BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.1
(712 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF391585.1|CF391585 RTDR3_9_D12.g1_A022 Loblolly pine ro... 145 3e-033
gb|DR684023.1|DR684023 EST1074100 Normalized pine embryo li... 145 3e-033
gb|DT631926.1|DT631926 EST1146857 Normalized pine embryo li... 145 3e-033
gb|AW497794.1|AW497794 PC02D01 Pine TriplEx pollen cone lib... 137 7e-031
gb|BM492088.1|BM492088 NXRV_020_E03_F NXRV (Nsf Xylem Root ... 137 7e-031
gb|BQ700812.1|BQ700812 NXRV111_F10_F NXRV (Nsf Xylem Root w... 137 7e-031
gb|CF388818.1|CF388818 RTDR2_15_G08.g1_A021 Loblolly pine r... 137 7e-031
gb|CF397754.1|CF397754 RTDS3_1_B02.g1_A022 Drought-stressed... 137 7e-031
gb|CF472745.1|CF472745 RTDS1_11_H01.g1_A015 Drought-stresse... 137 7e-031
gb|CF667020.1|CF667020 RTCNT1_27_E06.g1_A029 Root control P... 137 7e-031
gb|CF667188.1|CF667188 RTCNT1_28_E06.g1_A029 Root control P... 137 7e-031
gb|CF670179.1|CF670179 RTCNT1_48_C07.g1_A029 Root control P... 137 7e-031
gb|CF671154.1|CF671154 RTCNT1_55_D04.b1_A029 Root control P... 137 7e-031
gb|CF671787.1|CF671787 RTCNT1_59_F09.b1_A029 Root control P... 137 7e-031
gb|CO163653.1|CO163653 FLD1_43_A05.b1_A029 Root flooded Pin... 137 7e-031
gb|CO163731.1|CO163731 FLD1_43_A05.g1_A029 Root flooded Pin... 137 7e-031
gb|CO201236.1|CO201236 RTCNT2_4_A12.g1_A029 Root control 2 ... 137 7e-031
gb|DR012196.1|DR012196 HEAT1_10_H04.g1_A029 Root at 37 C fo... 137 7e-031
gb|DR023504.1|DR023504 STRS1_58_D02.b1_A034 Shoot tip pitch... 137 7e-031
gb|DR023575.1|DR023575 STRS1_58_D02.g1_A034 Shoot tip pitch... 137 7e-031
gb|DR023795.1|DR023795 STRS1_60_D03.b1_A034 Shoot tip pitch... 137 7e-031
gb|DR054611.1|DR054611 RTCA1_18_A09.g1_A029 Roots minus cal... 137 7e-031
gb|DR091562.1|DR091562 RTAL1_22_B02.g1_A029 Roots plus adde... 137 7e-031
gb|DR109868.1|DR109868 RTS1_6_B07.b1_A029 Roots minus sulfu... 137 7e-031
gb|DR109927.1|DR109927 RTS1_6_B07.g1_A029 Roots minus sulfu... 137 7e-031
gb|DR181798.1|DR181798 RTMNUT1_41_C09.b1_A029 Roots minus m... 137 7e-031
gb|DR181881.1|DR181881 RTMNUT1_41_C09.g1_A029 Roots minus m... 137 7e-031
gb|DR683857.1|DR683857 EST1073933 Normalized pine embryo li... 137 7e-031
gb|DT631830.1|DT631830 EST1146761 Normalized pine embryo li... 137 7e-031
gb|BM902756.1|BM902756 NXLV_073_G12_F NXLV (Nsf Xylem Late ... 133 1e-029
gb|AW042851.1|AW042851 ST26B10 Pine TriplEx shoot tip libra... 131 4e-029
gb|AW011604.1|AW011604 ST22G08 Pine TriplEx shoot tip libra... 129 2e-028
gb|AW043372.1|AW043372 ST32F01 Pine TriplEx shoot tip libra... 129 2e-028
gb|DR023876.1|DR023876 STRS1_60_D03.g1_A034 Shoot tip pitch... 129 2e-028
gb|DR387317.1|DR387317 RTHG1_21_A07.b1_A029 Roots plus adde... 129 2e-028
gb|CF397679.1|CF397679 RTDS3_1_B02.b2_A022 Drought-stressed... 96 2e-018
gb|CO200537.1|CO200537 GEO2_8_B10.b1_A032 Root gravitropism... 96 2e-018
gb|CO200619.1|CO200619 GEO2_8_B10.g1_A032 Root gravitropism... 96 2e-018
gb|CF670099.1|CF670099 RTCNT1_48_C07.b1_A029 Root control P... 88 6e-016
gb|CF666946.1|CF666946 RTCNT1_27_E06.b1_A029 Root control P... 62 3e-008
gb|CF667101.1|CF667101 RTCNT1_28_E06.b1_A029 Root control P... 62 3e-008
gb|CF472677.1|CF472677 RTDS1_11_H01.b1_A015 Drought-stresse... 54 8e-006
gb|CO369959.1|CO369959 RTK1_55_C01.g1_A029 Roots minus pota... 50 1e-004
gb|BM902702.1|BM902702 NXLV_057_H12_F NXLV (Nsf Xylem Late ... 44 0.008
gb|CF388746.1|CF388746 RTDR2_15_G08.b1_A021 Loblolly pine r... 44 0.008
gb|BM158601.1|BM158601 NXLV_036_G05_F NXLV (Nsf Xylem Late ... 40 0.12
gb|BX252709.1|BX252709 BX252709 Pinus pinaster differenciat... 38 0.48
gb|CF668427.1|CF668427 RTCNT1_36_A04.g1_A029 Root control P... 38 0.48
gb|CO363780.1|CO363780 RTK1_11_F07.g1_A029 Roots minus pota... 38 0.48
gb|CX652792.1|CX652792 COLD1_61_B07.g1_A029 Root cold Pinus... 38 0.48
gb|DR079200.1|DR079200 RTFEPL1_9_F02.g1_A029 Roots plus add... 38 0.48
gb|DR081026.1|DR081026 RTFEPL1_26_G11.g1_A029 Roots plus ad... 38 0.48
gb|DR081153.1|DR081153 RTFEPL1_27_F11.g1_A029 Roots plus ad... 38 0.48
gb|DR164209.1|DR164209 RTFE1_47_B09.g1_A029 Roots minus iro... 38 0.48
gb|DR179020.1|DR179020 RTMNUT1_15_B01.g1_A029 Roots minus m... 38 0.48
gb|DR693424.1|DR693424 EST1083512 Normalized pine embryo li... 38 0.48
gb|DT637962.1|DT637962 EST1152893 Normalized pine embryo li... 38 0.48
>gb|CF391585.1|CF391585 RTDR3_9_D12.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_9_D12_A022 5', mRNA
sequence
Length = 606
Score = 145 bits (73), Expect = 3e-033
Identities = 112/125 (89%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||| |||
Sbjct: 281 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtccc 340
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct: 341 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgcaaa 400
Query: 205 gaggt 209
|||||
Sbjct: 401 gaggt 405
>gb|DR684023.1|DR684023 EST1074100 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO06 3' end, mRNA sequence
Length = 824
Score = 145 bits (73), Expect = 3e-033
Identities = 112/125 (89%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||| |||
Sbjct: 286 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtccc 345
