BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.2
(4065 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 161 3e-037
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 161 3e-037
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 153 7e-035
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 153 7e-035
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 151 3e-034
gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus ni... 135 2e-029
gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added... 129 1e-027
dbj|BD235986.1| Materials and method for modification of pl... 127 4e-027
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 127 4e-027
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 127 4e-027
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 127 4e-027
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 127 4e-027
gb|AW985238.1|AW985238 NXNV_132_G11_F Nsf Xylem Normal wood... 121 2e-025
gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus ad... 121 2e-025
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 121 2e-025
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 119 9e-025
gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Plani... 117 4e-024
dbj|BD236020.1| Materials and method for modification of pl... 117 4e-024
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 117 4e-024
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 117 4e-024
gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo li... 115 1e-023
gb|DR162195.1|DR162195 RTFE1_16_G12.b1_A029 Roots minus iro... 113 6e-023
gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Plani... 109 9e-022
gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus ... 107 4e-021
gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late w... 107 4e-021
gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control P... 107 4e-021
gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 ... 107 4e-021
gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus pota... 107 4e-021
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 107 4e-021
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 107 4e-021
gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulf... 107 4e-021
gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo li... 107 4e-021
dbj|BD235989.1| Materials and method for modification of pl... 107 4e-021
gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciat... 105 1e-020
gb|DR101934.1|DR101934 STRR1_76_G04.g1_A033 Stem Response R... 105 1e-020
gb|BE657157.1|BE657157 NXCI_064_G04_F NXCI (Nsf Xylem Compr... 103 6e-020
gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compr... 101 2e-019
gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood... 100 9e-019
gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered lo... 100 9e-019
gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered lo... 100 9e-019
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 100 9e-019
gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus mag... 100 9e-019
gb|BE187012.1|BE187012 NXNV_157_H10_F Nsf Xylem Normal wood... 96 1e-017
gb|BF186171.1|BF186171 NXCI_133_H05_F NXCI (Nsf Xylem Compr... 96 1e-017
gb|BF517368.1|BF517368 NXSI_013_F11_F NXSI (Nsf Xylem Side ... 96 1e-017
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 96 1e-017
gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root w... 92 2e-016
gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Plani... 92 2e-016
gb|AA556746.1|AA556746 588 Loblolly pine NA Pinus taeda cDN... 88 3e-015
gb|AW010875.1|AW010875 ST12E01 Pine TriplEx shoot tip libra... 86 1e-014
gb|BQ701215.1|BQ701215 NXSI_023_H05_F NXSI (Nsf Xylem Side ... 84 5e-014
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 84 5e-014
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 82 2e-013
gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus adde... 82 2e-013
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 82 2e-013
gb|BV079715.1| Pp_CesA3 Pinus pinaster megagametophytes Pin... 80 8e-013
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 78 3e-012
gb|AW042872.1|AW042872 ST26D09 Pine TriplEx shoot tip libra... 76 1e-011
gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pin... 74 5e-011
gb|BV079717.1| Pp_CesA7 Pinus pinaster megagametophytes Pin... 74 5e-011
gb|AW056552.1|AW056552 ST51E06 Pine TriplEx shoot tip libra... 72 2e-010
gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clon... 72 2e-010
gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciat... 72 2e-010
gb|BG275715.1|BG275715 NXSI_145_B01_F NXSI (Nsf Xylem Side ... 70 8e-010
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 70 8e-010
gb|AY764673.1|AY764673S1 Pinus taeda isolate 11 cellulose s... 70 8e-010
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 70 8e-010
gb|AY764675.1|AY764675S1 Pinus taeda isolate 16 cellulose s... 70 8e-010
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 70 8e-010
gb|AY764677.1|AY764677S1 Pinus taeda isolate 25 cellulose s... 70 8e-010
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 70 8e-010
gb|AY764679.1|AY764679S1 Pinus taeda isolate 7 cellulose sy... 70 8e-010
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 70 8e-010
gb|AY764681.1|AY764681S1 Pinus taeda isolate 6 cellulose sy... 70 8e-010
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 70 8e-010
gb|AY764683.1|AY764683S1 Pinus taeda isolate 4 cellulose sy... 70 8e-010
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 70 8e-010
gb|AY764685.1|AY764685S1 Pinus taeda isolate 26 cellulose s... 70 8e-010
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 70 8e-010
gb|AY764687.1|AY764687S1 Pinus taeda isolate 9 cellulose sy... 70 8e-010
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 70 8e-010
gb|AY764689.1|AY764689S1 Pinus taeda isolate 23 cellulose s... 70 8e-010
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 70 8e-010
gb|AY764691.1|AY764691S1 Pinus taeda isolate 13 cellulose s... 70 8e-010
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 70 8e-010
gb|AY764693.1|AY764693S1 Pinus taeda isolate 30 cellulose s... 70 8e-010
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 70 8e-010
gb|AY764695.1|AY764695S1 Pinus taeda isolate 22 cellulose s... 70 8e-010
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 70 8e-010
gb|AY764697.1|AY764697S1 Pinus taeda isolate 32 cellulose s... 70 8e-010
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 70 8e-010
gb|AY764699.1|AY764699S1 Pinus taeda isolate 18 cellulose s... 70 8e-010
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 70 8e-010
gb|AY764701.1|AY764701S1 Pinus taeda isolate 10 cellulose s... 70 8e-010
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 70 8e-010
gb|AY764703.1|AY764703S1 Pinus taeda isolate 14 cellulose s... 70 8e-010
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 70 8e-010
gb|AY764705.1|AY764705S1 Pinus taeda isolate 21 cellulose s... 70 8e-010
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 70 8e-010
gb|AY764707.1|AY764707S1 Pinus taeda isolate 31 cellulose s... 70 8e-010
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 70 8e-010
gb|AY764709.1|AY764709S1 Pinus taeda isolate 5 cellulose sy... 70 8e-010
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 70 8e-010
gb|AY764711.1|AY764711S1 Pinus taeda isolate 2 cellulose sy... 70 8e-010
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 70 8e-010
gb|AY764713.1|AY764713S1 Pinus taeda isolate 3 cellulose sy... 70 8e-010
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 70 8e-010
gb|AY764715.1|AY764715S1 Pinus taeda isolate 19 cellulose s... 70 8e-010
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 70 8e-010
gb|AY764717.1|AY764717S1 Pinus taeda isolate 28 cellulose s... 70 8e-010
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 70 8e-010
gb|AY764719.1|AY764719S1 Pinus taeda isolate 17 cellulose s... 70 8e-010
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 70 8e-010
gb|AY764721.1|AY764721S1 Pinus taeda isolate 8 cellulose sy... 70 8e-010
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 70 8e-010
gb|AY764723.1|AY764723S1 Pinus taeda isolate 15 cellulose s... 70 8e-010
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 70 8e-010
gb|AY764725.1|AY764725S1 Pinus taeda isolate 1 cellulose sy... 70 8e-010
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 70 8e-010
gb|AY764727.1|AY764727S1 Pinus taeda isolate 29 cellulose s... 70 8e-010
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 70 8e-010
gb|AY764729.1|AY764729S1 Pinus taeda isolate 20 cellulose s... 70 8e-010
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 70 8e-010
gb|AY764731.1|AY764731S1 Pinus taeda isolate 27 cellulose s... 70 8e-010
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 70 8e-010
gb|AY764733.1|AY764733S1 Pinus taeda isolate 12 cellulose s... 70 8e-010
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 70 8e-010
gb|AY764735.1|AY764735S1 Pinus taeda isolate 24 cellulose s... 70 8e-010
gb|BF778499.1|BF778499 NXSI_085_D12_F NXSI (Nsf Xylem Side ... 68 3e-009
gb|CD016846.1|CD016846 NXCI_064_H04_F NXCI (Nsf Xylem Compr... 68 3e-009
gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch... 68 3e-009
gb|AW985306.1|AW985306 NXNV_135_F04_F Nsf Xylem Normal wood... 66 1e-008
gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered lo... 66 1e-008
gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control P... 66 1e-008
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 66 1e-008
gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch... 66 1e-008
gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response R... 66 1e-008
gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response R... 66 1e-008
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 66 1e-008
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 66 1e-008
gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root ... 64 5e-008
gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip libra... 60 8e-007
gb|DR169086.1|DR169086 RTPHOS1_30_A02.b1_A029 Roots minus p... 60 8e-007
gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose s... 60 8e-007
gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA... 58 3e-006
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 58 3e-006
gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciat... 58 3e-006
gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side ... 58 3e-006
gb|CD022890.1|CD022890 NXPV_089_B01_F NXPV (Nsf Xylem Plani... 58 3e-006
gb|AW290811.1|AW290811 NXNV047B05F Nsf Xylem Normal wood Ve... 56 1e-005
gb|CD027470.1|CD027470 NXNV047B05 Nsf Xylem Normal wood Ver... 56 1e-005
gb|AW698152.1|AW698152 NXNV_073_G04_F Nsf Xylem Normal wood... 54 5e-005
gb|BE431393.1|BE431393 NXNV_181_F12_F Nsf Xylem Normal wood... 54 5e-005
gb|BE762150.1|BE762150 NXCI_082_D03_F NXCI (Nsf Xylem Compr... 54 5e-005
gb|BF169694.1|BF169694 NXCI_126_F04_F NXCI (Nsf Xylem Compr... 54 5e-005
gb|CD019985.1|CD019985 NXNV008B03 Nsf Xylem Normal wood Ver... 54 5e-005
gb|CD024597.1|CD024597 NXRV056_C03_F NXRV (Nsf Xylem Root w... 54 5e-005
gb|CD027901.1|CD027901 NXNV_073_G04 Nsf Xylem Normal wood V... 54 5e-005
gb|DR118030.1|DR118030 RTMG1_10_E11.g1_A029 Roots minus mag... 54 5e-005
gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iro... 54 5e-005
