BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805016.2.1
(1645 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW064596.1|AW064596 ST33D09 Pine TriplEx shoot tip libra... 103 2e-020
gb|BE123609.1|BE123609 NXNV_146_C11_F Nsf Xylem Normal wood... 101 9e-020
gb|CF390139.1|CF390139 RTDR2_12_E04.g1_A021 Loblolly pine r... 101 9e-020
gb|CF473550.1|CF473550 RTWW2_3_H01.g1_A021 Well-watered lob... 101 9e-020
gb|CF669350.1|CF669350 RTCNT1_42_F05.g1_A029 Root control P... 101 9e-020
gb|CO368425.1|CO368425 RTK1_40_C07.g1_A029 Roots minus pota... 101 9e-020
gb|CV033295.1|CV033295 RTNACL1_33_D06.g1_A029 Roots plus ad... 101 9e-020
gb|CX651299.1|CX651299 COLD1_51_A08.g1_A029 Root cold Pinus... 101 9e-020
gb|DR060009.1|DR060009 RTNIT1_25_D07.b1_A029 Roots minus ni... 101 9e-020
gb|DR089543.1|DR089543 RTAL1_9_H03.b1_A029 Roots plus added... 101 9e-020
gb|DR163547.1|DR163547 RTFE1_43_C01.g1_A029 Roots minus iro... 101 9e-020
gb|DR182342.1|DR182342 RTMNUT1_44_A01.g1_A029 Roots minus m... 101 9e-020
gb|BI397729.1|BI397729 NXPV_104_F04_F NXPV (Nsf Xylem Plani... 96 6e-018
gb|BX249446.1|BX249446 BX249446 Pinus pinaster differenciat... 90 3e-016
gb|BX252596.1|BX252596 BX252596 Pinus pinaster differenciat... 88 1e-015
gb|BX252900.1|BX252900 BX252900 Pinus pinaster differenciat... 88 1e-015
gb|CF389500.1|CF389500 RTDR2_7_F04.g1_A021 Loblolly pine ro... 74 2e-011
gb|CF395787.1|CF395787 RTDS2_17_A05.g1_A021 Drought-stresse... 74 2e-011
gb|CF473569.1|CF473569 RTWW2_3_F06.g1_A021 Well-watered lob... 74 2e-011
gb|CF475049.1|CF475049 RTWW2_5_F07.g1_A021 Well-watered lob... 74 2e-011
gb|CF667373.1|CF667373 RTCNT1_29_G06.g1_A029 Root control P... 74 2e-011
gb|CO200960.1|CO200960 RTCNT2_2_E08.g1_A029 Root control 2 ... 74 2e-011
gb|CO364302.1|CO364302 RTK1_14_H10.g1_A029 Roots minus pota... 74 2e-011
gb|CO364533.1|CO364533 RTK1_16_F09.b1_A029 Roots minus pota... 74 2e-011
gb|CO365638.1|CO365638 RTK1_18_G01.b1_A029 Roots minus pota... 74 2e-011
gb|CO366611.1|CO366611 RTK1_28_H11.g1_A029 Roots minus pota... 74 2e-011
gb|CO366806.1|CO366806 RTK1_30_F01.b1_A029 Roots minus pota... 74 2e-011
gb|CV032615.1|CV032615 RTNACL1_17_G06.b1_A029 Roots plus ad... 74 2e-011
gb|CX713080.1|CX713080 RTPQ1_6_H02.g1_A032 Roots treated wi... 74 2e-011
gb|CX715248.1|CX715248 RTPQ1_32_H07.g1_A032 Roots treated w... 74 2e-011
gb|DR048975.1|DR048975 RTBOR1_12_A06.g1_A029 Roots plus add... 74 2e-011
gb|DR060019.1|DR060019 RTNIT1_25_E05.b1_A029 Roots minus ni... 74 2e-011
gb|DR079275.1|DR079275 RTFEPL1_10_F02.b1_A029 Roots plus ad... 74 2e-011
gb|DR117184.1|DR117184 RTMG1_5_G03.b1_A029 Roots minus magn... 74 2e-011
gb|DR161623.1|DR161623 RTFE1_12_H10.g1_A029 Roots minus iro... 74 2e-011
gb|DR168806.1|DR168806 RTPHOS1_28_A08.b1_A029 Roots minus p... 74 2e-011
gb|DR388710.1|DR388710 RTHG1_30_B09.b1_A029 Roots plus adde... 74 2e-011
gb|DR688764.1|DR688764 EST1078849 Normalized pine embryo li... 74 2e-011
gb|DR695054.1|DR695054 EST1085147 Normalized pine embryo li... 74 2e-011
gb|CO364076.1|CO364076 RTK1_13_C01.g1_A029 Roots minus pota... 72 8e-011
gb|DR387999.1|DR387999 RTHG1_25_C04.g1_A029 Roots plus adde... 72 8e-011
gb|BM427813.1|BM427813 NXRV_003_F06_F NXRV (Nsf Xylem Root ... 68 1e-009
gb|CO165319.1|CO165319 FLD1_53_F10.g1_A029 Root flooded Pin... 66 5e-009
gb|DR682449.1|DR682449 EST1072524 Normalized pine embryo li... 66 5e-009
gb|AA556894.1|AA556894 736 Loblolly pine C Pinus taeda cDNA... 64 2e-008
gb|BQ699017.1|BQ699017 NXRV118_D06_F NXRV (Nsf Xylem Root w... 64 2e-008
gb|BQ702345.1|BQ702345 NXSI_127_F04_F NXSI (Nsf Xylem Side ... 64 2e-008
gb|DR120605.1|DR120605 RTMG1_30_F12.g1_A029 Roots minus mag... 64 2e-008
gb|DR177127.1|DR177127 RTMNUT1_3_G04.b1_A029 Roots minus mi... 64 2e-008
gb|BG275137.1|BG275137 NXSI_140_C06_F NXSI (Nsf Xylem Side ... 58 1e-006
gb|BM492730.1|BM492730 NXRV_030_D05_F NXRV (Nsf Xylem Root ... 58 1e-006
gb|BQ702261.1|BQ702261 NXSI_126_E12_F NXSI (Nsf Xylem Side ... 58 1e-006
gb|CV033965.1|CV033965 RTNACL1_37_E07.g1_A029 Roots plus ad... 54 2e-005
gb|AI813068.1|AI813068 20D12 Pine Lambda Zap Xylem library ... 50 3e-004
gb|AW290522.1|AW290522 NXNV025B05F Nsf Xylem Normal wood Ve... 50 3e-004
gb|AL751172.1|AL751172 AL751172 RS Pinus pinaster cDNA clon... 50 3e-004
gb|AW888166.1|AW888166 NXNV_126_E08_F Nsf Xylem Normal wood... 50 3e-004
gb|BF517268.1|BF517268 NXSI_012_D07_F NXSI (Nsf Xylem Side ... 50 3e-004
gb|BQ655596.1|BQ655596 NXRV096_F06_F NXRV (Nsf Xylem Root w... 50 3e-004
gb|CD027181.1|CD027181 NXNV025B05 Nsf Xylem Normal wood Ver... 50 3e-004
gb|CF394822.1|CF394822 RTDS2_7_D02.g1_A021 Drought-stressed... 50 3e-004
gb|CF473787.1|CF473787 RTWW2_4_C01.g1_A021 Well-watered lob... 50 3e-004
gb|CF479310.1|CF479310 RTWW3_23_B10.b1_A022 Well-watered lo... 50 3e-004
gb|CF479400.1|CF479400 RTWW3_23_B10.g1_A022 Well-watered lo... 50 3e-004
gb|CF666231.1|CF666231 RTCNT1_21_G03.g1_A029 Root control P... 50 3e-004
