_A029 Roots minus mag... 54 1e-005
gb|DR160876.1|DR160876 RTFE1_8_C03.g1_A029 Roots minus iron... 54 1e-005
gb|DR162330.1|DR162330 RTFE1_17_E03.b1_A029 Roots minus iro... 54 1e-005
gb|DR162417.1|DR162417 RTFE1_17_E03.g1_A029 Roots minus iro... 54 1e-005
gb|DR168829.1|DR168829 RTPHOS1_28_D07.b1_A029 Roots minus p... 54 1e-005
gb|DR168908.1|DR168908 RTPHOS1_28_D07.g1_A029 Roots minus p... 54 1e-005
gb|DR169279.1|DR169279 RTPHOS1_31_G01.b1_A029 Roots minus p... 54 1e-005
gb|DR180934.1|DR180934 RTMNUT1_35_F08.g1_A029 Roots minus m... 54 1e-005
gb|DR180989.1|DR180989 RTMNUT1_36_C10.b1_A029 Roots minus m... 54 1e-005
gb|DR181069.1|DR181069 RTMNUT1_36_C10.g1_A029 Roots minus m... 54 1e-005
gb|DR384290.1|DR384290 RTHG1_1_G02.b1_A029 Roots plus added... 54 1e-005
gb|DR384371.1|DR384371 RTHG1_1_G02.g1_A029 Roots plus added... 54 1e-005
gb|DR384449.1|DR384449 RTHG1_2_G06.b1_A029 Roots plus added... 54 1e-005
gb|DR384531.1|DR384531 RTHG1_2_G06.g1_A029 Roots plus added... 54 1e-005
gb|DR384616.1|DR384616 RTHG1_3_A04.g1_A029 Roots plus added... 54 1e-005
gb|DR384992.1|DR384992 RTHG1_6_A06.b1_A029 Roots plus added... 54 1e-005
gb|DR385049.1|DR385049 RTHG1_6_G05.b1_A029 Roots plus added... 54 1e-005
gb|DR387977.1|DR387977 RTHG1_25_H12.b1_A029 Roots plus adde... 54 1e-005
gb|DR388063.1|DR388063 RTHG1_25_H12.g1_A029 Roots plus adde... 54 1e-005
gb|DR388592.1|DR388592 RTHG1_29_F05.b1_A029 Roots plus adde... 54 1e-005
gb|DR389027.1|DR389027 RTHG1_32_A07.b1_A029 Roots plus adde... 54 1e-005
gb|DR389066.1|DR389066 RTHG1_32_E10.b1_A029 Roots plus adde... 54 1e-005
gb|DR742552.1|DR742552 RTCU1_5_A07.b2_A029 Roots plus added... 54 1e-005
gb|DR742622.1|DR742622 RTCU1_5_A07.g2_A029 Roots plus added... 54 1e-005
gb|DR743621.1|DR743621 RTCU1_17_C08.b1_A029 Roots plus adde... 54 1e-005
gb|DR744794.1|DR744794 RTCU1_25_A12.b1_A029 Roots plus adde... 54 1e-005
gb|BX255795.1|BX255795 BX255795 Pinus pinaster differenciat... 52 4e-005
gb|CR393441.1|CR393441 CR393441 RN Pinus pinaster cDNA clon... 52 4e-005
gb|BM493051.1|BM493051 NXRV_037_D04_F NXRV (Nsf Xylem Root ... 48 7e-004
gb|AI919778.1|AI919778 1322 Pine Lambda Zap Xylem library P... 46 0.003
gb|AI919826.1|AI919826 1370 Pine Lambda Zap Xylem library P... 46 0.003
gb|AW289572.1|AW289572 NXNV002E07F Nsf Xylem Normal wood Ve... 46 0.003
gb|BQ702400.1|BQ702400 NXSI_128_C01_F NXSI (Nsf Xylem Side ... 46 0.003
gb|CD028144.1|CD028144 NXNV002E07 Nsf Xylem Normal wood Ver... 46 0.003
gb|CO169410.1|CO169410 NDL1_6_H01.g1_A029 Needles control P... 46 0.003
gb|CO366727.1|CO366727 RTK1_29_E05.g1_A029 Roots minus pota... 46 0.003
gb|CX649355.1|CX649355 COLD1_34_D12.g1_A029 Root cold Pinus... 46 0.003
gb|CX714165.1|CX714165 RTPQ1_18_D11.g1_A032 Roots treated w... 46 0.003
gb|DR053987.1|DR053987 RTCA1_14_C03.g1_A029 Roots minus cal... 46 0.003
gb|DR078349.1|DR078349 RTFEPL1_3_C03.g1_A029 Roots plus add... 46 0.003
gb|DR160628.1|DR160628 RTFE1_7_D07.b1_A029 Roots minus iron... 46 0.003
gb|DR160717.1|DR160717 RTFE1_7_D07.g1_A029 Roots minus iron... 46 0.003
gb|AW010150.1|AW010150 ST02F01 Pine TriplEx shoot tip libra... 44 0.010
gb|BF777346.1|BF777346 NXSI_068_E11_F NXSI (Nsf Xylem Side ... 44 0.010
gb|CF663840.1|CF663840 RTCNT1_5_A12.g1_A029 Root control Pi... 44 0.010
gb|DR388670.1|DR388670 RTHG1_29_F05.g1_A029 Roots plus adde... 44 0.010
>gb|CX649570.1|CX649570 COLD1_36_C11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_36_C11_A029 3', mRNA sequence
Length = 913
Score = 77.8 bits (39), Expect = 7e-013
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 346 ggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattcttgat 405
|||||||| |||||| | || |||| |||||||||||| ||||||||||| || ||||
Sbjct: 522 ggcccactcgttctcacgtcgaatctgctcttcctcctccggggtgaagtcgttggtgat 463
Query: 406 gttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgt 452
|||||||||||| || || || || || | |||||||||||||||||
Sbjct: 462 gttgaaggtctttcggatttcctcgggagacttgcccttgatcatgt 416
>gb|AL750437.1|AL750437 AL750437 RN Pinus pinaster cDNA clone RN02E06 similar to
KINETOCHORE, mRNA sequence
Length = 520
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 240 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 181
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 180 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 136
>gb|BX249764.1|BX249764 BX249764 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP027D08 similar to Cyclin A/CDK2 associated
protein p19, mRNA sequence
Length = 657
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 271 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 330
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 331 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 375
>gb|BX250038.1|BX250038 BX250038 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP031F11 similar to Cyclin A/CDK2 associated
protein p19, mRNA sequence
Length = 734
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 560 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 501
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 500 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 456
>gb|BX251631.1|BX251631 BX251631 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP053C08 similar to Cyclin A/CDK2 associated
protein p19, mRNA sequence
Length = 720
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 569 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 510
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 509 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 465
>gb|BX252207.1|BX252207 BX252207 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP061C09 similar to Cyclin A/CDK2 associated