gb|BV102457.1| AY531556.SNP2 Pinus pinaster megagametophyte... 54 5e-005
gb|AY531556.1| Pinus pinaster putative cellulose synthase g... 54 5e-005
gb|BE209216.1|BE209216 NXNV_147_D10_F Nsf Xylem Normal wood... 52 2e-004
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Plani... 52 2e-004
gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Plani... 52 2e-004
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus ni... 52 2e-004
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 52 2e-004
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 52 2e-004
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 52 2e-004
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 52 2e-004
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 52 2e-004
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 52 2e-004
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 52 2e-004
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 52 2e-004
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 52 2e-004
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 52 2e-004
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 52 2e-004
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 52 2e-004
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 52 2e-004
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 52 2e-004
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 52 2e-004
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 52 2e-004
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 52 2e-004
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 52 2e-004
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 52 2e-004
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 52 2e-004
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 52 2e-004
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 52 2e-004
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 52 2e-004
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 52 2e-004
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 52 2e-004
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 52 2e-004
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 52 2e-004
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 52 2e-004
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 52 2e-004
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 52 2e-004
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 52 2e-004
gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood... 50 7e-004
gb|BQ654688.1|BQ654688 NXRV084_D02_F NXRV (Nsf Xylem Root w... 50 7e-004
gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Ve... 48 0.003
gb|AL750979.1|AL750979 AL750979 RS Pinus pinaster cDNA clon... 48 0.003
gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compr... 48 0.003
gb|BF778216.1|BF778216 NXSI_083_G10_F NXSI (Nsf Xylem Side ... 48 0.003
gb|BG275945.1|BG275945 NXSI_149_G12_F NXSI (Nsf Xylem Side ... 48 0.003
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 48 0.003
gb|CD022200.1|CD022200 NXPV_024_F02_F NXPV (Nsf Xylem Plani... 48 0.003
gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Ver... 48 0.003
gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine r... 48 0.003
gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo li... 48 0.003
gb|BF610612.1|BF610612 NXSI_060_G02_F NXSI (Nsf Xylem Side ... 46 0.011
gb|BQ701506.1|BQ701506 NXSI_065_D05_F NXSI (Nsf Xylem Side ... 46 0.011
gb|CD017587.1|CD017587 NXCI_129_A12_F NXCI (Nsf Xylem Compr... 46 0.011
gb|CD017765.1|CD017765 NXCI_131_C08_F NXCI (Nsf Xylem Compr... 46 0.011
gb|DR695127.1|DR695127 EST1085220 Normalized pine embryo li... 46 0.011
gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciat... 44 0.045
gb|BE451860.1|BE451860 NXCI_004_B09_F NXCI (Nsf Xylem Compr... 44 0.045
gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root w... 44 0.045
gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root w... 44 0.045
gb|BX682482.1|BX682482 BX682482 Pinus pinaster differenciat... 44 0.045
gb|BX682490.1|BX682490 BX682490 Pinus pinaster differenciat... 44 0.045
gb|BG832808.1|BG832808 NXPV_080_C10_F NXPV (Nsf Xylem Plani... 42 0.18
gb|BM428045.1|BM428045 NXRV_008_A09_F NXRV (Nsf Xylem Root ... 42 0.18
gb|CF476470.1|CF476470 RTWW3_1_C10.g1_A022 Well-watered lob... 42 0.18
gb|CF668221.1|CF668221 RTCNT1_35_D11.b1_A029 Root control P... 42 0.18
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 42 0.18
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 42 0.18
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 42 0.18
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 42 0.18
>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM78 3' end, mRNA sequence
Length = 740
Score = 161 bits (81), Expect = 3e-037
Identities = 372/469 (79%)
Strand = Plus / Minus
Query: 718 ggatcaatccgaacccaaaggagcgagaagattgaagccagcagaatggaccagacgatg 777
|||| |||||||||||| ||||| || || || || || || ||||| ||||| || ||
Sbjct: 658 ggattaatccgaacccataggagagaaaaaatggatgcgagtagaatagaccacacaata 599
Query: 778 acaatcgttggtgtcctgttttgccttccaaccaaacctttgagaaagggataaagatgg 837
||||| || ||||||| ||| |||||||| | ||||||||| || || ||||| | |||
Sbjct: 598 acaattgtgggtgtccggttctgccttcccatcaaaccttttaggaaaggatacaaatgc 539
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatgactcatatccg 897
||||||||||| || ||||| || || || || || || ||||||||||||||||||||
Sbjct: 538 acaatcacccagaaggcaaaaaaaagttttccgaacagagggccccatgactcatatcca 479
Query: 898 ttattgatcgcatttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtg 957
||||| || ||||| || || ||||| || || ||||| | ||||| || ||| | ||
Sbjct: 478 ttattaatggcattagataccccagcaacaactccaattaggttcactataagtagtgtt 419
Query: 958 gtaggaggtatcaataaggtagtccatttgaatgtatatagctctgagaactcctcatca 1017
|| || || ||||| | ||| ||||| || |||| |||||||||||| || || ||||||
Sbjct: 418 gtggggggaatcaacagggttgtccacttaaatgcatatagctctgaaaaatcatcatca 359
Query: 1018 tctccaccctttgatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagt 1077
|| ||| | ||||||||||| || || |||||||||||||||| | || || | |
Sbjct: 358 tccccagcttttgatgtcacagtaaaatttgtatcaacaccagcaagaactttcaacaac 299
Query: 1078 ccctggaacacagcaaagaggtgtgaggacacacctccaatgacccagaactgctcattc 1137
|| ||||| |||||||| | |||| |||||||||||||| ||||| || || || ||
Sbjct: 298 ccttggaaaacagcaaacaaatgtgcagacacacctccaatcacccaaaattgttcgttt 239
Query: 1138 ctccaccagtcatcaattccaacaccactccatctcatttctaggatgc 1186
|||||||||||||||||| |||||||||||| | ||| ||||||||||
Sbjct: 238 ctccaccagtcatcaattggaacaccactccaccgcatctctaggatgc 190
>gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFZ11 3' end, mRNA sequence
Length = 688
Score = 161 bits (81), Expect = 3e-037
Identities = 372/469 (79%)
Strand = Plus / Minus
Query: 718 ggatcaatccgaacccaaaggagcgagaagattgaagccagcagaatggaccagacgatg 777
|||| |||||||||||| ||||| || || || || || || ||||| ||||| || ||
Sbjct: 666 ggattaatccgaacccataggagagaaaaaatggatgcgagtagaatagaccacacaata 607
Query: 778 acaatcgttggtgtcctgttttgccttccaaccaaacctttgagaaagggataaagatgg 837
||||| || ||||||| ||| |||||||| | ||||||||| || || ||||| | |||
Sbjct: 606 acaattgtgggtgtccggttctgccttcccatcaaaccttttaggaaaggatacaaatgc 547
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatgactcatatccg 897
||||||||||| || ||||| || || || || || || ||||||||||||||||||||
Sbjct: 546 acaatcacccagaaggcaaaaaaaagttttccgaacagagggccccatgactcatatcca 487
Query: 898 ttattgatcgcatttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtg 957
||||| || ||||| || || ||||| || || ||||| | ||||| || ||| | ||
Sbjct: 486 ttattaatggcattagataccccagcaacaactccaattaggttcactataagtagtgtt 427
Query: 958 gtaggaggtatcaataaggtagtccatttgaatgtatatagctctgagaactcctcatca 1017
|| || || ||||| | ||| ||||| || |||| |||||||||||| || || ||||||
Sbjct: 426 gtggggggaatcaacagggttgtccacttaaatgcatatagctctgaaaaatcatcatca 367
Query: 1018 tctccaccctttgatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagt 1077
|| ||| | ||||||||||| || || |||||||||||||||| | || || | |
Sbjct: 366 tccccagcttttgatgtcacagtaaaatttgtatcaacaccagcaagaactttcaacaac 307
Query: 1078 ccctggaacacagcaaagaggtgtgaggacacacctccaatgacccagaactgctcattc 1137
|| ||||| |||||||| | |||| |||||||||||||| ||||| || || || ||
Sbjct: 306 ccttggaaaacagcaaacaaatgtgcagacacacctccaatcacccaaaattgttcgttt 247
Query: 1138 ctccaccagtcatcaattccaacaccactccatctcatttctaggatgc 1186
|||||||||||||||||| |||||||||||| | ||| ||||||||||
Sbjct: 246 ctccaccagtcatcaattggaacaccactccaccgcatctctaggatgc 198
>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY38 3' end, mRNA sequence
Length = 859
Score = 153 bits (77), Expect = 7e-035
Identities = 371/469 (79%)
Strand = Plus / Minus
Query: 718 ggatcaatccgaacccaaaggagcgagaagattgaagccagcagaatggaccagacgatg 777
|||| |||||||||||| ||||| || || || || || || ||||| ||||| || ||
Sbjct: 563 ggattaatccgaacccataggagagaaaaaatggatgcgagtagaatagaccacacaata 504
Query: 778 acaatcgttggtgtcctgttttgccttccaaccaaacctttgagaaagggataaagatgg 837
||||| || ||||||| ||| |||||||| | ||||||||| || || ||||| | |||
Sbjct: 503 acaattgtgggtgtccggttctgccttcccatcaaaccttttaggaaaggatacaaatgc 444
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatgactcatatccg 897
||||||||||| || ||||| || || || || || || ||||||||||||||||||||
Sbjct: 443 acaatcacccagaaggcaaaaaaaagttttccgaacagagggccccatgactcatatcca 384
Query: 898 ttattgatcgcatttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtg 957
||||| || ||||| || || ||||| || || ||||| | ||||| || ||| | ||
Sbjct: 383 ttattaatggcattagataccccagcaacaactccaattaggttcactataagtagtgtt 324
Query: 958 gtaggaggtatcaataaggtagtccatttgaatgtatatagctctgagaactcctcatca 1017
|| || || ||||| | ||| ||||| || |||| |||||||||||| || || ||||||
Sbjct: 323 gtggggggaatcaacagggttgtccacttaaatgcatatagctctgaaaaatcatcatca 264
Query: 1018 tctccaccctttgatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagt 1077
|| ||| | ||||||||||| || || |||||||||||||||| | || || | |
Sbjct: 263 tccccagcttttgatgtcacagtaaaatttgtatcaacaccagcaagaactttcaacaac 204
Query: 1078 ccctggaacacagcaaagaggtgtgaggacacacctccaatgacccagaactgctcattc 1137
|| ||||| |||||||| | |||| |||||||||||||| ||||| || || || ||
Sbjct: 203 ccttggaaaacagcaaacaaatgtgcagacacacctccaatcacccaaaattgttcgttt 144
Query: 1138 ctccaccagtcatcaattccaacaccactccatctcatttctaggatgc 1186
||||||| |||||||||| |||||||||||| | ||| ||||||||||
Sbjct: 143 ctccacctgtcatcaattggaacaccactccaccgcatctctaggatgc 95
>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL85 3' end, mRNA sequence
Length = 771
Score = 153 bits (77), Expect = 7e-035
Identities = 371/469 (79%)
Strand = Plus / Minus
Query: 718 ggatcaatccgaacccaaaggagcgagaagattgaagccagcagaatggaccagacgatg 777
|||| |||||||||||| ||||| || || || || || || ||||| ||||| || ||
Sbjct: 571 ggattaatccgaacccataggagagaaaaaatggatgcgagtagaatagaccacacaata 512
Query: 778 acaatcgttggtgtcctgttttgccttccaaccaaacctttgagaaagggataaagatgg 837
||||| || ||||||| ||| |||||||| | ||||||||| || || ||||| | |||
Sbjct: 511 acaattgtgggtgtccggttctgccttcccatcaaaccttttaggaaaggatacaaatgc 452
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatgactcatatccg 897
||||||||||| || ||||| || || || || || || ||||||||||||||||||||
Sbjct: 451 acaatcacccagaaggcaaaaaaaagttttccgaacagagggccccatgactcatatcca 392
Query: 898 ttattgatcgcatttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtg 957
||||| || ||||| || || ||||| || || ||||| | ||||| || ||| | ||
Sbjct: 391 ttattaatggcattagataccccagcaacaactccaattaggttcactataagtagtgtt 332