gb|CF667193.1|CF667193 RTCNT1_28_E12.g1_A029 Root control P... 50 3e-004
gb|CF669306.1|CF669306 RTCNT1_42_F05.b1_A029 Root control P... 50 3e-004
gb|BX677750.1|BX677750 BX677750 RN Pinus pinaster cDNA clon... 50 3e-004
gb|BX679813.1|BX679813 BX679813 RS Pinus pinaster cDNA clon... 50 3e-004
gb|BX680731.1|BX680731 BX680731 RS Pinus pinaster cDNA clon... 50 3e-004
gb|BX681192.1|BX681192 BX681192 RS Pinus pinaster cDNA clon... 50 3e-004
gb|BX682860.1|BX682860 BX682860 Pinus pinaster differenciat... 50 3e-004
gb|BX784134.1|BX784134 BX784134 Pinus pinaster differenciat... 50 3e-004
gb|CO160604.1|CO160604 FLD1_22_E10.b1_A029 Root flooded Pin... 50 3e-004
gb|CO164438.1|CO164438 FLD1_48_B06.b1_A029 Root flooded Pin... 50 3e-004
gb|CO164480.1|CO164480 FLD1_48_F11.b1_A029 Root flooded Pin... 50 3e-004
gb|CO164513.1|CO164513 FLD1_48_B06.g1_A029 Root flooded Pin... 50 3e-004
gb|CO164553.1|CO164553 FLD1_48_F11.g1_A029 Root flooded Pin... 50 3e-004
gb|CO176666.1|CO176666 NDL1_63_A09.g1_A029 Needles control ... 50 3e-004
gb|CO199803.1|CO199803 GEO2_3_C10.g1_A032 Root gravitropism... 50 3e-004
gb|CO200086.1|CO200086 GEO2_5_G10.b1_A032 Root gravitropism... 50 3e-004
gb|CO200173.1|CO200173 GEO2_5_G10.g1_A032 Root gravitropism... 50 3e-004
gb|CO200386.1|CO200386 GEO2_7_D06.b1_A032 Root gravitropism... 50 3e-004
gb|CO200466.1|CO200466 GEO2_7_D06.g1_A032 Root gravitropism... 50 3e-004
gb|CO368344.1|CO368344 RTK1_40_C07.b1_A029 Roots minus pota... 50 3e-004
gb|CO369749.1|CO369749 RTK1_53_A10.g1_A029 Roots minus pota... 50 3e-004
gb|CV031546.1|CV031546 RTNACL1_2_F04.b1_A029 Roots plus add... 50 3e-004
gb|CV033223.1|CV033223 RTNACL1_33_D06.b1_A029 Roots plus ad... 50 3e-004
gb|CV033690.1|CV033690 RTNACL1_36_C01.b1_A029 Roots plus ad... 50 3e-004
gb|CV034587.1|CV034587 RTNACL1_10_E02.b1_A029 Roots plus ad... 50 3e-004
gb|CV034654.1|CV034654 RTNACL1_10_E02.g1_A029 Roots plus ad... 50 3e-004
gb|CX646699.1|CX646699 COLD1_11_A08.b1_A029 Root cold Pinus... 50 3e-004
gb|CX646771.1|CX646771 COLD1_11_A08.g1_A029 Root cold Pinus... 50 3e-004
gb|CX649579.1|CX649579 COLD1_36_D11.b1_A029 Root cold Pinus... 50 3e-004
gb|CX651223.1|CX651223 COLD1_51_A08.b1_A029 Root cold Pinus... 50 3e-004
gb|DR015705.1|DR015705 STRS1_5_D07.b1_A034 Shoot tip pitch ... 50 3e-004
gb|DR015708.1|DR015708 STRS1_5_D10.b1_A034 Shoot tip pitch ... 50 3e-004
gb|DR015877.1|DR015877 STRS1_6_F05.b1_A034 Shoot tip pitch ... 50 3e-004
gb|DR015957.1|DR015957 STRS1_6_F05.g1_A034 Shoot tip pitch ... 50 3e-004
gb|DR021043.1|DR021043 STRS1_42_A09.b1_A034 Shoot tip pitch... 50 3e-004
gb|DR021115.1|DR021115 STRS1_42_A09.g1_A034 Shoot tip pitch... 50 3e-004
gb|DR022907.1|DR022907 STRS1_54_F08.b1_A034 Shoot tip pitch... 50 3e-004
gb|DR047440.1|DR047440 RTBOR1_1_C05.b1_A029 Roots plus adde... 50 3e-004
gb|DR052867.1|DR052867 RTCA1_7_A02.g1_A029 Roots minus calc... 50 3e-004
gb|DR053629.1|DR053629 RTCA1_12_H03.b1_A029 Roots minus cal... 50 3e-004
gb|DR054888.1|DR054888 RTCA1_20_E04.b1_A029 Roots minus cal... 50 3e-004
gb|DR054962.1|DR054962 RTCA1_20_E04.g1_A029 Roots minus cal... 50 3e-004
gb|DR057637.1|DR057637 RTNIT1_7_A05.b1_A029 Roots minus nit... 50 3e-004
gb|DR060091.1|DR060091 RTNIT1_25_D07.g1_A029 Roots minus ni... 50 3e-004
gb|DR090593.1|DR090593 RTAL1_16_D08.b1_A029 Roots plus adde... 50 3e-004
gb|DR090668.1|DR090668 RTAL1_16_D08.g1_A029 Roots plus adde... 50 3e-004
gb|DR098216.1|DR098216 STRR1_39_H06.g1_A033 Stem Response R... 50 3e-004
gb|DR100578.1|DR100578 STRR1_65_E10.b1_A033 Stem Response R... 50 3e-004
gb|DR110002.1|DR110002 RTS1_1_F11.b1_A029 Roots minus sulfu... 50 3e-004
gb|DR109404.1|DR109404 RTS1_1_F11.g1_A029 Roots minus sulfu... 50 3e-004
gb|DR179282.1|DR179282 RTMNUT1_21_D06.b2_A029 Roots minus m... 50 3e-004
gb|DR388534.1|DR388534 RTHG1_28_G10.g1_A029 Roots plus adde... 50 3e-004
gb|AL750379.1|AL750379 AL750379 RN Pinus pinaster cDNA clon... 48 0.001
gb|BE187292.1|BE187292 NXNV_162_B07_F Nsf Xylem Normal wood... 48 0.001
gb|BF010499.1|BF010499 NXCI_084_G05_F NXCI (Nsf Xylem Compr... 48 0.001
gb|BQ703111.1|BQ703111 NXSI_136_F02_F NXSI (Nsf Xylem Side ... 48 0.001
gb|DR163460.1|DR163460 RTFE1_43_C01.b1_A029 Roots minus iro... 48 0.001
gb|CV031630.1|CV031630 RTNACL1_2_F04.g1_A029 Roots plus add... 46 0.005
gb|DR388449.1|DR388449 RTHG1_28_G10.b1_A029 Roots plus adde... 46 0.005
gb|CO176595.1|CO176595 NDL1_63_A09.b1_A029 Needles control ... 42 0.071
gb|AW985341.1|AW985341 NXNV_134_B09_F Nsf Xylem Normal wood... 40 0.28
gb|BE123522.1|BE123522 NXNV_149_C01_F Nsf Xylem Normal wood... 40 0.28
gb|BF777222.1|BF777222 NXSI_066_F06_F NXSI (Nsf Xylem Side ... 40 0.28
gb|BG040155.1|BG040155 NXSI_109_A07_F NXSI (Nsf Xylem Side ... 40 0.28
gb|BX682653.1|BX682653 BX682653 Pinus pinaster differenciat... 40 0.28
gb|CX714077.1|CX714077 RTPQ1_17_G07.b1_A032 Roots treated w... 40 0.28