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct: 346 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgcaaa 405
Query: 205 gaggt 209
|||||
Sbjct: 406 gaggt 410
>gb|DT631926.1|DT631926 EST1146857 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFE41 3' end, mRNA sequence
Length = 832
Score = 145 bits (73), Expect = 3e-033
Identities = 112/125 (89%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||| |||
Sbjct: 294 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtccc 353
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct: 354 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgcaaa 413
Query: 205 gaggt 209
|||||
Sbjct: 414 gaggt 418
>gb|AW497794.1|AW497794 PC02D01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC02D01, mRNA sequence
Length = 518
Score = 137 bits (69), Expect = 7e-031
Identities = 102/113 (90%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||| |||
Sbjct: 299 tactacgtgggtcacaagggcaaattcggtcacgagtttctcgagttcgaattccgtccc 358
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgat 197
||||||||||||||||| || ||||| || |||||||||||||||||||||||
Sbjct: 359 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgat 411
>gb|BM492088.1|BM492088 NXRV_020_E03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_020_E03 5' similar to Arabidopsis thaliana
sequence At1g02140 Mago Nashi-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 442
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 116 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 175
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 176 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 235
Query: 205 gaggt 209
|||||
Sbjct: 236 gaggt 240
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcc 299
|||||||||||||| | ||||||||| |||||
Sbjct: 299 atgaaggaggacgataacaactggcctgagcc 330
>gb|BQ700812.1|BQ700812 NXRV111_F10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV111_F10 5' similar to Arabidopsis thaliana
sequence At1g02140 Mago Nashi-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 736
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 166 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 225
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 226 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 285
Query: 205 gaggt 209
|||||
Sbjct: 286 gaggt 290
Score = 77.8 bits (39), Expect = 6e-013
Identities = 162/203 (79%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 349 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 408
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 409 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 468
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 469 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 528
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 529 aagtgctttgtgttctctctcat 551
>gb|CF388818.1|CF388818 RTDR2_15_G08.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_15_G08_A021 5', mRNA
sequence
Length = 664
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 30 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 89
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 90 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 149
Query: 205 gaggt 209
|||||
Sbjct: 150 gaggt 154
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 213 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 272
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 273 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 332
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 333 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 392
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 393 aagtgctttgtattctctctcat 415
>gb|CF397754.1|CF397754 RTDS3_1_B02.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_B02_A022 5', mRNA sequence
Length = 721
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 178 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 237
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 238 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 297
Query: 205 gaggt 209
|||||
Sbjct: 298 gaggt 302
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 361 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 420
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 421 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 480
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 481 gtgcaaagtagcaaggatcccgaaggccttcggattttctattatcttgttcaggacctt 540
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 541 aagtgctttgtgttctctctcat 563
>gb|CF472745.1|CF472745 RTDS1_11_H01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_11_H01_A015 5', mRNA sequence
Length = 760
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 63 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 122
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 123 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 182
Query: 205 gaggt 209
|||||
Sbjct: 183 gaggt 187
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 246 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 305