Query: 958 gtaggaggtatcaataaggtagtccatttgaatgtatatagctctgagaactcctcatca 1017
|| || || ||||| | ||| ||||| || |||| |||||||||||| || || ||||||
Sbjct: 331 gtggggggaatcaacagggttgtccacttaaatgcatatagctctgaaaaatcatcatca 272
Query: 1018 tctccaccctttgatgtcacggtgaagcttgtatcaacaccagctatgaccttgagaagt 1077
|| ||| | ||||||||||| || || |||||||||||||||| | || || | |
Sbjct: 271 tccccagcttttgatgtcacagtaaaatttgtatcaacaccagcaagaactttcaacaac 212
Query: 1078 ccctggaacacagcaaagaggtgtgaggacacacctccaatgacccagaactgctcattc 1137
|| ||||| |||||||| | |||| |||||||||||||| ||||| || || || ||
Sbjct: 211 ccttggaaaacagcaaacaaatgtgcagacacacctccaatcacccaaaattgttcgttt 152
Query: 1138 ctccaccagtcatcaattccaacaccactccatctcatttctaggatgc 1186
||||||| |||||||||| |||||||||||| | ||| ||||||||||
Sbjct: 151 ctccacctgtcatcaattggaacaccactccaccgcatctctaggatgc 103
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 151 bits (76), Expect = 3e-034
Identities = 327/408 (80%), Gaps = 2/408 (0%)
Strand = Plus / Minus
Query: 2455 tttccaggccagggggttccatcttgcattgtccatccttcttcaggaactttctgggct 2514
|||||||||||||| || ||||||||||| ||| || |||||||| || ||||||||
Sbjct: 1430 tttccaggccagggagtgccatcttgcataacccagccctcttcaggtaccttctgggcc 1371
Query: 2515 ttggcaactaaggcattgattctcaccttgaattcctcatactctctcttcattgctctc 2574
|| ||||| | |||||||| | ||||||||||| ||||| |||||||||||||| |||
Sbjct: 1370 ttcgcaacaagcgcattgatccgaaccttgaattcttcatattctctcttcattgccctc 1311
Query: 2575 ctctccctaacaaa-gtttgctgccaccttgtctttcaagtagtctatcttctgttggaa 2633
| ||| | ||||| || |||| || ||||| |||||||| || || ||| || |||
Sbjct: 1310 cgctcttttacaaaagtaggctgt-actttgtccttcaagtaatccattttcagtgagaa 1252
Query: 2634 gtaccactctggagcgcgaggttcaatattgtaccgtttgcagaaaggaacccatttctt 2693
||||||||||||||| | |||||||| || || |||||| || || ||||||||| |
Sbjct: 1251 gtaccactctggagctctgggttcaatgttaaactttttgcaaaatggcacccatttcct 1192
Query: 2694 tgcaaattcagatgtttcagataatgcttcaaacgttagcattgcagcaccatcatcaga 2753
||||||||| || ||||| || | | ||| || || | ||| || || ||||| |||||
Sbjct: 1191 tgcaaattctgaagtttctgaaagggattcgaaagtcaacatggctgctccatcgtcaga 1132
Query: 2754 aacatagcaagaaaccttatcaacaggataatccaccgaaaggatagatagaacagtatt 2813
||||||||| |||||||| ||||||||||||||||| || || || || |||||||| ||
Sbjct: 1131 aacatagcaggaaaccttgtcaacaggataatccacagacagaatcgacagaacagtgtt 1072
Query: 2814 tgttgtgaccaaaggaggttcctttaagggatcaaccgtactgacaaa 2861
|| || || | |||||| |||||||| || ||||| |||||||||||
Sbjct: 1071 tgcagtaacaagaggaggctcctttaaagggtcaactgtactgacaaa 1024
Score = 115 bits (58), Expect = 1e-023
Identities = 163/198 (82%)
Strand = Plus / Minus
Query: 1458 acgatctgaaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagta 1517
|||||| |||||||| | ||| ||||| |||||||||||| || ||| ||||||||
Sbjct: 2403 acgatcagaaagatttataggagcagaccctttgaatgcagggcgaggaggcatgcagta 2344
Query: 1518 aattgaccgccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactga 1577
||| || | ||| ||| || |||||| || || ||||||| ||||||||| || |||||
Sbjct: 2343 aatggatctccagccacgagcatgcattttaaatccagttaaaatatcttccgtcactga 2284
Query: 1578 tccatagatccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaat 1637
||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 2283 accataaatccaaccaatctcacgtccccagtctgtcttgtcttcatacccacagctaat 2224
Query: 1638 gacatgtatagcttcttt 1655
||||| |||||||||||
Sbjct: 2223 aacatggatagcttcttt 2206
Score = 99.6 bits (50), Expect = 9e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 1105 gacacacctccaatgacccagaactgctcattcctccaccagtcatcaattccaacacca 1164
||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |||
Sbjct: 2756 gacacacctccaatgacccagaattgttcattcctccaccattcatcaataccaacccca 2697
Query: 1165 ctccatctcatttc 1178
||||||| ||||||
Sbjct: 2696 ctccatcgcatttc 2683
Score = 73.8 bits (37), Expect = 5e-011
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 778 acaatcgttggtgtcctgttttgccttccaaccaaacctttgagaaagggataaagatgg 837
||||| || |||||||||||||| | ||| | ||||||||| || || || |||||||||
Sbjct: 3086 acaattgtgggtgtcctgttttgtcgtcccatcaaacctttcaggaaagggtaaagatgg 3027
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatg 886
|||||||||||||| ||||| || || || || || ||||| |||||||
Sbjct: 3026 acaatcacccaaaacgcaaaaaagagttttccgaacaggggaccccatg 2978
Score = 73.8 bits (37), Expect = 5e-011
Identities = 232/297 (78%)
Strand = Plus / Minus
Query: 2028 acatccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatc 2087
|||||| ||||| ||||||| ||| ||||| || |||||||||||||| | ||||||||
Sbjct: 1857 acatcctgtacccacataaactgggccctggattccatccaaacctttgagattgatatc 1798
Query: 2088 aaaaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttg 2147
|||||| || ||| | || ||||| || |||| | |||||| |||||||| |||||
Sbjct: 1797 aaaaaacactgtattgtgattggcataccgatcattcctatcaataccatcaaacctttg 1738
Query: 2148 agggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgc 2207
||| ||||| || || ||||| ||| || || ||| ||||||||||||||||| ||
Sbjct: 1737 aggaaactggacgtaacaaacagacttcccaagattaggatccatcataaaacacatggc 1678
Query: 2208 ttcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatgg 2267
|| | ||||| || || || || |||||||||||||| | ||| |||| ||| |
Sbjct: 1677 ctcacgcagcgccttactattatttatatagtgatcacaatcgaggttcaacagataaga 1618
Query: 2268 agcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctt 2324
||||||| ||||| || || || |||||||||| |||||||||||| ||||||||
Sbjct: 1617 tccatttgtgagtactgctgaaacacggaccaatgaattcatagcaccggctttctt 1561
>gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_17_D03_A029 5', mRNA sequence
Length = 862
Score = 135 bits (68), Expect = 2e-029
Identities = 325/408 (79%), Gaps = 2/408 (0%)
Strand = Plus / Minus
Query: 2455 tttccaggccagggggttccatcttgcattgtccatccttcttcaggaactttctgggct 2514
|||||||||||| | || ||||||||||| ||| || |||||||| || ||||||||
Sbjct: 496 tttccaggccagagagtgccatcttgcataacccagccctcttcaggtaccttctgggcc 437
Query: 2515 ttggcaactaaggcattgattctcaccttgaattcctcatactctctcttcattgctctc 2574
|| ||||| | |||||||| | ||||||||||| ||||| |||||||||||||| |||
Sbjct: 436 ttcgcaacaagcgcattgatccgaaccttgaattcttcatattctctcttcattgccctc 377
Query: 2575 ctctccctaacaaa-gtttgctgccaccttgtctttcaagtagtctatcttctgttggaa 2633
| ||| | ||||| || |||| || ||||| |||||||| || || ||| || ||
Sbjct: 376 cgctcttttacaaaagtaggctgt-actttgtccttcaagtaatccattttcagtgaaaa 318
Query: 2634 gtaccactctggagcgcgaggttcaatattgtaccgtttgcagaaaggaacccatttctt 2693
||||||||||||||| | |||||||| || || |||||| || || ||||||||| |
Sbjct: 317 gtaccactctggagctctgggttcaatgttaaactttttgcaaaatggcacccatttcct 258
Query: 2694 tgcaaattcagatgtttcagataatgcttcaaacgttagcattgcagcaccatcatcaga 2753
||||||||| || ||||| || | | ||| || || | ||| || || ||||| |||||
Sbjct: 257 tgcaaattctgaagtttctgaaagggattcgaaagtcaacatggctgctccatcgtcaga 198
Query: 2754 aacatagcaagaaaccttatcaacaggataatccaccgaaaggatagatagaacagtatt 2813
||||||||| |||||||| ||||||||||||||||| || || || || |||||||| ||
Sbjct: 197 aacatagcaggaaaccttgtcaacaggataatccacagacagaatcgacagaacagtgtt 138
Query: 2814 tgttgtgaccaaaggaggttcctttaagggatcaaccgtactgacaaa 2861
|| || || | |||||| |||||||| || ||||| |||||||||||
Sbjct: 137 tgcagtaacaagaggaggctcctttaaagggtcaactgtactgacaaa 90
Score = 42.1 bits (21), Expect = 0.18
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 2296 accaatgcattcatagcaccagctttctt 2324
||||||| |||||||||||| ||||||||
Sbjct: 655 accaatgaattcatagcaccggctttctt 627
>gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_D04_A029 3', mRNA sequence
Length = 749
Score = 129 bits (65), Expect = 1e-027
Identities = 113/129 (87%)
Strand = Plus / Plus
Query: 2733 cattgcagcaccatcatcagaaacatagcaagaaaccttatcaacaggataatccaccga 2792
|||||| || |||||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct: 324 cattgccgctccatcatcagaaacatagcatgaaactttatcgacaggataatccacggc 383
Query: 2793 aaggatagatagaacagtatttgttgtgaccaaaggaggttcctttaagggatcaaccgt 2852
||||||||| ||||||||||||| |||||| | |||||| ||||||| ||||| || ||
Sbjct: 384 aaggatagacagaacagtatttgctgtgacaagaggaggctcctttagaggatccactgt 443
Query: 2853 actgacaaa 2861
|||||||||
Sbjct: 444 actgacaaa 452
Score = 58.0 bits (29), Expect = 3e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 2452 ttgtttccaggccagggggttccatcttgcattgtccatccttcttcaggaactttctgg 2511
||||| || ||||| || |||||||||||||| |||||||| ||||| || ||||| ||
Sbjct: 43 ttgttgcctggccatggagttccatcttgcatggtccatccctcttctggcactttntgc 102
Query: 2512 gctttggc 2519
||||||||
Sbjct: 103 gctttggc 110
>dbj|BD235986.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 383
Score = 127 bits (64), Expect = 4e-027
Identities = 238/296 (80%)
Strand = Plus / Minus
Query: 2029 catccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatca 2088
|||||||| || ||||| | ||| ||||| || ||||| | ||| ||||||||||||||
Sbjct: 350 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 291
Query: 2089 aaaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttga 2148
|| || ||| || | ||| |||||||| |||||||||||||| ||||| ||||| |||
Sbjct: 290 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 231
Query: 2149 gggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgct 2208
|||||||| |||||||| | |||||||| ||| || ||||| | ||||||||||||
Sbjct: 230 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 171
Query: 2209 tcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatgga 2268
||| | ||||| |||||||||| |||||||||||||||| ||| || | ||||
Sbjct: 170 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggg 111
Query: 2269 gcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctt 2324
||||||||||| || ||||||||||| |||| || ||||| ||||| ||||||||
Sbjct: 110 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttctt 55
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 127 bits (64), Expect = 4e-027
Identities = 238/296 (80%)
Strand = Plus / Minus
Query: 2029 catccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatca 2088
|||||||| || ||||| | ||| ||||| || ||||| | ||| ||||||||||||||
Sbjct: 1871 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 1812
Query: 2089 aaaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttga 2148
|| || ||| || | ||| |||||||| |||||||||||||| ||||| ||||| |||
Sbjct: 1811 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 1752
Query: 2149 gggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgct 2208
|||||||| |||||||| | |||||||| ||| || ||||| | ||||||||||||
Sbjct: 1751 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 1692
Query: 2209 tcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatgga 2268
||| | ||||| |||||||||| |||||||||||||||| ||| || | ||||
Sbjct: 1691 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggg 1632
Query: 2269 gcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctt 2324
||||||||||| || ||||||||||| |||| || ||||| ||||| ||||||||
Sbjct: 1631 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttctt 1576
Score = 60.0 bits (30), Expect = 8e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgc 2481
||||||||||||||||| ||||| ||| |||||| || |||||||| |||||||| |||
Sbjct: 1478 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 1419
Query: 2482 at 2483
||
Sbjct: 1418 at 1417
Score = 52.0 bits (26), Expect = 2e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 2950 aaccactttgggaattgatcaagaatccaagacatggcaaaccagatttcacagataa 3007
|||||||| ||||| |||||||||||||| || | ||| |||||||| || |||||||
Sbjct: 950 aaccacttggggaactgatcaagaatccaggagaaggcgaaccagatctcgcagataa 893
Score = 44.1 bits (22), Expect = 0.045
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 2670 tttgcagaaaggaacccatttc 2691
||||||||||||||||||||||