gb|DR117389.1|DR117389 RTMG1_6_E04.g1_A029 Roots minus magn... 40 0.28
>gb|AW064596.1|AW064596 ST33D09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST33D09, mRNA sequence
Length = 591
Score = 103 bits (52), Expect = 2e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 419 cctcctcccattccntctttcagggcatcttctccatactgatcatatatctcccttttt 360
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 359 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 300
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 299 cccttatcagggtgatttttgatggcagcttttct 265
>gb|BE123609.1|BE123609 NXNV_146_C11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_146_C11 5' similar to Arabidopsis thaliana sequence
At5g22060 DNAJ PROTEIN HOMOLOG ATJ see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 306
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 175 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 116
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 115 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 56
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 55 cccttatcagggtgatttttgatggcagcttttct 21
>gb|CF390139.1|CF390139 RTDR2_12_E04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_12_E04_A021 5', mRNA
sequence
Length = 674
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 337 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 278
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 277 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 218
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 217 cccttatcagggtgatttttgatggcagcttttct 183
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 496 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 437
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 436 tgccttcggccccttgagct 417
>gb|CF473550.1|CF473550 RTWW2_3_H01.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_3_H01_A021 5', mRNA sequence
Length = 702
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 367 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 308
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 307 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 248
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 247 cccttatcagggtgatttttgatggcagcttttct 213
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 526 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 467
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 466 tgccttcggccccttgagct 447
>gb|CF669350.1|CF669350 RTCNT1_42_F05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_42_F05_A029 5', mRNA sequence
Length = 656
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 402 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 343
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 342 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 283
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 282 cccttatcagggtgatttttgatggcagcttttct 248
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 561 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 502
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 501 tgccttcggccccttgagct 482
>gb|CO368425.1|CO368425 RTK1_40_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_C07_A029 5', mRNA sequence
Length = 813
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 379 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 320
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 319 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 260
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 259 cccttatcagggtgatttttgatggcagcttttct 225
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 538 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 479
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 478 tgccttcggccccttgagct 459
>gb|CV033295.1|CV033295 RTNACL1_33_D06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_D06_A029 5', mRNA sequence
Length = 600
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 406 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 347
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 346 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 287
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 286 cccttatcagggtgatttttgatggcagcttttct 252
>gb|CX651299.1|CX651299 COLD1_51_A08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_A08_A029 5', mRNA sequence
Length = 516
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 349 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 290
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 289 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 230
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 229 cccttatcagggtgatttttgatggcagcttttct 195
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 508 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 449
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 448 tgccttcggccccttgagct 429
