BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF391585.1|CF391585 RTDR3_9_D12.g1_A022 Loblolly pine ro... 157 1e-036
gb|DR684023.1|DR684023 EST1074100 Normalized pine embryo li... 157 1e-036
gb|DT631926.1|DT631926 EST1146857 Normalized pine embryo li... 157 1e-036
gb|AW497794.1|AW497794 PC02D01 Pine TriplEx pollen cone lib... 149 2e-034
gb|BM492088.1|BM492088 NXRV_020_E03_F NXRV (Nsf Xylem Root ... 149 2e-034
gb|BQ700812.1|BQ700812 NXRV111_F10_F NXRV (Nsf Xylem Root w... 149 2e-034
gb|CF388818.1|CF388818 RTDR2_15_G08.g1_A021 Loblolly pine r... 149 2e-034
gb|CF397754.1|CF397754 RTDS3_1_B02.g1_A022 Drought-stressed... 149 2e-034
gb|CF472745.1|CF472745 RTDS1_11_H01.g1_A015 Drought-stresse... 149 2e-034
gb|CF667020.1|CF667020 RTCNT1_27_E06.g1_A029 Root control P... 149 2e-034
gb|CF667188.1|CF667188 RTCNT1_28_E06.g1_A029 Root control P... 149 2e-034
gb|CF670179.1|CF670179 RTCNT1_48_C07.g1_A029 Root control P... 149 2e-034
gb|CF671154.1|CF671154 RTCNT1_55_D04.b1_A029 Root control P... 149 2e-034
gb|CF671787.1|CF671787 RTCNT1_59_F09.b1_A029 Root control P... 149 2e-034
gb|CO163653.1|CO163653 FLD1_43_A05.b1_A029 Root flooded Pin... 149 2e-034
gb|CO163731.1|CO163731 FLD1_43_A05.g1_A029 Root flooded Pin... 149 2e-034
gb|CO201236.1|CO201236 RTCNT2_4_A12.g1_A029 Root control 2 ... 149 2e-034
gb|DR012196.1|DR012196 HEAT1_10_H04.g1_A029 Root at 37 C fo... 149 2e-034
gb|DR023504.1|DR023504 STRS1_58_D02.b1_A034 Shoot tip pitch... 149 2e-034
gb|DR023575.1|DR023575 STRS1_58_D02.g1_A034 Shoot tip pitch... 149 2e-034
gb|DR023795.1|DR023795 STRS1_60_D03.b1_A034 Shoot tip pitch... 149 2e-034
gb|DR054611.1|DR054611 RTCA1_18_A09.g1_A029 Roots minus cal... 149 2e-034
gb|DR091562.1|DR091562 RTAL1_22_B02.g1_A029 Roots plus adde... 149 2e-034
gb|DR109868.1|DR109868 RTS1_6_B07.b1_A029 Roots minus sulfu... 149 2e-034
gb|DR109927.1|DR109927 RTS1_6_B07.g1_A029 Roots minus sulfu... 149 2e-034
gb|DR181798.1|DR181798 RTMNUT1_41_C09.b1_A029 Roots minus m... 149 2e-034
gb|DR181881.1|DR181881 RTMNUT1_41_C09.g1_A029 Roots minus m... 149 2e-034
gb|DR683857.1|DR683857 EST1073933 Normalized pine embryo li... 149 2e-034
gb|DT631830.1|DT631830 EST1146761 Normalized pine embryo li... 149 2e-034
gb|BM902756.1|BM902756 NXLV_073_G12_F NXLV (Nsf Xylem Late ... 145 4e-033
gb|AW042851.1|AW042851 ST26B10 Pine TriplEx shoot tip libra... 143 2e-032
gb|AW011604.1|AW011604 ST22G08 Pine TriplEx shoot tip libra... 141 6e-032
gb|AW043372.1|AW043372 ST32F01 Pine TriplEx shoot tip libra... 141 6e-032
gb|DR023876.1|DR023876 STRS1_60_D03.g1_A034 Shoot tip pitch... 141 6e-032
gb|DR387317.1|DR387317 RTHG1_21_A07.b1_A029 Roots plus adde... 141 6e-032
gb|CF397679.1|CF397679 RTDS3_1_B02.b2_A022 Drought-stressed... 96 3e-018
gb|CO200537.1|CO200537 GEO2_8_B10.b1_A032 Root gravitropism... 96 3e-018
gb|CO200619.1|CO200619 GEO2_8_B10.g1_A032 Root gravitropism... 96 3e-018
gb|CF670099.1|CF670099 RTCNT1_48_C07.b1_A029 Root control P... 88 8e-016
gb|CF666946.1|CF666946 RTCNT1_27_E06.b1_A029 Root control P... 48 7e-004
gb|CF667101.1|CF667101 RTCNT1_28_E06.b1_A029 Root control P... 48 7e-004
gb|CO159194.1|CO159194 FLD1_12_C07.b1_A029 Root flooded Pin... 40 0.16
gb|CO165106.1|CO165106 FLD1_52_H11.b1_A029 Root flooded Pin... 40 0.16
gb|CX650669.1|CX650669 COLD1_47_F11.b1_A029 Root cold Pinus... 40 0.16
gb|CX652704.1|CX652704 COLD1_61_A05.b1_A029 Root cold Pinus... 40 0.16
gb|DR091490.1|DR091490 RTAL1_22_A10.b1_A029 Roots plus adde... 40 0.16
gb|DR389030.1|DR389030 RTHG1_32_B01.b1_A029 Roots plus adde... 40 0.16
>gb|CF391585.1|CF391585 RTDR3_9_D12.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_9_D12_A022 5', mRNA
sequence
Length = 606
Score = 157 bits (79), Expect = 1e-036
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct: 279 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtc 338
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||
Sbjct: 339 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgca 398
Query: 221 aggaggt 227
| |||||
Sbjct: 399 aagaggt 405
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||| ||||| | |||||||||||||||
Sbjct: 464 atgaaggaagacgataacaactggcctgagcc 495
>gb|DR684023.1|DR684023 EST1074100 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO06 3' end, mRNA sequence
Length = 824
Score = 157 bits (79), Expect = 1e-036
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct: 284 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtc 343
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||
Sbjct: 344 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgca 403
Query: 221 aggaggt 227
| |||||
Sbjct: 404 aagaggt 410
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||| ||||| | |||||||||||||||
Sbjct: 469 atgaaggaagacgataacaactggcctgagcc 500
>gb|DT631926.1|DT631926 EST1146857 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFE41 3' end, mRNA sequence
Length = 832
Score = 157 bits (79), Expect = 1e-036
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct: 292 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtc 351
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||
Sbjct: 352 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgca 411
Query: 221 aggaggt 227
| |||||
Sbjct: 412 aagaggt 418
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||| ||||| | |||||||||||||||