Sbjct: 1230 tttgcagaaaggaacccatttc 1209
Score = 42.1 bits (21), Expect = 0.18
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 817 ttgagaaagggataaagatggacaatcacccaaaatgcaaagaatagcttcccaaagagg 876
||||| |||||||| ||||| | |||||||| | || ||||||||||| ||||| ||
Sbjct: 3077 ttgaggaagggatacagatgcaatatcacccagcaggcgaagaatagctttccaaaaagc 3018
Query: 877 gggccccatgact 889
|| ||||||||||
Sbjct: 3017 ggtccccatgact 3005
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 127 bits (64), Expect = 4e-027
Identities = 238/296 (80%)
Strand = Plus / Minus
Query: 2029 catccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatca 2088
|||||||| || ||||| | ||| ||||| || ||||| | ||| ||||||||||||||
Sbjct: 723 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 664
Query: 2089 aaaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttga 2148
|| || ||| || | ||| |||||||| |||||||||||||| ||||| ||||| |||
Sbjct: 663 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 604
Query: 2149 gggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgct 2208
|||||||| |||||||| | |||||||| ||| || ||||| | ||||||||||||
Sbjct: 603 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 544
Query: 2209 tcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatgga 2268
||| | ||||| |||||||||| |||||||||||||||| ||| || | ||||
Sbjct: 543 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggg 484
Query: 2269 gcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctt 2324
||||||||||| || ||||||||||| |||| || ||||| ||||| ||||||||
Sbjct: 483 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttctt 428
Score = 60.0 bits (30), Expect = 8e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgc 2481
||||||||||||||||| ||||| ||| |||||| || |||||||| |||||||| |||
Sbjct: 330 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 271
Query: 2482 at 2483
||
Sbjct: 270 at 269
Score = 44.1 bits (22), Expect = 0.045
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 2670 tttgcagaaaggaacccatttc 2691
||||||||||||||||||||||
Sbjct: 82 tttgcagaaaggaacccatttc 61
Score = 42.1 bits (21), Expect = 0.18
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 817 ttgagaaagggataaagatggacaatcacccaaaatgcaaagaatagcttcccaaagagg 876
||||| |||||||| ||||| | |||||||| | || ||||||||||| ||||| ||
Sbjct: 1929 ttgaggaagggatacagatgcaatatcacccagcaggcgaagaatagctttccaaaaagc 1870
Query: 877 gggccccatgact 889
|| ||||||||||
Sbjct: 1869 ggtccccatgact 1857
>gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRNA, partial cds
Length = 2287
Score = 127 bits (64), Expect = 4e-027
Identities = 238/296 (80%)
Strand = Plus / Minus
Query: 2029 catccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatca 2088
|||||||| || ||||| | ||| ||||| || ||||| | ||| ||||||||||||||
Sbjct: 572 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 513
Query: 2089 aaaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttga 2148
|| || ||| || | ||| |||||||| |||||||||||||| ||||| ||||| |||
Sbjct: 512 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 453
Query: 2149 gggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgct 2208
|||||||| |||||||| | |||||||| ||| || ||||| | ||||||||||||
Sbjct: 452 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 393
Query: 2209 tcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatgga 2268
||| | ||||| |||||||||| |||||||||||||||| ||| || | ||||
Sbjct: 392 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggg 333
Query: 2269 gcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctt 2324
||||||||||| || ||||||||||| |||| || ||||| ||||| ||||||||
Sbjct: 332 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttctt 277
Score = 60.0 bits (30), Expect = 8e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgc 2481
||||||||||||||||| ||||| ||| |||||| || |||||||| |||||||| |||
Sbjct: 179 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 120
Query: 2482 at 2483
||
Sbjct: 119 at 118
Score = 42.1 bits (21), Expect = 0.18
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 817 ttgagaaagggataaagatggacaatcacccaaaatgcaaagaatagcttcccaaagagg 876
||||| |||||||| ||||| | |||||||| | || ||||||||||| ||||| ||
Sbjct: 1817 ttgaggaagggatacagatgcaatatcacccagcaggcgaagaatagctttccaaaaagc 1758
Query: 877 gggccccatgact 889
|| ||||||||||
Sbjct: 1757 ggtccccatgact 1745
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 127 bits (64), Expect = 4e-027
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 1105 gacacacctccaatgacccagaactgctcattcctccaccagtcatcaattccaacacca 1164
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 3494 gacacacctccaatcacccagaactgctcattcctccaccattcatcaatgccaaccccg 3435
Query: 1165 ctccatctcatttctaggatgctcgtagcaaaaatg 1200
||||||| ||||||||| |||| |||||||||||||
Sbjct: 3434 ctccatcgcatttctagtatgcccgtagcaaaaatg 3399
Score = 111 bits (56), Expect = 2e-022
Identities = 128/152 (84%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgc 2481
||||| ||||| |||||||| || || ||| ||||||||||| || ||||||||||||
Sbjct: 2216 acctgtatcatcccaggatggtcccgggtattatttccaggccaaggtgttccatcttgc 2157
Query: 2482 attgtccatccttcttcaggaactttctgggctttggcaactaaggcattgattctcacc 2541
|| |||| |||||||||||||| ||||| ||||| ||||| | |||||||||| |||
Sbjct: 2156 ataatccagccttcttcaggaaccttctgagctttagcaacaagagcattgattcggacc 2097
Query: 2542 ttgaattcctcatactctctcttcattgctct 2573
||||| || ||||| |||||||||||||||||
Sbjct: 2096 ttgaactcttcatattctctcttcattgctct 2065
Score = 109 bits (55), Expect = 9e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 1513 cagtaaattgaccgccaaccatgacaatgcatcttgaaaccagttagaatatcttctgta 1572
||||| ||||| ||||||||| || |||||| || || ||||| | ||||||||||||
Sbjct: 3086 cagtatattgatcgccaaccacgagcatgcattttaaagccagtcaaaatatcttctgtc 3027
Query: 1573 actgatccatagatccagccaatctcttttccccagtctgtcttgtcttcataaccacaa 1632
|| || ||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 3026 acagaaccatatatccaaccaatctcttttccccaatctgacttgtcttcataaccacag 2967
Query: 1633 ctaatgacatgtatagcttcttt 1655
|| || ||||| || ||||||||
Sbjct: 2966 ctgattacatggattgcttcttt 2944
Score = 109 bits (55), Expect = 9e-022
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 2683 acccatttctttgcaaattcagatgtttcagataatgcttcaaacgttagcattgcagca 2742
||||||||| |||||||||| || |||||||| | |||||||| ||||||||||||||
Sbjct: 1955 acccatttccttgcaaattctgaggtttcagaaagggcttcaaatgttagcattgcagct 1896
Query: 2743 ccatcatcagaaacatagcaagaaaccttatcaacaggataatccaccgaaaggatagat 2802
||||| ||||| ||||| || ||||| |||||||| ||||| ||||| ||||| || ||
Sbjct: 1895 ccatcgtcagacacataacatgaaactttatcaactggatagtccacagaaagaattgac 1836
Query: 2803 agaacagtatttgttgtgaccaaaggaggttcctttaagggatcaaccgtactgacaaa 2861
| ||||||||||| || || | |||||| ||||| | |||||||| || ||||||||
Sbjct: 1835 aaaacagtatttgccgtcacaagaggaggctccttcataggatcaactgtgctgacaaa 1777
Score = 79.8 bits (40), Expect = 8e-013
Identities = 124/152 (81%)
Strand = Plus / Minus
Query: 2053 ccctgaataccatccaaacctttcatgttgatatcaaaaaagacaacattccggttagca 2112
||||| || ||||||||||| |||| ||||||||||||||||| ||| | ||||||
Sbjct: 2585 ccctgtatcccatccaaacccttcaaattgatatcaaaaaagactgtattgtgattagca 2526
Query: 2113 tatcggtcatggcgatcaatcccatcaaatctttgagggaactgtacatagcaaaccttc 2172
||||| |||| | ||||| |||||||| |||||||||||||| ||||| || || |||
Sbjct: 2525 tatcgatcatttctgtcaatgccatcaaacctttgagggaactgaacataacagactttc 2466
Query: 2173 tttcctagtaaagggtccatcataaaacacat 2204
|| || || ||| |||||||||||||||||
Sbjct: 2465 ttcccaagagtaggatccatcataaaacacat 2434
Score = 75.8 bits (38), Expect = 1e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 810 caaacctttgagaaagggataaagatggacaatcacccaaaatgcaaagaatagcttccc 869
|||||||||||| || |||||||| || |||||||||||||| ||||| || || |||||
Sbjct: 3792 caaacctttgaggaaaggataaaggtgaacaatcacccaaaaagcaaaaaagagtttccc 3733
Query: 870 aaagagggggccccatga 887
||| ||||| ||||||||
Sbjct: 3732 aaacaggggaccccatga 3715
Score = 44.1 bits (22), Expect = 0.045
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2965 tgatcaagaatccaagacatggcaaaccagatttcaca 3002
|||||||||||||| || ||||||||||| || |||||
Sbjct: 1673 tgatcaagaatccaggatatggcaaaccaaatctcaca 1636
>gb|AW985238.1|AW985238 NXNV_132_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_132_G11 5' similar to Arabidopsis thaliana sequence
At4g39350 cellulose synthase catalytic subunit (Ath-A)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 425
Score = 121 bits (61), Expect = 2e-025
Identities = 272/344 (79%)
Strand = Plus / Minus
Query: 2026 acacatccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgata 2085
|||||||||||||||||||| || || | |||| |||||||| ||||||| ||||||
Sbjct: 355 acacatccagtaccaacatatatgggtcnnngaatgccatccaannctttcatattgata 296
Query: 2086 tcaaaaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctt 2145
|| || || || || || || || ||||| || || || | |||||| |||||||||||
Sbjct: 295 tcgaagaaaaccacgttgcgattggcataacgatcgtgcctatcaataccatcaaatctc 236
Query: 2146 tgagggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacatt 2205
|| || ||||| ||||| || || |||||||| | ||| |||||||| ||||||||
Sbjct: 235 tgtggaaactgcacataacagactttctttccaacagtaggatccatcatgaaacacatg 176
Query: 2206 gcttcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatat 2265
| ||| || ||||| || ||||| || || ||||||||||||||||| | || |||
Sbjct: 175 gattcacgaattgccttactattgtttatataatgatcacaatccaagttcagcatataa 116
Query: 2266 ggagcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctta 2325
||||||||||| || ||||| |||||||| ||||| | |||||| || || |||||||||
Sbjct: 115 ggagcatttgtaagaacagccgagactcgaaccaaagaattcattgcgcctgctttctta 56
Query: 2326 tgatggttatagcctggtcgtttctctctagaaacataaaccaa 2369
||||| || | || |||| || |||||||||||||| |||||
Sbjct: 55 tgatgattgaatccaggtctcttttctctagaaacatagaccaa 12
>gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_22_A02_A029 5', mRNA sequence
Length = 741
Score = 121 bits (61), Expect = 2e-025
Identities = 235/293 (80%)
Strand = Plus / Minus
Query: 2032 ccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatcaaaa 2091
||||| || ||||| | ||| ||||| || ||||| | ||| |||||||||||||| ||
Sbjct: 658 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 599
Query: 2092 aagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttgaggg 2151
|| ||| || | ||| |||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 598 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgaggg 539
Query: 2152 aactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgcttcc 2211
||||| |||||||| | |||||||| ||| || ||||| | |||||||||||| |||
Sbjct: 538 aactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcctcc 479
Query: 2212 tttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatggagca 2271
| ||||| |||||||||| |||||||||||||||| ||| || | |||| |||
Sbjct: 478 cgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggggca 419
Query: 2272 tttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctt 2324
|||||||| || ||||||||||| |||| || ||||| ||||| ||||||||
Sbjct: 418 tttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttctt 366
Score = 60.0 bits (30), Expect = 8e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgc 2481
||||||||||||||||| ||||| ||| |||||| || |||||||| |||||||| |||
Sbjct: 268 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 209
Query: 2482 at 2483
||
Sbjct: 208 at 207
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 121 bits (61), Expect = 2e-025
Identities = 459/589 (77%), Gaps = 2/589 (0%)
Strand = Plus / Minus
Query: 2028 acatccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatc 2087