protein p19, mRNA sequence
Length = 710
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 539 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 480
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 479 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 435
>gb|BX252362.1|BX252362 BX252362 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063D08 similar to Cyclin A/CDK2 associated
protein p19, mRNA sequence
Length = 726
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 569 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 510
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 509 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 465
>gb|BX252620.1|BX252620 BX252620 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP068A03 similar to Cyclin A/CDK2 associated
protein p19, mRNA sequence
Length = 385
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 261 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 202
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 201 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 157
>gb|BX255564.1|BX255564 BX255564 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007C02 similar to Cyclin A/CDK2 associated
protein p19, mRNA sequence
Length = 686
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 554 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 495
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 494 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 450
>gb|BX677690.1|BX677690 BX677690 RN Pinus pinaster cDNA clone RN43B12, mRNA sequence
Length = 515
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 312 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 253
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 252 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 208
>gb|BX677861.1|BX677861 BX677861 RN Pinus pinaster cDNA clone RN45F12, mRNA sequence
Length = 258
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 198 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 139
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 138 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 94
>gb|BX678487.1|BX678487 BX678487 RS Pinus pinaster cDNA clone RS09H02, mRNA sequence
Length = 619
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 559 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 500
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 499 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 455
>gb|BX678569.1|BX678569 BX678569 RS Pinus pinaster cDNA clone RS11C10, mRNA sequence
Length = 608
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 559 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 500
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 499 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 455
>gb|BX679280.1|BX679280 BX679280 RS Pinus pinaster cDNA clone RS22D08, mRNA sequence
Length = 552
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 230 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 171
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 170 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 126
>gb|BX679292.1|BX679292 BX679292 RS Pinus pinaster cDNA clone RS22E09, mRNA sequence
Length = 574
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 554 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 495
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 494 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 450
>gb|CR392538.1|CR392538 CR392538 RN Pinus pinaster cDNA clone RN33G12, mRNA sequence
Length = 504
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 312 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 253
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 252 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 208
>gb|CR393008.1|CR393008 CR393008 RN Pinus pinaster cDNA clone RN51D04, mRNA sequence
Length = 573
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 306 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 247
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgacaggtcag 474
||| || || || || ||||||||||| || |||||||| |||||
Sbjct: 246 tggcgttttcccttttatcatgtcagcgactgtctgacatgtcag 202
>gb|AA739833.1|AA739833 598 PtIFG2 Pinus taeda cDNA clone 8962M 3', mRNA sequence
Length = 677
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 325 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 266
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 265 tggcgttttcccttttatcatgtcggcgacagtctgaca 227
>gb|BG275779.1|BG275779 NXSI_145_G08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_145_G08 5' similar to Arabidopsis thaliana
sequence At1g75950 UIP1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 467
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 148 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 89
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 88 tggcgttttcccttttatcatgtcggcgacagtctgaca 50
>gb|BQ291258.1|BQ291258 NXRV057_H10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV057_H10 5' similar to Arabidopsis thaliana
sequence At5g42190 UIP2 (gb|AAC63110.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 660
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 569 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 510
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 509 tggcgttttcccttttatcatgtcggcgacagtctgaca 471
>gb|BQ699605.1|BQ699605 NXRV124_D10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV124_D10 5' similar to Arabidopsis thaliana
sequence At5g42190 UIP2 (gb|AAC63110.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 806