Sbjct: 477 atgaaggaagacgataacaactggcctgagcc 508
>gb|AW497794.1|AW497794 PC02D01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC02D01, mRNA sequence
Length = 518
Score = 149 bits (75), Expect = 2e-034
Identities = 105/115 (91%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct: 297 ggtactacgtgggtcacaagggcaaattcggtcacgagtttctcgagttcgaattccgtc 356
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgat 215
||||||||||||||||||| || ||||| || |||||||||||||||||||||||
Sbjct: 357 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgat 411
>gb|BM492088.1|BM492088 NXRV_020_E03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_020_E03 5' similar to Arabidopsis thaliana
sequence At1g02140 Mago Nashi-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 442
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 114 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 173
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 174 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 233
Query: 221 aggaggt 227
| |||||
Sbjct: 234 aagaggt 240
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 299 atgaaggaggacgataacaactggcctgagcc 330
>gb|BQ700812.1|BQ700812 NXRV111_F10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV111_F10 5' similar to Arabidopsis thaliana
sequence At1g02140 Mago Nashi-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 736
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 164 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 223
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 224 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 283
Query: 221 aggaggt 227
| |||||
Sbjct: 284 aagaggt 290
Score = 61.9 bits (31), Expect = 4e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||| | ||||||||||||||| || | | || || |||||||| ||
Sbjct: 349 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 408
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||| ||||| || ||||| || || |||||||| || || || || ||||||
Sbjct: 409 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 468
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|| || |||||||| || || || |||||||| |||||||| || || ||||| ||
Sbjct: 469 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 528
Query: 466 aagtgcttcgtgttttcactcat 488
|||||||| ||||| || |||||
Sbjct: 529 aagtgctttgtgttctctctcat 551
>gb|CF388818.1|CF388818 RTDR2_15_G08.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_15_G08_A021 5', mRNA
sequence
Length = 664
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 28 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 87
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 88 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 147
Query: 221 aggaggt 227
| |||||
Sbjct: 148 aagaggt 154
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 213 atgaaggaggacgataacaactggcctgagcc 244
>gb|CF397754.1|CF397754 RTDS3_1_B02.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_B02_A022 5', mRNA sequence
Length = 721
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 176 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 235
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 236 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 295
Query: 221 aggaggt 227
| |||||
Sbjct: 296 aagaggt 302
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 361 atgaaggaggacgataacaactggcctgagcc 392
>gb|CF472745.1|CF472745 RTDS1_11_H01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_11_H01_A015 5', mRNA sequence
Length = 760
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 61 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 120
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 121 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 180
Query: 221 aggaggt 227
| |||||
Sbjct: 181 aagaggt 187
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 246 atgaaggaggacgataacaactggcctgagcc 277
>gb|CF667020.1|CF667020 RTCNT1_27_E06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_E06_A029 5', mRNA sequence
Length = 828
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 115 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 174
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 175 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 234
Query: 221 aggaggt 227
| |||||
Sbjct: 235 aagaggt 241
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 300 atgaaggaggacgataacaactggcctgagcc 331
>gb|CF667188.1|CF667188 RTCNT1_28_E06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_28_E06_A029 5', mRNA sequence
Length = 793
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 98 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 157
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 158 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 217
Query: 221 aggaggt 227
| |||||
Sbjct: 218 aagaggt 224
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 283 atgaaggaggacgataacaactggcctgagcc 314
>gb|CF670179.1|CF670179 RTCNT1_48_C07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_C07_A029 5', mRNA sequence
Length = 857
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 177 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 236
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 237 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 296
Query: 221 aggaggt 227
| |||||
Sbjct: 297 aagaggt 303