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 306 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 365
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 366 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 425
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 426 aagtgctttgtattctctctcat 448
>gb|CF667020.1|CF667020 RTCNT1_27_E06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_E06_A029 5', mRNA sequence
Length = 828
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 117 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 176
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 177 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 236
Query: 205 gaggt 209
|||||
Sbjct: 237 gaggt 241
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 300 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 359
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 360 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 419
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 420 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 479
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 480 aagtgctttgtattctctctcat 502
>gb|CF667188.1|CF667188 RTCNT1_28_E06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_28_E06_A029 5', mRNA sequence
Length = 793
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 100 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 159
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 160 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 219
Query: 205 gaggt 209
|||||
Sbjct: 220 gaggt 224
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 283 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 342
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 343 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 402
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 403 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 462
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 463 aagtgctttgtattctctctcat 485
>gb|CF670179.1|CF670179 RTCNT1_48_C07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_C07_A029 5', mRNA sequence
Length = 857
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 179 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 238
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 239 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 298
Query: 205 gaggt 209
|||||
Sbjct: 299 gaggt 303
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 362 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 421
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 422 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 481
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 482 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 541
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 542 aagtgctttgtattctctctcat 564
>gb|CF671154.1|CF671154 RTCNT1_55_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_55_D04_A029 3', mRNA sequence
Length = 408
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 147 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 88
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 87 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 28
Query: 205 gaggt 209
|||||
Sbjct: 27 gaggt 23
>gb|CF671787.1|CF671787 RTCNT1_59_F09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_F09_A029 3', mRNA sequence
Length = 698
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 596 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 537
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 536 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 477
Query: 205 gaggt 209
|||||
Sbjct: 476 gaggt 472
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 413 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 354
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 353 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 294
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 293 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 234
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 233 aagtgctttgtattctctctcat 211
>gb|CO163653.1|CO163653 FLD1_43_A05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_43_A05_A029 3', mRNA sequence
Length = 920
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 237 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 296
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 297 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 356
Query: 205 gaggt 209
|||||
Sbjct: 357 gaggt 361
Score = 77.8 bits (39), Expect = 6e-013
Identities = 162/203 (79%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 420 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 479
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 480 atagttatggggaacgagcatatttcctttactacttccaatataggatctcttgtcgat 539
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 540 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 599
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 600 aagtgctttgtgttctctctcat 622
>gb|CO163731.1|CO163731 FLD1_43_A05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_43_A05_A029 5', mRNA sequence
Length = 884