|||||||||||| ||||| | ||| || || || |||||||| || ||||||||||||||
Sbjct: 1650 acatccagtacccacatacactggcccttggatgccatccaatcccttcatgttgatatc 1591
Query: 2088 aaaaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttg 2147
|| || ||| || || || |||||||| || |||||| || ||||| || || ||
Sbjct: 1590 gaagaacacagtgtttcgattggcatatcgatcgctgcgatcgataccatcgaacctctg 1531
Query: 2148 agggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgc 2207
|||||||| || ||||| || ||| |||| | ||| ||||||||||| | ||||||
Sbjct: 1530 tgggaactgcacgtagcacacgttccttccaacctcaggatccatcataaagcgcattgc 1471
Query: 2208 ttcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatgg 2267
||| | ||||||||||| || | ||||||||||||||||||||| | || |||||
Sbjct: 1470 ttcgcgaacggccttgctgttattaacgtagtgatcacaatccaagttcagcaggtatgg 1411
Query: 2268 agcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttcttatg 2327
|| || || ||||| ||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 1410 ggcgttcgtcagtacggcagagactcgaaccaatgcattcatggcaccggccttcttatg 1351
Query: 2328 atggttatagcctggtcgtttctctctagaaacataaaccaatcgtggcagttcatttcc 2387
|| | ||| || || |||||||| | ||| ||||| || | || |||||||| |||||
Sbjct: 1350 gtgctgatacccgggccgtttctcacgagagacatagacaagccggggcagttcgtttcc 1291
Query: 2388 ctcacagtcaaggcctccgctttggccaaggaagacctgaatcattccaggatgatcacg 2447
|| |||| | |||| | || || | ||| ||||||||||| || || ||||||||
Sbjct: 1290 ttctacgtcatgcgctcctgtgtgtcctaagaatacctgaatcatcccggggtgatcacg 1231
Query: 2448 aacattgtttccaggccagggggttccatcttgcattgtccatccttcttcaggaacttt 2507
| ||||| |||||||| | |||||||| ||||| |||||||||| || || ||
Sbjct: 1230 agtgttgttcccaggccaagctgttccatcctgcatgatccatccttcgtccggtgtctt 1171
Query: 2508 ctgggctttggcaactaaggcattgattctcaccttgaattcctcatactctctcttcat 2567
||| |||||||| || | |||||||| || || ||| ||||||| |||||||| |||||
Sbjct: 1170 ctgagctttggcgacaagcgcattgatcctaactttgtattcctcgtactctcttttcat 1111
Query: 2568 tgctctcctctccctaacaaagtt-tgctgccaccttgtctttcaagta 2615
||||| | |||| | |||||||| |||| ||||||||||||||||||
Sbjct: 1110 tgctcggcgctccttgacaaagttaggctg-caccttgtctttcaagta 1063
Score = 107 bits (54), Expect = 4e-021
Identities = 201/250 (80%)
Strand = Plus / Minus
Query: 1406 tgctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctg 1465
||||||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||
Sbjct: 2230 tgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctg 2171
Query: 1466 aaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgacc 1525
| ||||| | ||| ||||| || |||||||| | || || ||||||||||| || |
Sbjct: 2170 atagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagc 2111
Query: 1526 gccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccataga 1585
|||| || | || |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct: 2110 gccaccctcggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccataga 2051
Query: 1586 tccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgta 1645
|||| || | |||||| ||||| || || || ||||| || ||||| || || |||||||
Sbjct: 2050 tccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcacatgta 1991
Query: 1646 tagcttcttt 1655
||||||||||
Sbjct: 1990 tagcttcttt 1981
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 2725 aacgttagcattgcagcaccatcatcagaaacatagcaagaaaccttatcaacaggataa 2784
||||| ||||| || |||||||| ||||| |||||||||||||| || || ||||| |||
Sbjct: 953 aacgtgagcatggccgcaccatcgtcagagacatagcaagaaactttctccacagggtaa 894
Query: 2785 tccac 2789
|||||
Sbjct: 893 tccac 889
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 119 bits (60), Expect = 9e-025
Identities = 237/296 (80%)
Strand = Plus / Minus
Query: 2029 catccagtaccaacataaattggaccctgaataccatccaaacctttcatgttgatatca 2088
|||||||| || ||||| | ||| ||||| || ||||| | ||| ||||||||||||||
Sbjct: 944 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 885
Query: 2089 aaaaagacaacattccggttagcatatcggtcatggcgatcaatcccatcaaatctttga 2148
|| || ||| || | ||| |||||||| |||||||||||||| ||||| ||||| |||
Sbjct: 884 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 825
Query: 2149 gggaactgtacatagcaaaccttctttcctagtaaagggtccatcataaaacacattgct 2208
|||||||| |||||||| | |||||||| ||| || ||||| | ||||||||||||
Sbjct: 824 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 765
Query: 2209 tcctttatagccttgctgttgttgatgtagtgatcacaatccaagtttaacaaatatgga 2268
||| | ||||| |||||||||| |||||||||||||||| ||| || | | ||
Sbjct: 764 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaacggg 705
Query: 2269 gcatttgttagtacagcagagactcggaccaatgcattcatagcaccagctttctt 2324
||||||||||| || ||||||||||| |||| || ||||| ||||| ||||||||
Sbjct: 704 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttctt 649
Score = 60.0 bits (30), Expect = 8e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgc 2481
||||||||||||||||| ||||| ||| |||||| || |||||||| |||||||| |||
Sbjct: 551 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 492
Query: 2482 at 2483
||
Sbjct: 491 at 490
Score = 44.1 bits (22), Expect = 0.045
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 2670 tttgcagaaaggaacccatttc 2691
||||||||||||||||||||||
Sbjct: 303 tttgcagaaaggaacccatttc 282
Score = 42.1 bits (21), Expect = 0.18
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 817 ttgagaaagggataaagatggacaatcacccaaaatgcaaagaatagcttcccaaagagg 876
||||| |||||||| ||||| | |||||||| | || ||||||||||| ||||| ||
Sbjct: 2150 ttgaggaagggatacagatgcaatatcacccagcaggcgaagaatagctttccaaaaagc 2091
Query: 877 gggccccatgact 889
|| ||||||||||
Sbjct: 2090 ggtccccatgact 2078
>gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_B08 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 536
Score = 117 bits (59), Expect = 4e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 1480 gcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaa 1539
||||| ||||||||||| | ||||| || || |||||||| |||||||| || ||
Sbjct: 309 gcagaccctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtg 250
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| ||||| || ||||| ||||||||||||||||| |||| ||||
Sbjct: 249 tgcatcttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctct 190
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaa 1658
|||||||| || || ||||||||||| ||||| || |||||||| ||||| || |||||
Sbjct: 189 tttccccattccgttttgtcttcatatccacagctgatgacatgaatagcctccttcaa 131
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 117 bits (59), Expect = 4e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 1480 gcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaa 1539
||||| ||||||||||| | ||||| || || |||||||| |||||||| || ||
Sbjct: 2590 gcagaccctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtg 2531
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| ||||| || ||||| ||||||||||||||||| |||| ||||
Sbjct: 2530 tgcatcttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctct 2471
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaa 1658
|||||||| || || ||||||||||| ||||| || |||||||| ||||| || |||||
Sbjct: 2470 tttccccattccgttttgtcttcatatccacagctgatgacatgaatagcctccttcaa 2412
Score = 101 bits (51), Expect = 2e-019
Identities = 219/275 (79%)
Strand = Plus / Minus
Query: 2056 tgaataccatccaaacctttcatgttgatatcaaaaaagacaacattccggttagcatat 2115
||||| ||||||| ||||||||||||||||||||| || || || || || || ||
Sbjct: 2059 tgaattccatccagacctttcatgttgatatcaaagaatacggtgtttcgattggcgtaa 2000
Query: 2116 cggtcatggcgatcaatcccatcaaatctttgagggaactgtacatagcaaaccttcttt 2175
||||||| ||||||||| ||||| ||||| |||||||| || ||||| || || || |
Sbjct: 1999 cggtcattgcgatcaataccatcgaatctctgagggaattggacataacagacttttctc 1940
Query: 2176 cctagtaaagggtccatcataaaacacattgcttcctttatagccttgctgttgttgatg 2235
|| | ||| ||||||||||| ||||| ||||| | || |||||||| ||||| |||
Sbjct: 1939 ccaacctgaggatccatcataaagcacatgccttccctgattgccttgctattgttaatg 1880
Query: 2236 tagtgatcacaatccaagtttaacaaatatggagcatttgttagtacagcagagactcgg 2295
|||||||||||||||| || | || | |||||||||| || || |||||||| || ||
Sbjct: 1879 tagtgatcacaatccagattcagcataaatggagcattggtgagcacagcagaaacccga 1820
Query: 2296 accaatgcattcatagcaccagctttcttatgatg 2330
||||| |||||||| ||||| || ||||| |||||
Sbjct: 1819 accaaagcattcatggcaccggccttcttgtgatg 1785
Score = 69.9 bits (35), Expect = 8e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 2944 atagggaaccactttgggaattgatcaagaatccaagacatggcaaaccagatttcaca 3002
||||| |||||||| || || |||||||||||||| |||| ||||||||||||||||||
Sbjct: 1171 ataggcaaccacttgggaaactgatcaagaatccatgacaaggcaaaccagatttcaca 1113
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Minus
Query: 2428 atcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgcattgtc 2487
||||| |||||||| ||||| ||| || |||||||| || || || ||||||||||||
Sbjct: 1687 atcataccaggatggtcacgggtattattaccaggccaaggcgtaccgtcttgcattgtc 1628
Query: 2488 catccttcttcaggaactttctgggctttggcaactaaggcattgattctcaccttgaat 2547
|||||||| | || ||||| ||| || ||||| || |||||| | ||||||||||
Sbjct: 1627 catccttccttgggcactttagaggcctttgcaaccaaccgattgatgcgcaccttgaat 1568
Query: 2548 tcctcatactctctcttcat 2567
|| ||||| |||||||||||
Sbjct: 1567 tcttcatattctctcttcat 1548
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 817 ttgagaaagggataaagatggacaatcacccaaaatgcaaagaatagcttcccaaagagg 876
||||| || ||||| || || ||||| ||||| ||||||||||| ||||| || |||||
Sbjct: 3253 ttgaggaaaggatacaggtgcacaatgacccagaatgcaaagaaaagcttacccaagaga 3194
Query: 877 gggccccatgactcatatccgttattgatcgcat 910
|| |||||||||| | |||| || ||||| ||||
Sbjct: 3193 ggaccccatgactgaaatccattgttgattgcat 3160
Score = 46.1 bits (23), Expect = 0.011
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 1111 cctccaatgacccagaactgctcattcctccaccagtcatcaattccaacaccactccat 1170
|||||||| ||||||||||| ||||| | |||||| || ||||| | || ||||||||
Sbjct: 2959 cctccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccac 2900
Query: 1171 ctcattt 1177
|||||||
Sbjct: 2899 ctcattt 2893
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 117 bits (59), Expect = 4e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 1480 gcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaa 1539
||||| ||||||||||| | ||||| || || |||||||| |||||||| || ||
Sbjct: 2606 gcagaccctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtg 2547
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| ||||| || ||||| ||||||||||||||||| |||| ||||
Sbjct: 2546 tgcatcttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctct 2487
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaa 1658
|||||||| || || ||||||||||| ||||| || |||||||| ||||| || |||||
Sbjct: 2486 tttccccattccgttttgtcttcatatccacagctgatgacatgaatagcctccttcaa 2428
Score = 109 bits (55), Expect = 9e-022
Identities = 220/275 (80%)
Strand = Plus / Minus
Query: 2056 tgaataccatccaaacctttcatgttgatatcaaaaaagacaacattccggttagcatat 2115
||||| ||||||| ||||||||||||||||||||| || || || || || || ||
Sbjct: 2075 tgaattccatccagacctttcatgttgatatcaaagaatacggtgtttcgattggcgtaa 2016
Query: 2116 cggtcatggcgatcaatcccatcaaatctttgagggaactgtacatagcaaaccttcttt 2175
||||||| ||||||||| ||||| ||||| |||||||| || ||||| || || || |
Sbjct: 2015 cggtcattgcgatcaataccatcgaatctctgagggaattggacataacagacttttctc 1956
Query: 2176 cctagtaaagggtccatcataaaacacattgcttcctttatagccttgctgttgttgatg 2235
|| | ||| ||||||||||| ||||| ||||| | || |||||||||||||| |||
Sbjct: 1955 ccaacctgaggatccatcataaagcacatgccttccctgattgccttgctgttgttaatg 1896
Query: 2236 tagtgatcacaatccaagtttaacaaatatggagcatttgttagtacagcagagactcgg 2295
|||||||||||||||| || | || | |||||||||| || || |||||||| || ||