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 362 atgaaggaggacgataacaactggcctgagcc 393
>gb|CF671154.1|CF671154 RTCNT1_55_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_55_D04_A029 3', mRNA sequence
Length = 408
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 149 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 90
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 89 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 30
Query: 221 aggaggt 227
| |||||
Sbjct: 29 aagaggt 23
>gb|CF671787.1|CF671787 RTCNT1_59_F09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_F09_A029 3', mRNA sequence
Length = 698
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 598 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 539
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 538 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 479
Query: 221 aggaggt 227
| |||||
Sbjct: 478 aagaggt 472
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 413 atgaaggaggacgataacaactggcctgagcc 382
>gb|CO163653.1|CO163653 FLD1_43_A05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_43_A05_A029 3', mRNA sequence
Length = 920
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 235 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 294
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 295 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 354
Query: 221 aggaggt 227
| |||||
Sbjct: 355 aagaggt 361
Score = 61.9 bits (31), Expect = 4e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||| | ||||||||||||||| || | | || || |||||||| ||
Sbjct: 420 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 479
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||| ||||| || ||||| || || |||||||| || || || || ||||||
Sbjct: 480 atagttatggggaacgagcatatttcctttactacttccaatataggatctcttgtcgat 539
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|| || |||||||| || || || |||||||| |||||||| || || ||||| ||
Sbjct: 540 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 599
Query: 466 aagtgcttcgtgttttcactcat 488
|||||||| ||||| || |||||
Sbjct: 600 aagtgctttgtgttctctctcat 622
>gb|CO163731.1|CO163731 FLD1_43_A05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_43_A05_A029 5', mRNA sequence
Length = 884
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 218 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 277
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 278 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 337
Query: 221 aggaggt 227
| |||||
Sbjct: 338 aagaggt 344
Score = 61.9 bits (31), Expect = 4e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||| | ||||||||||||||| || | | || || |||||||| ||
Sbjct: 403 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 462
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||| ||||| || ||||| || || |||||||| || || || || ||||||
Sbjct: 463 atagttatggggaacgagcatatttcctttactacttccaatataggatctcttgtcgat 522
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|| || |||||||| || || || |||||||| |||||||| || || ||||| ||
Sbjct: 523 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 582
Query: 466 aagtgcttcgtgttttcactcat 488
|||||||| ||||| || |||||
Sbjct: 583 aagtgctttgtgttctctctcat 605
>gb|CO201236.1|CO201236 RTCNT2_4_A12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_A12_A029 5', mRNA sequence
Length = 687
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 73 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 132
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 133 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 192
Query: 221 aggaggt 227
| |||||
Sbjct: 193 aagaggt 199
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 258 atgaaggaggacgataacaactggcctgagcc 289
>gb|DR012196.1|DR012196 HEAT1_10_H04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_10_H04_A029 5', mRNA sequence
Length = 493
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 180 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 239
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 240 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 299
Query: 221 aggaggt 227
| |||||
Sbjct: 300 atgaggt 306
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 365 atgaaggaggacgataacaactggcctgagcc 396
>gb|DR023504.1|DR023504 STRS1_58_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_D02_A034 3', mRNA sequence
Length = 854
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 85 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 144
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 145 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 204
Query: 221 aggaggt 227
| |||||
Sbjct: 205 aagaggt 211
Score = 61.9 bits (31), Expect = 4e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||| | ||||||||||||||| || | | || || |||||||| ||
Sbjct: 270 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 329
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||| ||||| || ||||| || || |||||||| || || || || ||||||
Sbjct: 330 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 389
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|| || |||||||| || || || |||||||| |||||||| || || ||||| ||
Sbjct: 390 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 449
Query: 466 aagtgcttcgtgttttcactcat 488
|||||||| ||||| || |||||