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 220 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 279
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 280 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 339
Query: 205 gaggt 209
|||||
Sbjct: 340 gaggt 344
Score = 77.8 bits (39), Expect = 6e-013
Identities = 162/203 (79%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 403 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 462
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 463 atagttatggggaacgagcatatttcctttactacttccaatataggatctcttgtcgat 522
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 523 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 582
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 583 aagtgctttgtgttctctctcat 605
>gb|CO201236.1|CO201236 RTCNT2_4_A12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_A12_A029 5', mRNA sequence
Length = 687
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 75 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 134
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 135 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 194
Query: 205 gaggt 209
|||||
Sbjct: 195 gaggt 199
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 258 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 317
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 318 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 377
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 378 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 437
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 438 aagtgctttgtattctctctcat 460
>gb|DR012196.1|DR012196 HEAT1_10_H04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_10_H04_A029 5', mRNA sequence
Length = 493
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 182 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 241
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 242 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaat 301
Query: 205 gaggt 209
|||||
Sbjct: 302 gaggt 306
Score = 44.1 bits (22), Expect = 0.008
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 365 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 424
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 425 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 484
Query: 388 gt 389
||
Sbjct: 485 gt 486
>gb|DR023504.1|DR023504 STRS1_58_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_D02_A034 3', mRNA sequence
Length = 854
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 87 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 146
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 147 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 206
Query: 205 gaggt 209
|||||
Sbjct: 207 gaggt 211
Score = 77.8 bits (39), Expect = 6e-013
Identities = 162/203 (79%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 270 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 329
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 330 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 389
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 390 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 449
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 450 aagtgctttgtgttctctctcat 472
>gb|DR023575.1|DR023575 STRS1_58_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_D02_A034 5', mRNA sequence
Length = 645
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 168 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 227
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 228 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 287
Query: 205 gaggt 209
|||||
Sbjct: 288 gaggt 292
Score = 77.8 bits (39), Expect = 6e-013
Identities = 162/203 (79%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 351 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 410
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 411 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 470
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 471 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 530
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 531 aagtgctttgtgttctctctcat 553
>gb|DR023795.1|DR023795 STRS1_60_D03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_D03_A034 3', mRNA sequence
Length = 827
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 61 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 120
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 121 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 180
Query: 205 gaggt 209
|||||
Sbjct: 181 gaggt 185
Score = 77.8 bits (39), Expect = 6e-013
Identities = 162/203 (79%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 244 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 303
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 304 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 363
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 364 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 423
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 424 aagtgctttgtgttctctctcat 446