Sbjct: 1895 tagtgatcacaatccagattcagcataaatggagcattggtgagcacagcagaaacccga 1836
Query: 2296 accaatgcattcatagcaccagctttcttatgatg 2330
||||| |||||||| ||||| || ||||| |||||
Sbjct: 1835 accaaagcattcatggcaccggccttcttgtgatg 1801
Score = 69.9 bits (35), Expect = 8e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 2944 atagggaaccactttgggaattgatcaagaatccaagacatggcaaaccagatttcaca 3002
||||| |||||||| || || |||||||||||||| |||| ||||||||||||||||||
Sbjct: 1187 ataggcaaccacttgggaaactgatcaagaatccatgacaaggcaaaccagatttcaca 1129
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Minus
Query: 2428 atcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgcattgtc 2487
||||| |||||||| ||||| ||| || |||||||| || || || ||||||||||||
Sbjct: 1703 atcataccaggatggtcacgggtattattaccaggccaaggcgtaccgtcttgcattgtc 1644
Query: 2488 catccttcttcaggaactttctgggctttggcaactaaggcattgattctcaccttgaat 2547
|||||||| | || ||||| ||| || ||||| || |||||| | ||||||||||
Sbjct: 1643 catccttccttgggcactttagaggcctttgcaaccaaccgattgatgcgcaccttgaat 1584
Query: 2548 tcctcatactctctcttcat 2567
|| ||||| |||||||||||
Sbjct: 1583 tcttcatattctctcttcat 1564
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 817 ttgagaaagggataaagatggacaatcacccaaaatgcaaagaatagcttcccaaagagg 876
||||| || ||||| || || ||||| ||||| ||||||||||| ||||| || |||||
Sbjct: 3269 ttgaggaaaggatacaggtgcacaatgacccagaatgcaaagaaaagcttacccaagaga 3210
Query: 877 gggccccatgactcatatccgttattgatcgcat 910
|| |||||||||| | |||| || ||||| ||||
Sbjct: 3209 ggaccccatgactgaaatccattgttgattgcat 3176
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1111 cctccaatgacccagaactgctcattcctccaccagtcatcaattccaacaccactccat 1170
|||||||| ||||||||||| ||||| | |||||| || ||||| | || ||||||||
Sbjct: 2975 cctccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccac 2916
Query: 1171 ctcatttc 1178
||||||||
Sbjct: 2915 ctcatttc 2908
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 117 bits (59), Expect = 4e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 1480 gcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaa 1539
||||| ||||||||||| | ||||| || || |||||||| |||||||| || ||
Sbjct: 2596 gcagaccctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtg 2537
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| ||||| || ||||| ||||||||||||||||| |||| ||||
Sbjct: 2536 tgcatcttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctct 2477
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaa 1658
|||||||| || || ||||||||||| ||||| || |||||||| ||||| || |||||
Sbjct: 2476 tttccccattccgttttgtcttcatatccacagctgatgacatgaatagcctccttcaa 2418
Score = 117 bits (59), Expect = 4e-024
Identities = 221/275 (80%)
Strand = Plus / Minus
Query: 2056 tgaataccatccaaacctttcatgttgatatcaaaaaagacaacattccggttagcatat 2115
||||| ||||||| ||||||||||||||||||||| || || || || || || ||
Sbjct: 2065 tgaattccatccagacctttcatgttgatatcaaagaatacggtgtttcgattggcgtaa 2006
Query: 2116 cggtcatggcgatcaatcccatcaaatctttgagggaactgtacatagcaaaccttcttt 2175
||||||| ||||||||| ||||| ||||| |||||||| || ||||| || || || |
Sbjct: 2005 cggtcattgcgatcaataccatcgaatctctgagggaattggacataacagacttttctc 1946
Query: 2176 cctagtaaagggtccatcataaaacacattgcttcctttatagccttgctgttgttgatg 2235
|| | ||| ||||||||||| ||||| |||||| | || |||||||||||||| |||
Sbjct: 1945 ccaacctgaggatccatcataaagcacatggcttccctgattgccttgctgttgttaatg 1886
Query: 2236 tagtgatcacaatccaagtttaacaaatatggagcatttgttagtacagcagagactcgg 2295
|||||||||||||||| || | || | |||||||||| || || |||||||| || ||
Sbjct: 1885 tagtgatcacaatccagattcagcataaatggagcattggtgagcacagcagaaacccga 1826
Query: 2296 accaatgcattcatagcaccagctttcttatgatg 2330
||||| |||||||| ||||| || ||||| |||||
Sbjct: 1825 accaaagcattcatggcaccggccttcttgtgatg 1791
Score = 69.9 bits (35), Expect = 8e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 2944 atagggaaccactttgggaattgatcaagaatccaagacatggcaaaccagatttcaca 3002
||||| |||||||| || || |||||||||||||| |||| ||||||||||||||||||
Sbjct: 1177 ataggcaaccacttgggaaactgatcaagaatccatgacaaggcaaaccagatttcaca 1119
Score = 56.0 bits (28), Expect = 1e-005
Identities = 112/140 (80%)
Strand = Plus / Minus
Query: 2428 atcattccaggatgatcacgaacattgtttccaggccagggggttccatcttgcattgtc 2487
||||| |||||||| ||||| ||| || |||||||| || || || ||||||||||||
Sbjct: 1693 atcataccaggatggtcacgggtattattaccaggccaaggcgtaccgtcttgcattgtc 1634
Query: 2488 catccttcttcaggaactttctgggctttggcaactaaggcattgattctcaccttgaat 2547
|||||||| | || ||||| ||| || ||||| || |||||| | ||||||||||
Sbjct: 1633 catccttccttgggcactttagaggcctttgcaaccaaccgattgatgcgcaccttgaat 1574
Query: 2548 tcctcatactctctcttcat 2567
|| ||||| |||||||||||
Sbjct: 1573 tcttcatattctctcttcat 1554
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 817 ttgagaaagggataaagatggacaatcacccaaaatgcaaagaatagcttcccaaagagg 876
||||| || ||||| || || ||||| ||||| ||||||||||| ||||| || |||||
Sbjct: 3259 ttgaggaaaggatacaggtgcacaataacccagaatgcaaagaaaagcttacccaagaga 3200
Query: 877 gggccccatgactcatatccgttattgatcgcat 910
|| |||||||||| | |||| || ||||| ||||
Sbjct: 3199 ggaccccatgactgaaatccattgttgattgcat 3166
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 1111 cctccaatgacccagaactgctcattcctccaccagtcatcaattccaacaccactccat 1170
|||||||| ||||||||||| ||||| | |||||| || ||||| | || ||||||||
Sbjct: 2965 cctccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccac 2906
Query: 1171 ctcatttc 1178
||||||||
Sbjct: 2905 ctcatttc 2898
>gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC32 3' end, mRNA sequence
Length = 737
Score = 115 bits (58), Expect = 1e-023
Identities = 175/214 (81%)
Strand = Plus / Minus
Query: 1458 acgatctgaaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagta 1517
||||||||||||||| | |||||||| || ||||||||| ||| ||||||||||||
Sbjct: 699 acgatctgaaagattgattggtgcagatcccttgaatgcaggacgtgcaggtatgcagta 640
Query: 1518 aattgaccgccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactga 1577
||||| ||| || || |||||| || || ||||| | |||||||||||| || ||
Sbjct: 639 tattgaaatccagcctcgagcatgcattttaaacccagtcaaaatatcttctgtgacaga 580
Query: 1578 tccatagatccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaat 1637
||||| ||||| ||||||||||||||||| |||| |||||||||||| ||||| || ||
Sbjct: 579 accataaatccacccaatctcttttccccattctgacttgtcttcatatccacagctgat 520
Query: 1638 gacatgtatagcttctttcaaaagagaagcagga 1671
||||| || ||||||||||| | ||||||||||
Sbjct: 519 aacatgaatggcttctttcaataaagaagcagga 486
Score = 79.8 bits (40), Expect = 8e-013
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 2059 ataccatccaaacctttcatgttgatatcaaaaaagacaacattccggttagcatatcgg 2118
|||||||| |||||| ||| | |||||||||| || ||| || || |||||||||||
Sbjct: 125 ataccatcgaaacctctcaaggtgatatcaaagaacacagtgttacgattagcatatcga 66
Query: 2119 tcatggcgatcaatcccatcaaatctttgagggaactgtacatagcaa 2166
|| || |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 65 tcgtgtcgatcaatgccatcaaatctctgaggaaactgtacatagcaa 18
>gb|DR162195.1|DR162195 RTFE1_16_G12.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_16_G12_A029 3', mRNA sequence
Length = 626
Score = 113 bits (57), Expect = 6e-023
Identities = 198/245 (80%)
Strand = Plus / Plus
Query: 1429 ccaagagcccaccgaagcacctggtgaagacgatctgaaagattcagaggtgcagaacct 1488
||||||||||| || | || ||||| ||||||||||| ||||| | || ||||| |||
Sbjct: 3 ccaagagcccaacgcaaaacttggtgtagacgatctgagagattaattggagcagaccct 62
Query: 1489 ttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaatgcatcttg 1548
|||||||| || | ||| || || ||||| |||||||| ||||| |||||||| |||
Sbjct: 63 ttgaatgctggccttggaggaatacaataaatagaccgccatccatggcaatgcattttg 122
Query: 1549 aaaccagttagaatatcttctgtaactgatccatagatccagccaatctcttttccccag 1608
|| || || | ||||| |||||||| || ||||| ||||| |||| ||| |||||||||
Sbjct: 123 aagcctgtcaatatatcctctgtaaccgaaccataaatccatccaacctcctttccccag 182
Query: 1609 tctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaaaagagaagca 1668
||||| || |||||||| ||||| ||||| ||||| || |||||||| | ||| ||||||
Sbjct: 183 tctgttttatcttcatagccacagctaataacatgaatggcttcttttagaagtgaagca 242
Query: 1669 ggact 1673
|||||
Sbjct: 243 ggact 247
Score = 81.8 bits (41), Expect = 2e-013
Identities = 110/133 (82%)
Strand = Plus / Plus
Query: 1939 caccacttgggccagcagttgcaagtccttgatggtggcttctttgttttgggggcatca 1998
||||| || |||||||| || |||||||||| |||| ||||| | ||| || ||||||
Sbjct: 492 caccattttggccagcaattacaagtccttgttggttccttctcagctttaggagcatca 551
Query: 1999 taaccatataatgcctgccttctaaatacacatccagtaccaacataaattggaccctga 2058
| ||||| | ||| |||||||| || |||||||||||||||||||| || || ||||||
Sbjct: 552 aatccataaagtgcttgccttctgaaaacacatccagtaccaacatatatgggtccctga 611
Query: 2059 ataccatccaaac 2071
|| ||||||||||
Sbjct: 612 atgccatccaaac 624
>gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_H09 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 537
Score = 109 bits (55), Expect = 9e-022
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| ||||| || ||||| ||||||||||||||||| |||| ||||
Sbjct: 249 tgcatcttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctct 190
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaa 1658
|||||||| || || ||||||||||| ||||| || |||||||| ||||| || |||||
Sbjct: 189 tttccccattccgttttgtcttcatatccacagctgatgacatgaatagcctccttcaa 131
>gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus pinaster cDNA clone PPJM13, mRNA
sequence
Length = 520
Score = 107 bits (54), Expect = 4e-021
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1513 cagtaaattgaccgccaaccatgacaatgcatcttgaaaccagttagaatatcttctgta 1572
|||||||| |||||||| || ||| ||||||||||| ||||| ||||| || |||||
Sbjct: 500 cagtaaatggaccgccagcctcgactgtgcatcttgaatccagtcagaatgtcctctgtg 441
Query: 1573 actgatccatagatccagccaatctcttttccccagtctgtcttgtcttcataaccacaa 1632
||||||||||||||||| |||| |||||||||||| || || ||||||||||| || ||
Sbjct: 440 actgatccatagatccatccaagctcttttccccattccgttttgtcttcatatccccag 381
Query: 1633 ctaatgacatgtatagcttctttcaa 1658
|| |||||||| ||||| || |||||
Sbjct: 380 ctgatgacatgaatagcctccttcaa 355
>gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV105_E07 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 758
Score = 107 bits (54), Expect = 4e-021
Identities = 174/214 (81%)
Strand = Plus / Minus
Query: 1458 acgatctgaaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagta 1517
||||||||||||||| | |||||||| || ||||||||| ||| ||| ||||||||
Sbjct: 321 acgatctgaaagattgattggtgcagatcccttgaatgcaggacgtgcaggcatgcagta 262
Query: 1518 aattgaccgccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactga 1577
||||| ||| || || |||||| || || ||||| | |||||||||||| || ||
Sbjct: 261 tattgaaatccagcctcgagcatgcattttaaacccagtcaaaatatcttctgtgacaga 202
Query: 1578 tccatagatccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaat 1637
||||| ||||| ||||||||||||||||| |||| |||||||||||| ||||| || ||
Sbjct: 201 accataaatccacccaatctcttttccccattctgacttgtcttcatatccacagctgat 142
Query: 1638 gacatgtatagcttctttcaaaagagaagcagga 1671
||||| || ||||||||||| | ||||||||||
Sbjct: 141 aacatgaatggcttctttcaataaagaagcagga 108
Score = 56.0 bits (28), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 1108 acacctccaatgacccagaactgctcattcctccaccagtcatcaat 1154
||||||||||| ||||| || | ||||||||||||||| ||||||||
Sbjct: 671 acacctccaataacccaaaattnctcattcctccaccattcatcaat 625
>gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D05_A029 5', mRNA sequence
Length = 763
Score = 107 bits (54), Expect = 4e-021
Identities = 201/250 (80%)
Strand = Plus / Minus
Query: 1406 tgctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctg 1465
||||||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||