>gb|DR060009.1|DR060009 RTNIT1_25_D07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_25_D07_A029 3', mRNA sequence
Length = 802
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Plus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 435 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 494
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 495 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 554
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 555 cccttatcagggtgatttttgatggcagcttttct 589
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 276 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 335
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 336 tgccttcggccccttgagct 355
>gb|DR089543.1|DR089543 RTAL1_9_H03.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_9_H03_A029 3', mRNA sequence
Length = 768
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Plus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 385 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 444
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 445 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 504
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 505 cccttatcagggtgatttttgatggcagcttttct 539
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 226 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 285
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 286 tgccttcggccccttgagct 305
>gb|DR163547.1|DR163547 RTFE1_43_C01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_C01_A029 5', mRNA sequence
Length = 821
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 366 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 307
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 306 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 247
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 246 cccttatcagggtgatttttgatggcagcttttct 212
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 525 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 466
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 465 tgccttcggccccttgagct 446
>gb|DR182342.1|DR182342 RTMNUT1_44_A01.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_44_A01_A029 5', mRNA sequence
Length = 695
Score = 101 bits (51), Expect = 9e-020
Identities = 129/155 (83%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 357 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccttttt 298
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 297 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 238
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 237 cccttatcagggtgatttttgatggcagcttttct 203
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 516 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 457
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 456 tgccttcggccccttgagct 437
>gb|BI397729.1|BI397729 NXPV_104_F04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_104_F04 5' similar to Arabidopsis
thaliana sequence At3g44110 dnaJ protein homolog atj3 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 478
Score = 95.6 bits (48), Expect = 6e-018
Identities = 128/155 (82%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
|||||||||||||| || || |||||||||||||||||||| ||||| ||||||| ||
Sbjct: 388 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctcccntttt 329
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 328 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 269
Query: 1474 cccttatcaggatggttttttatggcagcttttct 1508
||||||||||| || ||||| ||||||||||||||
Sbjct: 268 cccttatcagggtgatttttgatggcagcttttct 234
>gb|BX249446.1|BX249446 BX249446 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP024B04, mRNA sequence
Length = 669
Score = 89.7 bits (45), Expect = 3e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 333 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 274
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || ||||| || |||| || || |||||||| || || ||||||||||||
Sbjct: 273 tcactaagtacctcataggcctgagcaagttccttaaacttttctggatctccaccctta 214
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 213 tccggatggtttttgatagcagcctttctgtaagctttctt 173
>gb|BX252596.1|BX252596 BX252596 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP067C06 similar to DNAJ PROTEIN, mRNA
sequence
Length = 659
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
||||||||||| || || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 392 cctcctcccatcccctctttcagggcatcttctccatactgatcatatatctcccttttt 333
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 332 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 273
Query: 1474 cccttatcaggatggttttttatggcagcttttctgtatgctttcttaagctcatc 1529
||||| ||||| || ||||| |||||||||||||| || || ||||| | ||||||
Sbjct: 272 cccttgtcagggtgatttttgatggcagcttttctataagccttcttcaactcatc 217