>gb|DR054611.1|DR054611 RTCA1_18_A09.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_A09_A029 5', mRNA sequence
Length = 780
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 601 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 542
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 541 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 482
Query: 205 gaggt 209
|||||
Sbjct: 481 gaggt 477
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 418 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 359
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 358 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 299
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 298 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 239
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 238 aagtgctttgtattctctctcat 216
>gb|DR091562.1|DR091562 RTAL1_22_B02.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_B02_A029 5', mRNA sequence
Length = 784
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 653 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 594
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 593 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 534
Query: 205 gaggt 209
|||||
Sbjct: 533 gaggt 529
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 470 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 411
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 410 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 351
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 350 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 291
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 290 aagtgctttgtattctctctcat 268
>gb|DR109868.1|DR109868 RTS1_6_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_6_B07_A029 3', mRNA sequence
Length = 409
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 292 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 233
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 232 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 173
Query: 205 gaggt 209
|||||
Sbjct: 172 gaggt 168
Score = 42.1 bits (21), Expect = 0.030
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 109 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 50
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaa 368
|| || ||||| |||||||| ||||| || || ||||||||
Sbjct: 49 atagttatggggaacgagcatatttcctttactacttccaa 9
>gb|DR109927.1|DR109927 RTS1_6_B07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_6_B07_A029 5', mRNA sequence
Length = 497
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 223 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 282
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 283 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 342
Query: 205 gaggt 209
|||||
Sbjct: 343 gaggt 347
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcc 299
|||||||||||||| | ||||||||| |||||
Sbjct: 406 atgaaggaggacgataacaactggcctgagcc 437
>gb|DR181798.1|DR181798 RTMNUT1_41_C09.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_41_C09_A029 3', mRNA sequence
Length = 757
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 646 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 587
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 586 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 527
Query: 205 gaggt 209
|||||
Sbjct: 526 gaggt 522
Score = 77.8 bits (39), Expect = 6e-013
Identities = 162/203 (79%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 463 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 404
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 403 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 344
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 343 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 284
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 283 aagtgctttgtgttctctctcat 261
>gb|DR181881.1|DR181881 RTMNUT1_41_C09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_41_C09_A029 5', mRNA sequence
Length = 725
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 617 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 558
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 557 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 498
Query: 205 gaggt 209
|||||
Sbjct: 497 gaggt 493
Score = 77.8 bits (39), Expect = 6e-013
Identities = 162/203 (79%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 434 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 375
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 374 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 315
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 314 gtgcaaagtagcaaggatcccgaaggcctccggattttctactatcttgttcaggacctc 255
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 254 aagtgctttgtgttctctctcat 232
>gb|DR683857.1|DR683857 EST1073933 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAM11 3' end, mRNA sequence
Length = 837
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||| |||
Sbjct: 202 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtccc 261