Sbjct: 450 aagtgctttgtgttctctctcat 472
>gb|DR023575.1|DR023575 STRS1_58_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_D02_A034 5', mRNA sequence
Length = 645
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 166 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 225
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 226 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 285
Query: 221 aggaggt 227
| |||||
Sbjct: 286 aagaggt 292
Score = 61.9 bits (31), Expect = 4e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||| | ||||||||||||||| || | | || || |||||||| ||
Sbjct: 351 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 410
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||| ||||| || ||||| || || |||||||| || || || || ||||||
Sbjct: 411 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 470
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|| || |||||||| || || || |||||||| |||||||| || || ||||| ||
Sbjct: 471 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 530
Query: 466 aagtgcttcgtgttttcactcat 488
|||||||| ||||| || |||||
Sbjct: 531 aagtgctttgtgttctctctcat 553
>gb|DR023795.1|DR023795 STRS1_60_D03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_D03_A034 3', mRNA sequence
Length = 827
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 59 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 118
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 119 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 178
Query: 221 aggaggt 227
| |||||
Sbjct: 179 aagaggt 185
Score = 61.9 bits (31), Expect = 4e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||| | ||||||||||||||| || | | || || |||||||| ||
Sbjct: 244 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 303
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||| ||||| || ||||| || || |||||||| || || || || ||||||
Sbjct: 304 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 363
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|| || |||||||| || || || |||||||| |||||||| || || ||||| ||
Sbjct: 364 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 423
Query: 466 aagtgcttcgtgttttcactcat 488
|||||||| ||||| || |||||
Sbjct: 424 aagtgctttgtgttctctctcat 446
>gb|DR054611.1|DR054611 RTCA1_18_A09.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_A09_A029 5', mRNA sequence
Length = 780
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 603 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 544
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 543 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 484
Query: 221 aggaggt 227
| |||||
Sbjct: 483 aagaggt 477
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 418 atgaaggaggacgataacaactggcctgagcc 387
>gb|DR091562.1|DR091562 RTAL1_22_B02.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_B02_A029 5', mRNA sequence
Length = 784
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 655 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 596
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 595 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 536
Query: 221 aggaggt 227
| |||||
Sbjct: 535 aagaggt 529
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 470 atgaaggaggacgataacaactggcctgagcc 439
>gb|DR109868.1|DR109868 RTS1_6_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_6_B07_A029 3', mRNA sequence
Length = 409
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 294 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 235
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 234 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 175
Query: 221 aggaggt 227
| |||||
Sbjct: 174 aagaggt 168
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 109 atgaaggaggacgataacaactggcctgagcc 78
>gb|DR109927.1|DR109927 RTS1_6_B07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_6_B07_A029 5', mRNA sequence
Length = 497
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 221 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 280
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 281 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 340
Query: 221 aggaggt 227
| |||||
Sbjct: 341 aagaggt 347
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 406 atgaaggaggacgataacaactggcctgagcc 437
>gb|DR181798.1|DR181798 RTMNUT1_41_C09.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_41_C09_A029 3', mRNA sequence
Length = 757
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 648 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 589
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 588 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 529
Query: 221 aggaggt 227
| |||||
Sbjct: 528 aagaggt 522
Score = 61.9 bits (31), Expect = 4e-008
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||| | ||||||||||||||| || | | || || |||||||| ||
Sbjct: 463 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 404
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||| ||||| || ||||| || || |||||||| || || || || ||||||
Sbjct: 403 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 344
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|| || |||||||| || || || |||||||| |||||||| || || ||||| ||
Sbjct: 343 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 284
Query: 466 aagtgcttcgtgttttcactcat 488
|||||||| ||||| || |||||