Sbjct: 488 tgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctg 429
Query: 1466 aaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgacc 1525
| ||||| | ||| ||||| || |||||||| | || || ||||||||||| || |
Sbjct: 428 atagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagc 369
Query: 1526 gccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccataga 1585
|||| || | || |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct: 368 gccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccataga 309
Query: 1586 tccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgta 1645
|||| || | |||||| ||||| || || || ||||| || ||||| || || |||||||
Sbjct: 308 tccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcacatgta 249
Query: 1646 tagcttcttt 1655
||||||||||
Sbjct: 248 tagcttcttt 239
>gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_A01_A029 3', mRNA sequence
Length = 681
Score = 107 bits (54), Expect = 4e-021
Identities = 174/214 (81%)
Strand = Plus / Plus
Query: 1458 acgatctgaaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagta 1517
||||||||||||||| | |||||||| || ||||||||| ||| ||| ||||||||
Sbjct: 100 acgatctgaaagattgattggtgcagatcccttgaatgcaggacgtgcaggcatgcagta 159
Query: 1518 aattgaccgccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactga 1577
||||| ||| || || |||||| || || ||||| | |||||||||||| || ||
Sbjct: 160 tattgaaatccagcctcgagcatgcattttaaacccagtcaaaatatcttctgtgacaga 219
Query: 1578 tccatagatccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaat 1637
||||| ||||| ||||||||||||||||| |||| |||||||||||| ||||| || ||
Sbjct: 220 accataaatccacccaatctcttttccccattctgacttgtcttcatatccacagctgat 279
Query: 1638 gacatgtatagcttctttcaaaagagaagcagga 1671
||||| || ||||||||||| | ||||||||||
Sbjct: 280 aacatgaatggcttctttcaataaagaagcagga 313
>gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_55_A04_A029 5', mRNA sequence
Length = 695
Score = 107 bits (54), Expect = 4e-021
Identities = 174/214 (81%)
Strand = Plus / Minus
Query: 1458 acgatctgaaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagta 1517
||||||||||||||| | |||||||| || ||||||||| ||| ||| ||||||||
Sbjct: 273 acgatctgaaagattgattggtgcagatcccttgaatgcaggacgtgcaggcatgcagta 214
Query: 1518 aattgaccgccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactga 1577
||||| ||| || || |||||| || || ||||| | |||||||||||| || ||
Sbjct: 213 tattgaaatccagcctcgagcatgcattttaaacccagtcaaaatatcttctgtgacaga 154
Query: 1578 tccatagatccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaat 1637
||||| ||||| ||||||||||||||||| |||| |||||||||||| ||||| || ||
Sbjct: 153 accataaatccacccaatctcttttccccattctgacttgtcttcatatccacagctgat 94
Query: 1638 gacatgtatagcttctttcaaaagagaagcagga 1671
||||| || ||||||||||| | ||||||||||
Sbjct: 93 aacatgaatggcttctttcaataaagaagcagga 60
Score = 65.9 bits (33), Expect = 1e-008
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1108 acacctccaatgacccagaactgctcattcctccaccagtcatcaattccaac 1160
||||||||||| ||||| || ||||||||||||||||| |||||||| |||||
Sbjct: 623 acacctccaataacccaaaattgctcattcctccaccattcatcaatgccaac 571
>gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus taeda cDNA clone COLD1_9_H07_A029
5', mRNA sequence
Length = 853
Score = 107 bits (54), Expect = 4e-021
Identities = 201/250 (80%)
Strand = Plus / Minus
Query: 1406 tgctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctg 1465
||||||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||
Sbjct: 269 tgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctg 210
Query: 1466 aaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgacc 1525
| ||||| | ||| ||||| || |||||||| | || || ||||||||||| || |
Sbjct: 209 atagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagc 150
Query: 1526 gccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccataga 1585
|||| || | || |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct: 149 gccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccataga 90
Query: 1586 tccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgta 1645
|||| || | |||||| ||||| || || || ||||| || |||||| | || |||||||
Sbjct: 89 tccatccgacctctttcccccattcggttttctcttcgtagccacaaatgatcacatgta 30
Query: 1646 tagcttcttt 1655
||||||||||
Sbjct: 29 tagcttcttt 20
>gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_17_D10_A029 3', mRNA sequence
Length = 821
Score = 107 bits (54), Expect = 4e-021
Identities = 201/250 (80%)
Strand = Plus / Plus
Query: 1406 tgctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctg 1465
||||||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||
Sbjct: 463 tgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctg 522
Query: 1466 aaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgacc 1525
| ||||| | ||| ||||| || |||||||| | || || ||||||||||| || |
Sbjct: 523 atagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagc 582
Query: 1526 gccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccataga 1585
|||| || | || |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct: 583 gccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccataga 642
Query: 1586 tccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgta 1645
|||| || | |||||| ||||| || || || ||||| || ||||| || || |||||||
Sbjct: 643 tccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcacatgta 702
Query: 1646 tagcttcttt 1655
||||||||||
Sbjct: 703 tagcttcttt 712
>gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_14_B08_A029 3', mRNA sequence
Length = 632
Score = 107 bits (54), Expect = 4e-021
Identities = 201/250 (80%)
Strand = Plus / Plus
Query: 1406 tgctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctg 1465
||||||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||
Sbjct: 257 tgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctg 316
Query: 1466 aaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgacc 1525
| ||||| | ||| ||||| || |||||||| | || || ||||||||||| || |
Sbjct: 317 atagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagc 376
Query: 1526 gccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccataga 1585
|||| || | || |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct: 377 gccaccctcggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccataga 436
Query: 1586 tccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgta 1645
|||| || | |||||| ||||| || || || ||||| || ||||| || || |||||||
Sbjct: 437 tccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcacatgta 496
Query: 1646 tagcttcttt 1655
||||||||||
Sbjct: 497 tagcttcttt 506
>gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH43 3' end, mRNA sequence
Length = 770
Score = 107 bits (54), Expect = 4e-021
Identities = 252/318 (79%)
Strand = Plus / Minus
Query: 718 ggatcaatccgaacccaaaggagcgagaagattgaagccagcagaatggaccagacgatg 777
|||| |||||||||||| ||||| || || || || || || ||||| ||||| || ||
Sbjct: 318 ggattaatccgaacccataggagagaaaaaatggatgcgagtagaatagaccacacaata 259
Query: 778 acaatcgttggtgtcctgttttgccttccaaccaaacctttgagaaagggataaagatgg 837
||||| || ||||||| ||| |||||||| | ||||||||| || || ||||| | |||
Sbjct: 258 acaattgtgggtgtccggttctgccttcccatcaaaccttttaggaaaggatacaaatgc 199
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatgactcatatccg 897
||||||||||| || ||||| || || || || || || ||||||||||||||||||||
Sbjct: 198 acaatcacccagaaggcaaaaaaaagttttccgaacagagggccccatgactcatatcca 139
Query: 898 ttattgatcgcatttgaaacgccagcgaccacaccaatgaagttcaatagaagcaaggtg 957
||||| || ||||| || || ||||| || || ||||| | ||||| || ||| | ||
Sbjct: 138 ttattaatggcattagataccccagcaacaactccaattaggttcactataagtagtgtt 79
Query: 958 gtaggaggtatcaataaggtagtccatttgaatgtatatagctctgagaactcctcatca 1017
|| || || ||||| | ||| ||||| || |||| |||||||||||| || || ||||||
Sbjct: 78 gtggggggaatcaacagggttgtccacttaaatgcatatagctctgaaaaatcatcatca 19
Query: 1018 tctccaccctttgatgtc 1035
|| ||| | |||||||||
Sbjct: 18 tccccagcttttgatgtc 1
>dbj|BD235989.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 619
Score = 107 bits (54), Expect = 4e-021
Identities = 201/250 (80%)
Strand = Plus / Minus
Query: 1406 tgctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctg 1465
||||||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||
Sbjct: 368 tgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctg 309
Query: 1466 aaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgacc 1525
| ||||| | ||| ||||| || |||||||| | || || ||||||||||| || |
Sbjct: 308 atagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagc 249
Query: 1526 gccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccataga 1585
|||| || | || |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct: 248 gccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccataga 189
Query: 1586 tccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgta 1645
|||| || | |||||| ||||| || || || ||||| || ||||| || || |||||||
Sbjct: 188 tccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcacatgta 129
Query: 1646 tagcttcttt 1655
||||||||||
Sbjct: 128 tagcttcttt 119
>gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120E04 similar to Cellulose synthase, mRNA
sequence
Length = 431
Score = 105 bits (53), Expect = 1e-020
Identities = 113/133 (84%)
Strand = Plus / Minus
Query: 1539 atgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctc 1598
|||||| || || ||||| | |||||||||||| || || ||||| ||||| ||||||||
Sbjct: 327 atgcattttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctc 268
Query: 1599 ttttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaa 1658
||||||||| |||| |||||||||||| ||||| || || ||||| || |||||||||||
Sbjct: 267 ttttccccattctgacttgtcttcatatccacagctgataacatgaatggcttctttcaa 208
Query: 1659 aagagaagcagga 1671
| ||||||||||
Sbjct: 207 taaagaagcagga 195
>gb|DR101934.1|DR101934 STRR1_76_G04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_G04_A033 5', mRNA sequence
Length = 579
Score = 105 bits (53), Expect = 1e-020
Identities = 158/193 (81%)
Strand = Plus / Minus
Query: 1985 ttttgggggcatcataaccatataatgcctgccttctaaatacacatccagtaccaacat 2044
||||||| |||||||| ||||| | || || |||| || ||||| || ||||||||||
Sbjct: 230 ttttgggtgcatcatatccatagagagcttgtcttcggaaaacacaacctgtaccaacat 171
Query: 2045 aaattggaccctgaataccatccaaacctttcatgttgatatcaaaaaagacaacattcc 2104
| || || ||||| || ||||||| |||||||||||| |||||||| || ||| ||| |
Sbjct: 170 atataggtccctgtattccatccagacctttcatgtttatatcaaagaacacagtattgc 111
Query: 2105 ggttagcatatcggtcatggcgatcaatcccatcaaatctttgagggaactgtacatagc 2164
| || ||||||| ||||| | |||||| |||||||| || ||||||||||| |||||||
Sbjct: 110 gattggcatatctatcatgccaatcaataccatcaaacctctgagggaactgcacatagc 51
Query: 2165 aaaccttctttcc 2177
| |||||||||||
Sbjct: 50 agaccttctttcc 38
>gb|BE657157.1|BE657157 NXCI_064_G04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_064_G04 5' similar to Arabidopsis
thaliana sequence At4g18780 cellulose synthase catalytic
subunit (IRX1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 463
Score = 103 bits (52), Expect = 6e-020
Identities = 200/250 (80%)
Strand = Plus / Minus
Query: 1406 tgctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctg 1465
||||||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||
Sbjct: 411 tgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctg 352
Query: 1466 aaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgacc 1525
| ||||| | ||| ||||| || |||||||| | || || ||||||||||| || |
Sbjct: 351 atagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagc 292