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||| ||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct: 262 gacagcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgcaaa 321
Query: 205 gaggt 209
|||||
Sbjct: 322 gaggt 326
>gb|DT631830.1|DT631830 EST1146761 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD25 3' end, mRNA sequence
Length = 749
Score = 137 bits (69), Expect = 7e-031
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||| |||
Sbjct: 209 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagttcgaattccgtccc 268
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||| ||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct: 269 gacagcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgattcgcaaa 328
Query: 205 gaggt 209
|||||
Sbjct: 329 gaggt 333
>gb|BM902756.1|BM902756 NXLV_073_G12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_073_G12 5' similar to Arabidopsis thaliana
sequence At1g02140 Mago Nashi-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 206
Score = 133 bits (67), Expect = 1e-029
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 70 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 129
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaa 203
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 130 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaa 188
>gb|AW042851.1|AW042851 ST26B10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST26B10, mRNA sequence
Length = 526
Score = 131 bits (66), Expect = 4e-029
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 191 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 250
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||| ||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 251 gacggnaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 310
Query: 205 gaggt 209
|||||
Sbjct: 311 gaggt 315
>gb|AW011604.1|AW011604 ST22G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22G08, mRNA sequence
Length = 600
Score = 129 bits (65), Expect = 2e-028
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| ||| |||| |||||||| || | || |||
Sbjct: 208 tactacgtgggtcacaagggcaaattcggccacaagtttctcgagtttgaatttcgtccc 267
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 268 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 327
Query: 205 gaggt 209
|||||
Sbjct: 328 gaggt 332
Score = 42.1 bits (21), Expect = 0.030
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 391 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 450
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaa 368
|| || ||||| |||||||| ||||| || || ||||||||
Sbjct: 451 atagttatggggaacgagcatatttcctttactacttccaa 491
>gb|AW043372.1|AW043372 ST32F01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32F01, mRNA sequence
Length = 600
Score = 129 bits (65), Expect = 2e-028
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 137 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 196
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||||
Sbjct: 197 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacactatgatccgcaaa 256
Query: 205 gaggt 209
|||||
Sbjct: 257 gaggt 261
Score = 52.0 bits (26), Expect = 3e-005
Identities = 154/197 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 320 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 379
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 380 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 439
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||| ||||| ||||| || ||||| || || ||
Sbjct: 440 gtgcaaagtagcaaggatcccgaaggccttcggattttctattatcttgttcangacctt 499
Query: 448 aagtgtttcgtgttctc 464
||||| || ||||||||
Sbjct: 500 aagtgctttgtgttctc 516
>gb|DR023876.1|DR023876 STRS1_60_D03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_D03_A034 5', mRNA sequence
Length = 301
Score = 129 bits (65), Expect = 2e-028
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| ||| |||| |||||||| || | || |||
Sbjct: 155 tactacgtgggtcacaagggcaaattcggccactagtttctcgagtttgaatttcgtccc 214
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 215 gacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 274
Query: 205 gaggt 209
|||||
Sbjct: 275 gaggt 279
>gb|DR387317.1|DR387317 RTHG1_21_A07.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_21_A07_A029 3', mRNA sequence
Length = 696
Score = 129 bits (65), Expect = 2e-028
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 85 tactacgtgggacacaagggcaagttcgggcacgagttcctcgagttcgagctccgcccc 144
||||||||||| ||||||||||| ||||| |||||||| |||||||| || | || |||
Sbjct: 82 tactacgtgggtcacaagggcaaattcggccacgagtttctcgagtttgaatttcgtccc 141
Query: 145 gacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaag 204
||||||||| ||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct: 142 gacggcaagttccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaa 201
Query: 205 gaggt 209
|||||
Sbjct: 202 gaggt 206
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 265 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 324
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 325 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 384
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 385 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 444