Score = 56.0 bits (28), Expect = 5e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 551 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 492
Query: 1258 tgtctgcgtcctcttgagctaccacccccaaa 1289
|| || || || |||||||||||||| |||||
Sbjct: 491 tgccttcggccccttgagctaccacctccaaa 460
>gb|BX252900.1|BX252900 BX252900 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP074F04 similar to DNAJ PROTEIN, mRNA
sequence
Length = 443
Score = 87.7 bits (44), Expect = 1e-015
Identities = 143/176 (81%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctcttc 1413
||||||||||| || || || |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 391 cctcctcccatcccctctttcagggcatcttctccatactgatcatatatctcccttttt 332
Query: 1414 tccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcca 1473
|| || ||||| | || |||||||| |||| || ||||| || || || || || |||
Sbjct: 331 tctggatcactcaagacttcataagcctgagccaattctttgaatttttctggatcccca 272
Query: 1474 cccttatcaggatggttttttatggcagcttttctgtatgctttcttaagctcatc 1529
||||| ||||| || ||||| |||||||||||||| || || ||||| | ||||||
Sbjct: 271 cccttgtcagggtgatttttgatggcagcttttctataagccttcttcaactcatc 216
>gb|CF389500.1|CF389500 RTDR2_7_F04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_F04_A021 5', mRNA sequence
Length = 756
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 415 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 356
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 355 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 296
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 295 tccggatggtttttgatagcagcctttctgtaagctttctt 255
>gb|CF395787.1|CF395787 RTDS2_17_A05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_17_A05_A021 5', mRNA sequence
Length = 708
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 279 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 220
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 219 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 160
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 159 tccggatggtttttgatagcagcctttctgtaagctttctt 119
>gb|CF473569.1|CF473569 RTWW2_3_F06.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_3_F06_A021 5', mRNA sequence
Length = 683
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 221 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 162
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 161 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 102
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 101 tccggatggtttttgatagcagcctttctgtaagctttctt 61
>gb|CF475049.1|CF475049 RTWW2_5_F07.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_5_F07_A021 5', mRNA sequence
Length = 724
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 374 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 315
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 314 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 255
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 254 tccggatggtttttgatagcagcctttctgtaagctttctt 214
>gb|CF667373.1|CF667373 RTCNT1_29_G06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_G06_A029 5', mRNA sequence
Length = 649
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 221 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 162
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 161 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 102
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 101 tccggatggtttttgatagcagcctttctgtaagctttctt 61
>gb|CO200960.1|CO200960 RTCNT2_2_E08.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_E08_A029 5', mRNA sequence
Length = 713
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 519 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 460
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 459 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 400
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 399 tccggatggtttttgatagcagcctttctgtaagctttctt 359
>gb|CO364302.1|CO364302 RTK1_14_H10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_H10_A029 5', mRNA sequence
Length = 865
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 255 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 196
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 195 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 136
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 135 tccggatggtttttgatagcagcctttctgtaagctttctt 95
>gb|CO364533.1|CO364533 RTK1_16_F09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_16_F09_A029 3', mRNA sequence
Length = 833
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 522 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 581
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 582 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 641
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 642 tccggatggtttttgatagcagcctttctgtaagctttctt 682