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 550 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 491
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 490 tggcgttttcccttttatcatgtcggcgacagtctgaca 452
>gb|BQ702594.1|BQ702594 NXSI_130_D01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_130_D01 5' similar to Arabidopsis thaliana
sequence At1g75950 UIP1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 265 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 206
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 205 tggcgttttcccttttatcatgtcggcgacagtctgaca 167
>gb|CF388695.1|CF388695 RTDR2_15_B03.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_15_B03_A021 3', mRNA
sequence
Length = 556
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 222 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 163
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 162 tggcgttttcccttttatcatgtcggcgacagtctgaca 124
>gb|CF389363.1|CF389363 RTDR2_7_G04.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_G04_A021 3', mRNA
sequence
Length = 617
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 318 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 259
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 258 tggcgttttcccttttatcatgtcggcgacagtctgaca 220
>gb|CF392956.1|CF392956 RTDR3_18_D01.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_D01_A022 3', mRNA
sequence
Length = 567
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 11 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 70
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 71 tggcgttttcccttttatcatgtcggcgacagtctgaca 109
>gb|CF393061.1|CF393061 RTDR3_18_D01.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_D01_A022 5', mRNA
sequence
Length = 658
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 371 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 430
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 431 tggcgttttcccttttatcatgtcggcgacagtctgaca 469
>gb|CF397710.1|CF397710 RTDS3_1_H02.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_H02_A022 3', mRNA sequence
Length = 685
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 386 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 327
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 326 tggcgttttcccttttatcatgtcggcgacagtctgaca 288
>gb|CF397820.1|CF397820 RTDS3_1_H02.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_H02_A022 5', mRNA sequence
Length = 684
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 497 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 438
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 437 tggcgttttcccttttatcatgtcggcgacagtctgaca 399
>gb|CF471266.1|CF471266 RTDS1_2_G09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_2_G09_A015 5', mRNA sequence
Length = 765
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 542 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 483
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 482 tggcgttttcccttttatcatgtcggcgacagtctgaca 444
>gb|CF663480.1|CF663480 RTCNT1_3_C10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_3_C10_A029 3', mRNA sequence
Length = 757
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 188 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 247
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 248 tggcgttttcccttttatcatgtcggcgacagtctgaca 286
>gb|CF663551.1|CF663551 RTCNT1_3_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_3_C10_A029 5', mRNA sequence
Length = 763
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 273 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 332
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 333 tggcgttttcccttttatcatgtcggcgacagtctgaca 371
>gb|CF663649.1|CF663649 RTCNT1_4_F08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_F08_A029 3', mRNA sequence
Length = 823
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 464 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 405
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 404 tggcgttttcccttttatcatgtcggcgacagtctgaca 366
>gb|CF663727.1|CF663727 RTCNT1_4_F08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_F08_A029 5', mRNA sequence
Length = 848
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 573 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 514
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 513 tggcgttttcccttttatcatgtcggcgacagtctgaca 475
>gb|CF666903.1|CF666903 RTCNT1_26_H07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_H07_A029 5', mRNA sequence
Length = 810
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 548 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 489
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 488 tggcgttttcccttttatcatgtcggcgacagtctgaca 450
>gb|CF668629.1|CF668629 RTCNT1_37_E06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_E06_A029 5', mRNA sequence
Length = 789
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 516 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 457
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 456 tggcgttttcccttttatcatgtcggcgacagtctgaca 418
>gb|CF671730.1|CF671730 RTCNT1_58_H11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_58_H11_A029 5', mRNA sequence
Length = 536
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 320 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 379
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 380 tggcgttttcccttttatcatgtcggcgacagtctgaca 418
>gb|CO158809.1|CO158809 FLD1_9_H12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_H12_A029 3', mRNA sequence
Length = 668