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 445 aagtgctttgtattctctctcat 467
>gb|CF397679.1|CF397679 RTDS3_1_B02.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_B02_A022 3', mRNA sequence
Length = 558
Score = 95.6 bits (48), Expect = 2e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 142 cccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgc 201
|||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 2 cccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgc 61
Query: 202 aaggaggt 209
|| |||||
Sbjct: 62 aaagaggt 69
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 128 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 187
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 188 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 247
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||| ||||| ||||| || ||||| ||||| ||
Sbjct: 248 gtgcaaagtagcaaggatcccgaaggccttcggattttctattatcttgttcaggacctt 307
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || |||||||| |||||
Sbjct: 308 aagtgctttgtgttctctctcat 330
>gb|CO200537.1|CO200537 GEO2_8_B10.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_B10_A032 3', mRNA sequence
Length = 426
Score = 95.6 bits (48), Expect = 2e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 142 cccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgc 201
|||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 414 cccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgc 355
Query: 202 aaggaggt 209
|| |||||
Sbjct: 354 aaagaggt 347
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 288 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 229
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 228 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 169
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 168 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 109
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 108 aagtgctttgtattctctctcat 86
>gb|CO200619.1|CO200619 GEO2_8_B10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_B10_A032 5', mRNA sequence
Length = 398
Score = 95.6 bits (48), Expect = 2e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 142 cccgacggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgc 201
|||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct: 386 cccgacggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgc 327
Query: 202 aaggaggt 209
|| |||||
Sbjct: 326 aaagaggt 319
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 260 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 201
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 200 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 141
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 140 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 81
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 80 aagtgctttgtattctctctcat 58
>gb|CF670099.1|CF670099 RTCNT1_48_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_C07_A029 3', mRNA sequence
Length = 615
Score = 87.7 bits (44), Expect = 6e-016
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 146 acggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaagg 205
|||||||||||||||| || ||||| || ||||||||||||||||||||||||||||| |
Sbjct: 1 acggcaagctccgctatgcaaacaattcgaactacaagaacgacaccatgatccgcaaag 60
Query: 206 aggt 209
||||
Sbjct: 61 aggt 64
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 123 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 182
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 183 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 242
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 243 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 302
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 303 aagtgctttgtattctctctcat 325
>gb|CF666946.1|CF666946 RTCNT1_27_E06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_E06_A029 3', mRNA sequence
Length = 686
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 69 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 128
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 129 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 188
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 189 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 248
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 249 aagtgctttgtattctctctcat 271
>gb|CF667101.1|CF667101 RTCNT1_28_E06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_28_E06_A029 3', mRNA sequence
Length = 688
Score = 61.9 bits (31), Expect = 3e-008
Identities = 160/203 (78%)
Strand = Plus / Plus
Query: 268 atgaaggaggacgacagcaactggcccgagcccgaccgcatcggccgccaggagctcgag 327
|||||||||||||| | ||||||||| ||||| || | | || || |||||||| ||
Sbjct: 71 atgaaggaggacgataacaactggcctgagccggatagggttgggcgtcaggagctggaa 130
Query: 328 atcgtcatgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgat 387
|| || ||||| |||||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 131 atagttatggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgat 190
Query: 388 gtccagtccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctg 447