>gb|CO365638.1|CO365638 RTK1_18_G01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_18_G01_A029 3', mRNA sequence
Length = 806
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 292 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 351
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 352 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 411
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 412 tccggatggtttttgatagcagcctttctgtaagctttctt 452
>gb|CO366611.1|CO366611 RTK1_28_H11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_H11_A029 5', mRNA sequence
Length = 782
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 518 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 459
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 458 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 399
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 398 tccggatggtttttgatagcagcctttctgtaagctttctt 358
>gb|CO366806.1|CO366806 RTK1_30_F01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_F01_A029 3', mRNA sequence
Length = 794
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 266 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 325
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 326 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 385
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 386 tccggatggtttttgatagcagcctttctgtaagctttctt 426
>gb|CV032615.1|CV032615 RTNACL1_17_G06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_17_G06_A029 3', mRNA sequence
Length = 753
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 322 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 381
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 382 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 441
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 442 tccggatggtttttgatagcagcctttctgtaagctttctt 482
>gb|CX713080.1|CX713080 RTPQ1_6_H02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_6_H02_A032 5', mRNA sequence
Length = 653
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 394 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 335
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 334 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 275
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 274 tccggatggtttttgatagcagcctttctgtaagctttctt 234
>gb|CX715248.1|CX715248 RTPQ1_32_H07.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_32_H07_A032 5', mRNA sequence
Length = 708
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 394 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 335
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 334 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 275
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 274 tccggatggtttttgatagcagcctttctgtaagctttctt 234
>gb|DR048975.1|DR048975 RTBOR1_12_A06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_12_A06_A029 5', mRNA sequence
Length = 806
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 469 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 410
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 409 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 350
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 349 tccggatggtttttgatagcagcctttctgtaagctttctt 309
>gb|DR060019.1|DR060019 RTNIT1_25_E05.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_25_E05_A029 3', mRNA sequence
Length = 754
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 330 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 389
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 390 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 449
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 450 tccggatggtttttgatagcagcctttctgtaagctttctt 490
>gb|DR079275.1|DR079275 RTFEPL1_10_F02.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_10_F02_A029 3', mRNA sequence
Length = 847
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 425 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 366
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 365 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 306
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 305 tccggatggtttttgatagcagcctttctgtaagctttctt 265
>gb|DR117184.1|DR117184 RTMG1_5_G03.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_5_G03_A029 3', mRNA sequence
Length = 896
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 546 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 605
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 606 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 665
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 666 tccggatggtttttgatagcagcctttctgtaagctttctt 706
>gb|DR161623.1|DR161623 RTFE1_12_H10.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_H10_A029 5', mRNA sequence
Length = 570