Sbjct: 283 aagtgctttgtgttctctctcat 261
>gb|DR181881.1|DR181881 RTMNUT1_41_C09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_41_C09_A029 5', mRNA sequence
Length = 725
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 619 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 560
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 559 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 500
Query: 221 aggaggt 227
| |||||
Sbjct: 499 aagaggt 493
Score = 61.9 bits (31), Expect = 4e-008
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccgcatcggccgacaggagctcgag 345
|||||||||||||| | ||||||||||||||| || | | || || |||||||| ||
Sbjct: 434 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 375
Query: 346 atcgtcatgggcaacgaacacatttcattcaccacttccaagatcggctccctcgtcgat 405
|| || ||||| ||||| || ||||| || || |||||||| || || || || ||||||
Sbjct: 374 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 315
Query: 406 gtccagtccagcaaggacccggagggactccggatcttctactacctcgtccaggatctg 465
|| || |||||||| || || || |||||||| |||||||| || || ||||| ||
Sbjct: 314 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 255
Query: 466 aagtgcttcgtgttttcactcat 488
|||||||| ||||| || |||||
Sbjct: 254 aagtgctttgtgttctctctcat 232
>gb|DR683857.1|DR683857 EST1073933 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAM11 3' end, mRNA sequence
Length = 837
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct: 200 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtc 259
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||| ||||||||||||| || ||||| || ||||||||||||||||||||||| ||||
Sbjct: 260 ccgacagcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgca 319
Query: 221 aggaggt 227
| |||||
Sbjct: 320 aagaggt 326
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||| ||||| | |||||||||||||||
Sbjct: 385 atgaaggaagacgataacaactggcctgagcc 416
>gb|DT631830.1|DT631830 EST1146761 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD25 3' end, mRNA sequence
Length = 749
Score = 149 bits (75), Expect = 2e-034
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct: 207 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtc 266
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||| ||||||||||||| || ||||| || ||||||||||||||||||||||| ||||
Sbjct: 267 ccgacagcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgca 326
Query: 221 aggaggt 227
| |||||
Sbjct: 327 aagaggt 333
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||| ||||| | |||||||||||||||
Sbjct: 392 atgaaggaagacgataacaactggcctgagcc 423
>gb|BM902756.1|BM902756 NXLV_073_G12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_073_G12 5' similar to Arabidopsis thaliana
sequence At1g02140 Mago Nashi-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 206
Score = 145 bits (73), Expect = 4e-033
Identities = 109/121 (90%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 68 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 127
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 128 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 187
Query: 221 a 221
|
Sbjct: 188 a 188
>gb|AW042851.1|AW042851 ST26B10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST26B10, mRNA sequence
Length = 526
Score = 143 bits (72), Expect = 2e-032
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 189 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 248
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||| ||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 249 ccgacggnaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 308
Query: 221 aggaggt 227
| |||||
Sbjct: 309 aagaggt 315
>gb|AW011604.1|AW011604 ST22G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22G08, mRNA sequence
Length = 600
Score = 141 bits (71), Expect = 6e-032
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| ||| |||| |||||||| || || || |
Sbjct: 206 ggtactacgtgggtcacaagggcaaattcggccacaagtttctcgagtttgaatttcgtc 265
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 266 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 325
Query: 221 aggaggt 227
| |||||
Sbjct: 326 aagaggt 332
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 391 atgaaggaggacgataacaactggcctgagcc 422
>gb|AW043372.1|AW043372 ST32F01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32F01, mRNA sequence
Length = 600
Score = 141 bits (71), Expect = 6e-032
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 135 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 194
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||| ||||||||||
Sbjct: 195 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacactatgatccgca 254
Query: 221 aggaggt 227
| |||||
Sbjct: 255 aagaggt 261
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 320 atgaaggaggacgataacaactggcctgagcc 351
>gb|DR023876.1|DR023876 STRS1_60_D03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_D03_A034 5', mRNA sequence
Length = 301
Score = 141 bits (71), Expect = 6e-032
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| ||| |||| |||||||| || || || |
Sbjct: 153 ggtactacgtgggtcacaagggcaaattcggccactagtttctcgagtttgaatttcgtc 212
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 213 ccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 272
Query: 221 aggaggt 227
| |||||
Sbjct: 273 aagaggt 279