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 316 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 257
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 256 tggcgttttcccttttatcatgtcggcgacagtctgaca 218
>gb|CO158899.1|CO158899 FLD1_10_B04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_B04_A029 3', mRNA sequence
Length = 788
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 487 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 428
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 427 tggcgttttcccttttatcatgtcggcgacagtctgaca 389
>gb|CO158974.1|CO158974 FLD1_10_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_B04_A029 5', mRNA sequence
Length = 801
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 576 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 517
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 516 tggcgttttcccttttatcatgtcggcgacagtctgaca 478
>gb|CO162543.1|CO162543 FLD1_36_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_36_A08_A029 3', mRNA sequence
Length = 648
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 297 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 238
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 237 tggcgttttcccttttatcatgtcggcgacagtctgaca 199
>gb|CO162617.1|CO162617 FLD1_36_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_36_A08_A029 5', mRNA sequence
Length = 828
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 530 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 471
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 470 tggcgttttcccttttatcatgtcggcgacagtctgaca 432
>gb|CO163536.1|CO163536 FLD1_42_F05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_42_F05_A029 3', mRNA sequence
Length = 868
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 449 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 390
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 389 tggcgttttcccttttatcatgtcggcgacagtctgaca 351
>gb|CO163620.1|CO163620 FLD1_42_F05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_42_F05_A029 5', mRNA sequence
Length = 872
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 564 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 505
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 504 tggcgttttcccttttatcatgtcggcgacagtctgaca 466
>gb|CO164681.1|CO164681 FLD1_49_D02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_49_D02_A029 5', mRNA sequence
Length = 844
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 537 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 478
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 477 tggcgttttcccttttatcatgtcggcgacagtctgaca 439
>gb|CO165043.1|CO165043 FLD1_52_A11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_A11_A029 3', mRNA sequence
Length = 867
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 276 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 335
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 336 tggcgttttcccttttatcatgtcggcgacagtctgaca 374
>gb|CO165115.1|CO165115 FLD1_52_A11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_A11_A029 5', mRNA sequence
Length = 860
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 276 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 335
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 336 tggcgttttcccttttatcatgtcggcgacagtctgaca 374
>gb|CO165853.1|CO165853 FLD1_57_C04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_C04_A029 5', mRNA sequence
Length = 757
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 492 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 433
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 432 tggcgttttcccttttatcatgtcggcgacagtctgaca 394
>gb|CO175691.1|CO175691 NDL1_56_H05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_56_H05_A029 3', mRNA sequence
Length = 599
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 326 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 267
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 266 tggcgttttcccttttatcatgtcggcgacagtctgaca 228
>gb|CO175771.1|CO175771 NDL1_56_H05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_56_H05_A029 5', mRNA sequence
Length = 786
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 545 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 486
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 485 tggcgttttcccttttatcatgtcggcgacagtctgaca 447
>gb|CO176482.1|CO176482 NDL1_62_F08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_62_F08_A029 3', mRNA sequence
Length = 574
Score = 54.0 bits (27), Expect = 1e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 370 ctcctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttc 429
|||||| ||||| ||||| || || |||||||| |||||||| || || || || |||||
Sbjct: 286 ctcctcctcctcttcaggagtaaaatcattctttatgttgaaagttttacgtatttcttc 227
Query: 430 tggtgtcttgcccttgatcatgtcagcaacagtctgaca 468
||| || || || || |||||||| || |||||||||||
Sbjct: 226 tggcgttttcccttttatcatgtcggcgacagtctgaca 188
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,621
Number of Sequences: 355925
Number of extensions: 113621
Number of successful extensions: 33800
Number of sequences better than 0.5: 161
Number of HSP's better than 0.5 without gapping: 160
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33394
Number of HSP's gapped (non-prelim): 407
length of query: 955
length of database: 217,277,237
effective HSP length: 19
effective length of query: 936
effective length of database: 210,514,662
effective search space: 197041723632
effective search space used: 197041723632
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)