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 494 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 435
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 434 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 375
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 374 tccggatggtttttgatagcagcctttctgtaagctttctt 334
>gb|DR168806.1|DR168806 RTPHOS1_28_A08.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_28_A08_A029 3', mRNA sequence
Length = 784
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 267 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 326
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 327 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 386
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 387 tccggatggtttttgatagcagcctttctgtaagctttctt 427
>gb|DR388710.1|DR388710 RTHG1_30_B09.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_30_B09_A029 3', mRNA sequence
Length = 799
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 542 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 601
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 602 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 661
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 662 tccggatggtttttgatagcagcctttctgtaagctttctt 702
>gb|DR688764.1|DR688764 EST1078849 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACA31 3' end, mRNA sequence
Length = 662
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 333 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 274
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 273 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 214
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 213 tccggatggtttttgatagcagcctttctgtaagctttctt 173
>gb|DR695054.1|DR695054 EST1085147 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEJ90 3' end, mRNA sequence
Length = 814
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 442 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 383
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 382 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 323
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 322 tccggatggtttttgatagcagcctttctgtaagctttctt 282
>gb|CO364076.1|CO364076 RTK1_13_C01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C01_A029 5', mRNA sequence
Length = 902
Score = 71.9 bits (36), Expect = 8e-011
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccct 1409
|||||||||||||| || || |||||||||||||||||||| ||||| ||||||||
Sbjct: 129 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctccct 74
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 828 ttgcaagacaaaaacaatgtctcctgtaaccgtatcaggagcttcatcagcttgaccctg 887
|||||| |||||||||||||| || || || || || || ||||||||||||| ||||||
Sbjct: 658 ttgcaatacaaaaacaatgtccccagttacagtgtccggcgcttcatcagcttcaccctg 599
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 288 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 229
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 228 tgccttcggccccttgagct 209
>gb|DR387999.1|DR387999 RTHG1_25_C04.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_25_C04_A029 5', mRNA sequence
Length = 734
Score = 71.9 bits (36), Expect = 8e-011
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 1354 cctcctcccattccttccttaagggcatcttctccatactggtcatagatctccct 1409
|||||||||||||| || || |||||||||||||||||||| ||||| ||||||||
Sbjct: 78 cctcctcccattccctctttcagggcatcttctccatactgatcatatatctccct 23
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 828 ttgcaagacaaaaacaatgtctcctgtaaccgtatcaggagcttcatcagcttgaccctg 887
|||||| |||||||||||||| || || || || || || ||||||||||||| ||||||
Sbjct: 607 ttgcaatacaaaaacaatgtccccagttacagtgtccggcgcttcatcagcttcaccctg 548
Score = 40.1 bits (20), Expect = 0.28
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 1198 ccattgtacagatcgtctaaggaaaccttcatagtatgcaccacatcttcaccacgcttt 1257
||||||||||| || || | |||||||||| || ||| || ||||||||||| |||||
Sbjct: 237 ccattgtacaggtcctccagagaaaccttcagaggatgtacaacatcttcaccttgcttt 178
Query: 1258 tgtctgcgtcctcttgagct 1277
|| || || || ||||||||
Sbjct: 177 tgccttcggccccttgagct 158
>gb|BM427813.1|BM427813 NXRV_003_F06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_003_F06 5' similar to Arabidopsis thaliana
sequence At3g44110 dnaJ protein homolog atj3 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 578
Score = 67.9 bits (34), Expect = 1e-009
Identities = 129/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||| ||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 419 cccattcnttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 360
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 359 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 300
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 299 tccggatggtttttgatagcagcctttctgtaagctttctt 259
>gb|CO165319.1|CO165319 FLD1_53_F10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_53_F10_A029 5', mRNA sequence