>gb|DR387317.1|DR387317 RTHG1_21_A07.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_21_A07_A029 3', mRNA sequence
Length = 696
Score = 141 bits (71), Expect = 6e-032
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 101 ggtactacgtggggcacaagggcaagttcgggcacgagttcctcgagttcgagttccgcc 160
||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || || |
Sbjct: 80 ggtactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtc 139
Query: 161 ccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgca 220
||||||||||| ||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct: 140 ccgacggcaagttccgctatgcaaacaattcgaactacaagaacgacaccatgatccgca 199
Query: 221 aggaggt 227
| |||||
Sbjct: 200 aagaggt 206
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 265 atgaaggaggacgataacaactggcctgagcc 296
>gb|CF397679.1|CF397679 RTDS3_1_B02.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_B02_A022 3', mRNA sequence
Length = 558
Score = 95.6 bits (48), Expect = 3e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 160 cccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgc 219
|||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 2 cccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgc 61
Query: 220 aaggaggt 227
|| |||||
Sbjct: 62 aaagaggt 69
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 128 atgaaggaggacgataacaactggcctgagcc 159
>gb|CO200537.1|CO200537 GEO2_8_B10.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_B10_A032 3', mRNA sequence
Length = 426
Score = 95.6 bits (48), Expect = 3e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 160 cccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgc 219
|||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 414 cccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgc 355
Query: 220 aaggaggt 227
|| |||||
Sbjct: 354 aaagaggt 347
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 288 atgaaggaggacgataacaactggcctgagcc 257
>gb|CO200619.1|CO200619 GEO2_8_B10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_B10_A032 5', mRNA sequence
Length = 398
Score = 95.6 bits (48), Expect = 3e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 160 cccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgc 219
|||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 386 cccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgc 327
Query: 220 aaggaggt 227
|| |||||
Sbjct: 326 aaagaggt 319
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 260 atgaaggaggacgataacaactggcctgagcc 229
>gb|CF670099.1|CF670099 RTCNT1_48_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_C07_A029 3', mRNA sequence
Length = 615
Score = 87.7 bits (44), Expect = 8e-016
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 164 acggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaagg 223
|||||||||||||||| || ||||| || ||||||||||||||||||||||||||||| |
Sbjct: 1 acggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaag 60
Query: 224 aggt 227
||||
Sbjct: 61 aggt 64
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 123 atgaaggaggacgataacaactggcctgagcc 154
>gb|CF666946.1|CF666946 RTCNT1_27_E06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_E06_A029 3', mRNA sequence
Length = 686
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 69 atgaaggaggacgataacaactggcctgagcc 100
>gb|CF667101.1|CF667101 RTCNT1_28_E06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_28_E06_A029 3', mRNA sequence
Length = 688
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcc 317
|||||||||||||| | |||||||||||||||
Sbjct: 71 atgaaggaggacgataacaactggcctgagcc 102
>gb|CO159194.1|CO159194 FLD1_12_C07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_C07_A029 3', mRNA sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 11 aattcggcacgaggggaagc 30
>gb|CO165106.1|CO165106 FLD1_52_H11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_H11_A029 3', mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 11 aattcggcacgaggggaagc 30
>gb|CX650669.1|CX650669 COLD1_47_F11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_F11_A029 3', mRNA sequence
Length = 784
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 530 aattcggcacgaggggaagc 549
>gb|CX652704.1|CX652704 COLD1_61_A05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_A05_A029 3', mRNA sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 11 aattcggcacgaggggaagc 30
>gb|DR091490.1|DR091490 RTAL1_22_A10.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_A10_A029 3', mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 aattcggcacgaggggaagccaaa 24
||||||||||||||||| ||||||
Sbjct: 579 aattcggcacgaggggaggccaaa 556
>gb|DR389030.1|DR389030 RTHG1_32_B01.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_32_B01_A029 3', mRNA sequence
Length = 767
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 11 aattcggcacgaggggaagc 30
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,646
Number of Sequences: 355925
Number of extensions: 90646
Number of successful extensions: 30692
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30597
Number of HSP's gapped (non-prelim): 95
length of query: 964
length of database: 217,277,237
effective HSP length: 19
effective length of query: 945
effective length of database: 210,514,662
effective search space: 198936355590
effective search space used: 198936355590
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)