|| || |||||||| || || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 191 gtgcaaagtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctc 250
Query: 448 aagtgtttcgtgttctcgctcat 470
||||| || || ||||| |||||
Sbjct: 251 aagtgctttgtattctctctcat 273
>gb|CF472677.1|CF472677 RTDS1_11_H01.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_11_H01_A015 3', mRNA sequence
Length = 574
Score = 54.0 bits (27), Expect = 8e-006
Identities = 123/155 (79%)
Strand = Plus / Plus
Query: 316 caggagctcgagatcgtcatgggcaacgagcacatttcattcaccacttccaagatcggc 375
|||||||| || || || ||||| |||||||| ||||| || || |||||||| || ||
Sbjct: 18 caggagctggaaatagttatggggaacgagcatatttcctttactacttccaaaatagga 77
Query: 376 tccctcgtcgatgtccagtccagcaaggacccggagggcctccggatcttctactacctt 435
|| || |||||||| || |||||||| || || ||||||||||| ||||| || |||
Sbjct: 78 tctcttgtcgatgtgcaaagtagcaaggatcccgaaggcctccggattttctattatctt 137
Query: 436 gtccaggatctgaagtgtttcgtgttctcgctcat 470
|| ||||| || ||||| || || ||||| |||||
Sbjct: 138 gttcaggacctcaagtgctttgtattctctctcat 172
>gb|CO369959.1|CO369959 RTK1_55_C01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_55_C01_A029 5', mRNA sequence
Length = 490
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 334 atgggcaacgagcacatttcattcaccacttccaagatcggctccctcgtcgatgtccag 393
||||| |||||||| ||||| || || |||||||| || || || || |||||||| ||
Sbjct: 40 atggggaacgagcatatttcctttactacttccaaaataggatctcttgtcgatgtgcaa 99
Query: 394 tccagcaaggacccggagggcctccggatcttctactaccttgtccaggatctgaagtgt 453
|||||||| || || ||||||||||| ||||| || ||||| ||||| || |||||
Sbjct: 100 agtagcaaggatcccgaaggcctccggattttctattatcttgttcaggacctcaagtgc 159
Query: 454 ttcgtgttctcgctcat 470
|| || ||||| |||||
Sbjct: 160 tttgtattctctctcat 176
>gb|BM902702.1|BM902702 NXLV_057_H12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_057_H12 5' similar to Arabidopsis thaliana
sequence At1g02140 Mago Nashi-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 218
Score = 44.1 bits (22), Expect = 0.008
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 397 agcaaggacccggagggcctccggatcttctactaccttgtccaggatctgaagtgtttc 456
|||||||| || || ||||||||||| ||||| || ||||| ||||| || ||||| ||
Sbjct: 79 agcaaggatcccgaaggcctccggattttctattatcttgttcaggacctcaagtgcttt 138
Query: 457 gtgttctcgctcat 470
|| ||||| |||||
Sbjct: 139 gtattctctctcat 152
>gb|CF388746.1|CF388746 RTDR2_15_G08.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_15_G08_A021 3', mRNA
sequence
Length = 560
Score = 44.1 bits (22), Expect = 0.008
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 397 agcaaggacccggagggcctccggatcttctactaccttgtccaggatctgaagtgtttc 456
|||||||| || || ||||||||||| ||||| || ||||| ||||| || ||||| ||
Sbjct: 34 agcaaggatcccgaaggcctccggattttctattatcttgttcaggacctcaagtgcttt 93
Query: 457 gtgttctcgctcat 470
|| ||||| |||||
Sbjct: 94 gtattctctctcat 107
>gb|BM158601.1|BM158601 NXLV_036_G05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_036_G05 5' similar to Arabidopsis thaliana
sequence At1g02140 Mago Nashi-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 418
Score = 40.1 bits (20), Expect = 0.12
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 397 agcaaggacccggagggcctccggatcttctactaccttgtccaggatctgaagtg 452
|||||||| || || ||||||||||| ||||| || ||||| ||||| || |||||
Sbjct: 30 agcaaggatcccgaaggcctccggattttctattatcttgttcaggacctcaagtg 85
>gb|BX252709.1|BX252709 BX252709 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069D11 similar to TRIOSEPHOSPHATE
ISOMERASE, mRNA sequence
Length = 675
Score = 38.2 bits (19), Expect = 0.48
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 581 aagatgatgttgatattgt 599
|||||||||||||||||||
Sbjct: 384 aagatgatgttgatattgt 402
>gb|CF668427.1|CF668427 RTCNT1_36_A04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_A04_A029 5', mRNA sequence
Length = 708
Score = 38.2 bits (19), Expect = 0.48
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 331 gtcatgggcaacgagcacatttc 353
||||||||||||||| |||||||
Sbjct: 366 gtcatgggcaacgagaacatttc 388
>gb|CO363780.1|CO363780 RTK1_11_F07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_F07_A029 5', mRNA sequence
Length = 785
Score = 38.2 bits (19), Expect = 0.48
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 331 gtcatgggcaacgagcacatttc 353
||||||||||||||| |||||||
Sbjct: 437 gtcatgggcaacgagaacatttc 459
>gb|CX652792.1|CX652792 COLD1_61_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_B07_A029 5', mRNA sequence
Length = 755
Score = 38.2 bits (19), Expect = 0.48
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 331 gtcatgggcaacgagcacatttc 353
||||||||||||||| |||||||
Sbjct: 474 gtcatgggcaacgagaacatttc 496
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,744
Number of Sequences: 355925
Number of extensions: 71744
Number of successful extensions: 18521
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18407
Number of HSP's gapped (non-prelim): 114
length of query: 712
length of database: 217,277,237
effective HSP length: 19
effective length of query: 693
effective length of database: 210,514,662
effective search space: 145886660766
effective search space used: 145886660766
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)