Length = 836
Score = 65.9 bits (33), Expect = 5e-009
Identities = 129/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || |||| ||||| || || || ||||| ||
Sbjct: 415 cccattccttctttgagtgcatcctccccgtactcatcataaatgtctcttttctcagga 356
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || |||||||| || || |||||||||||
Sbjct: 355 tcactaagtacctcgtaggcctgagcaagttccttaaacttttctggatctccacccttg 296
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 295 tccggatggtttttgatagcagcctttctgtaagctttctt 255
>gb|DR682449.1|DR682449 EST1072524 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA990 3' end, mRNA sequence
Length = 791
Score = 65.9 bits (33), Expect = 5e-009
Identities = 129/161 (80%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||| || || ||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 224 cccattccttctttgagtgcatcctccccgtactgatcataaatgtctcttttctcagga 165
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
|||||||| || || || || |||| || || | |||||| || || |||||||||||
Sbjct: 164 tcactaagtacctcgtaggcctgagcaagttcctcaaacttttctggatctccacccttg 105
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|| ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 104 tccggatggtttttgatagcagcctttctgtaagctttctt 64
>gb|AA556894.1|AA556894 736 Loblolly pine C Pinus taeda cDNA clone 7C12B, mRNA sequence
Length = 605
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1453 ttaaacttctcagggtctccacccttatcaggatggttttttatggcagcttttctgtat 1512
|||||||| || || ||||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 260 ttaaacttttctggatctccacccttgtccggatggtttttgatagcagcctttctgtaa 201
Query: 1513 gctttctt 1520
||||||||
Sbjct: 200 gctttctt 193
>gb|BQ699017.1|BQ699017 NXRV118_D06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV118_D06 5' similar to Arabidopsis thaliana
sequence At3g44110 dnaJ protein homolog atj3 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 495
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1453 ttaaacttctcagggtctccacccttatcaggatggttttttatggcagcttttctgtat 1512
|||||||| || || ||||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 325 ttaaacttttctggatctccacccttgtccggatggtttttgatagcagcctttctgtaa 266
Query: 1513 gctttctt 1520
||||||||
Sbjct: 265 gctttctt 258
>gb|BQ702345.1|BQ702345 NXSI_127_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_127_F04 5' similar to Arabidopsis thaliana
sequence At3g44110 dnaJ protein homolog atj3 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 547
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1453 ttaaacttctcagggtctccacccttatcaggatggttttttatggcagcttttctgtat 1512
|||||||| || || ||||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 393 ttaaacttttctggatctccacccttgtccggatggtttttgatagcagcctttctgtaa 334
Query: 1513 gctttctt 1520
||||||||
Sbjct: 333 gctttctt 326
>gb|DR120605.1|DR120605 RTMG1_30_F12.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_F12_A029 5', mRNA sequence
Length = 420
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1453 ttaaacttctcagggtctccacccttatcaggatggttttttatggcagcttttctgtat 1512
|||||||| || || ||||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 411 ttaaacttttctggatctccacccttgtccggatggtttttgatagcagcctttctgtaa 352
Query: 1513 gctttctt 1520
||||||||
Sbjct: 351 gctttctt 344
>gb|DR177127.1|DR177127 RTMNUT1_3_G04.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_G04_A029 3', mRNA sequence
Length = 573
Score = 63.9 bits (32), Expect = 2e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1453 ttaaacttctcagggtctccacccttatcaggatggttttttatggcagcttttctgtat 1512
|||||||| || || ||||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 147 ttaaacttttctggatctccacccttgtccggatggtttttgatagcagcctttctgtaa 206
Query: 1513 gctttctt 1520
||||||||
Sbjct: 207 gctttctt 214
>gb|BG275137.1|BG275137 NXSI_140_C06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_140_C06 5' similar to Arabidopsis thaliana
sequence At3g44110 dnaJ protein homolog atj3 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 438
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1468 tctccacccttatcaggatggttttttatggcagcttttctgtatgctttctt 1520
||||||||||| || ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 235 tctccacccttgtccggatggtttttgatagcagcctttctgtaagctttctt 183
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 203,657
Number of Sequences: 355925
Number of extensions: 203657
Number of successful extensions: 53951
Number of sequences better than 0.5: 132
Number of HSP's better than 0.5 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53414
Number of HSP's gapped (non-prelim): 467
length of query: 1645
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1625
effective length of database: 210,158,737
effective search space: 341507947625
effective search space used: 341507947625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)