Query: 1526 gccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccataga 1585
|||| || | | |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct: 291 gccaccctcgnnagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccataga 232
Query: 1586 tccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgta 1645
|||| || | |||||| ||||| || || || ||||| || ||||| || || |||||||
Sbjct: 231 tccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcacatgta 172
Query: 1646 tagcttcttt 1655
||||||||||
Sbjct: 171 tagcttcttt 162
>gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_103_E08 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 363
Score = 101 bits (51), Expect = 2e-019
Identities = 198/247 (80%)
Strand = Plus / Minus
Query: 1409 tgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctgaaa 1468
|||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||| |
Sbjct: 277 tgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctgata 218
Query: 1469 gattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgcc 1528
|||| | ||| ||||| || |||||||| | || || ||||||||||| || ||||
Sbjct: 217 gattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagcgcc 158
Query: 1529 aaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccatagatcc 1588
| || | || |||||||||||||| |||||||| |||||||| || || ||||||||||
Sbjct: 157 accctcggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccatagatcc 98
Query: 1589 agccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgtatag 1648
| || | |||||| ||||| || || || ||||| || ||||| || || ||||||||||
Sbjct: 97 atccgacctctttcccccattcggttttctcttcgtagccacagctgatcacatgtatag 38
Query: 1649 cttcttt 1655
|||||||
Sbjct: 37 cttcttt 31
>gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_100_C02 5' similar to Arabidopsis thaliana sequence
At5g05170 cellulose synthase catalytic subunit (Ath-B)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 405
Score = 99.6 bits (50), Expect = 9e-019
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| ||||| | |||| ||||||||||||||||| |||| ||||
Sbjct: 304 tgcatcttgaatccagtcagaatgtnnnctgtgactgatccatagatccatccaagctct 245
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttctttcaa 1658
|||||||| || || ||||||||||| ||||| || |||||||| ||||| || |||||
Sbjct: 244 tttccccattccgttttgtcttcatatccacagctgatgacatgaatagcctccttcaa 186
>gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_17_B06_A022 5', mRNA sequence
Length = 579
Score = 99.6 bits (50), Expect = 9e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 1105 gacacacctccaatgacccagaactgctcattcctccaccagtcatcaattccaacacca 1164
||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |||
Sbjct: 494 gacacacctccaatgacccagaattgttcattcctccaccattcatcaataccaacccca 435
Query: 1165 ctccatctcatttc 1178
||||||| ||||||
Sbjct: 434 ctccatcgcatttc 421
>gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_18_G11_A022 5', mRNA sequence
Length = 717
Score = 99.6 bits (50), Expect = 9e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 1105 gacacacctccaatgacccagaactgctcattcctccaccagtcatcaattccaacacca 1164
||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |||
Sbjct: 429 gacacacctccaatgacccagaattgttcattcctccaccattcatcaataccaacccca 370
Query: 1165 ctccatctcatttc 1178
||||||| ||||||
Sbjct: 369 ctccatcgcatttc 356
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 829 taaagatggacaatcacccaaaatgcaaa 857
||||||||||||||||||||||| |||||
Sbjct: 707 taaagatggacaatcacccaaaacgcaaa 679
>gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G07_A029 5', mRNA sequence
Length = 796
Score = 99.6 bits (50), Expect = 9e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 1105 gacacacctccaatgacccagaactgctcattcctccaccagtcatcaattccaacacca 1164
||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |||
Sbjct: 258 gacacacctccaatgacccagaattgttcattcctccaccattcatcaataccaacccca 199
Query: 1165 ctccatctcatttc 1178
||||||| ||||||
Sbjct: 198 ctccatcgcatttc 185
Score = 65.9 bits (33), Expect = 1e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 778 acaatcgttggtgtcctgttttgccttccaaccaaacctttgagaaagggataaagatgg 837
||||| || ||||||||||| || | ||| | ||||||||| || || || |||||||||
Sbjct: 588 acaattgtgggtgtcctgttctgtcgtcccatcaaacctttcaggaaagggtaaagatgg 529
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatg 886
|||||||||||||| ||||| || || || || || ||||| |||||||
Sbjct: 528 acaatcacccaaaacgcaaaaaagagttttccgaacaggggaccccatg 480
>gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_A07_A029 3', mRNA sequence
Length = 610
Score = 99.6 bits (50), Expect = 9e-019
Identities = 135/162 (83%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 1480 gcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaaccatgacaa 1539
||||| ||||||||||| | ||||| || || |||||||| |||||||| || ||
Sbjct: 450 gcagaccctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtg 509
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
||||||||||| ||||| ||||| || ||||| ||||||||||||||||| |||| ||||
Sbjct: 510 tgcatcttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctct 569
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgaca 1641
|||||||| || || ||||||||||| ||||| || ||||||
Sbjct: 570 tttccccattccgt-ttgtcttcatatccacagctgatgaca 610
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1111 cctccaatgacccagaactgctcattcctccaccagtcatcaattccaacaccactccat 1170
|||||||| ||||||||||| ||||| | |||||| || ||||| | || ||||||||
Sbjct: 81 cctccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccac 140
Query: 1171 ctcatttc 1178
||||||||
Sbjct: 141 ctcatttc 148
>gb|BE187012.1|BE187012 NXNV_157_H10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_157_H10 5' similar to Arabidopsis thaliana sequence
At4g18780 cellulose synthase catalytic subunit (IRX1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 477
Score = 95.6 bits (48), Expect = 1e-017
Identities = 193/242 (79%)
Strand = Plus / Minus
Query: 1414 aagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctgaaagattc 1473
||||| |||||||| || | ||||| ||||| || ||||| ||||||||||| |||||
Sbjct: 361 aagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctgatagattg 302
Query: 1474 agaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgaccgccaacca 1533
| ||| ||||| || |||||||| || || ||||||||||| || ||||| ||
Sbjct: 301 ataggagcagaccccttgaatgctggtnncttgggcatgcagtaaatggagcgccaccct 242
Query: 1534 tgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagcca 1593
| || |||||||||||||| |||||||| |||||||| || || ||||||||||| ||
Sbjct: 241 cggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccatagatccatccg 182
Query: 1594 atctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttct 1653
| |||||| ||||| || || || ||||| || ||||| || || |||||||||||||||
Sbjct: 181 acctctttcccccattcggttttctcttcgtagccacagctgatcacatgtatagcttct 122
Query: 1654 tt 1655
||
Sbjct: 121 tt 120
>gb|BF186171.1|BF186171 NXCI_133_H05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_133_H05 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 209
Score = 95.6 bits (48), Expect = 1e-017
Identities = 117/140 (83%)
Strand = Plus / Minus
Query: 2188 tccatcataaaacacattgcttcctttatagccttgctgttgttgatgtagtgatcacaa 2247
||||||||||| ||||||||||| | ||||||||||| || | |||||||||||||
Sbjct: 149 tccatcataaagcacattgcttcgcgaacggccttgctgttattaacgtagtgatcacaa 90
Query: 2248 tccaagtttaacaaatatggagcatttgttagtacagcagagactcggaccaatgcattc 2307
|||||||| | || ||||| || || || ||||| ||||||||||| ||||||||||||
Sbjct: 89 tccaagttcagcaggtatggggcgttcgtcagtacggcagagactcgaaccaatgcattc 30
Query: 2308 atagcaccagctttcttatg 2327
|| ||||| || ||||||||
Sbjct: 29 atggcaccggccttcttatg 10
>gb|BF517368.1|BF517368 NXSI_013_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_013_F11 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 332
Score = 95.6 bits (48), Expect = 1e-017
Identities = 117/140 (83%)
Strand = Plus / Minus
Query: 2188 tccatcataaaacacattgcttcctttatagccttgctgttgttgatgtagtgatcacaa 2247
||||||||||| ||||||||||| | ||||||||||| || | |||||||||||||
Sbjct: 142 tccatcataaagcacattgcttcgcgaacggccttgctgttattaacgtagtgatcacaa 83
Query: 2248 tccaagtttaacaaatatggagcatttgttagtacagcagagactcggaccaatgcattc 2307
|||||||| | || ||||| || || || ||||| ||||||||||| ||||||||||||
Sbjct: 82 tccaagttcagcaggtatggggcgttcgtcagtacggcagagactcgaaccaatgcattc 23
Query: 2308 atagcaccagctttcttatg 2327
|| ||||| || ||||||||
Sbjct: 22 atggcaccggccttcttatg 3
>gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_F09_A029 5', mRNA sequence
Length = 802
Score = 95.6 bits (48), Expect = 1e-017
Identities = 195/244 (79%)
Strand = Plus / Minus
Query: 1406 tgctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctg 1465
||||||| ||||| |||||||| || | ||||| ||||| || ||||| ||||||||||
Sbjct: 246 tgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctg 187
Query: 1466 aaagattcagaggtgcagaacctttgaatgcaacccgtttaggtatgcagtaaattgacc 1525
| ||||| | ||| ||||| || |||||||| | || || ||||||||||| || |
Sbjct: 186 atagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagc 127
Query: 1526 gccaaccatgacaatgcatcttgaaaccagttagaatatcttctgtaactgatccataga 1585
|||| || | || |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct: 126 gccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccataga 67
Query: 1586 tccagccaatctcttttccccagtctgtcttgtcttcataaccacaactaatgacatgta 1645
|||| || | |||||| ||||| || || || ||||| || ||||| || || |||||||
Sbjct: 66 tccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcacatgta 7
Query: 1646 tagc 1649
||||
Sbjct: 6 tagc 3
>gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV055_C03 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 630
Score = 91.7 bits (46), Expect = 2e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 1105 gacacacctccaatgacccagaactgctcattcctccaccagtcatcaattccaacacca 1164
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 85 gacacacctccaatcacccagaactgctcattcctccaccattcatcaatgccaaccccg 26
Query: 1165 ctccat 1170
||||||
Sbjct: 25 ctccat 20
>gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_069_F11 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 497
Score = 91.7 bits (46), Expect = 2e-016
Identities = 157/194 (80%)
Strand = Plus / Minus
Query: 718 ggatcaatccgaacccaaaggagcgagaagattgaagccagcagaatggaccagacgatg 777
|||| |||||||||||| ||||| || || || || || || ||||| ||||| || ||
Sbjct: 265 ggattaatccgaacccataggagagaaaaaatggatgcgagtagaatagaccacacaata 206
Query: 778 acaatcgttggtgtcctgttttgccttccaaccaaacctttgagaaagggataaagatgg 837
||||| || ||||||| ||| |||||||| | ||||||||| || || ||||| | |||
Sbjct: 205 acaattgtgggtgtccggttctgccttcccatcaaaccttttaggaaaggatacaaatgc 146
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatgactcatatccg 897
||||||||||| || ||||| || || || || || || ||||||||||||||||||||
Sbjct: 145 acaatcacccagaaggcaaaaaaaagttttccgaacagagggccccatgactcatatcca 86
Query: 898 ttattgatcgcatt 911
||||| || |||||
Sbjct: 85 ttattaatggcatt 72
>gb|AA556746.1|AA556746 588 Loblolly pine NA Pinus taeda cDNA clone 1NAB10D, mRNA sequence
Length = 546
Score = 87.7 bits (44), Expect = 3e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 1540 tgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctct 1599
|||||||||||||| |||||||| |||||||| || || ||||||||||| || | ||||
Sbjct: 413 tgcatcttgaaacctgttagaatgtcttctgtcacagaaccatagatccatccgacctct 354
Query: 1600 tttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttcttt 1655
|| ||||| || || || ||||| || ||||| || || |||||||||||||||||
Sbjct: 353 ttcccccattcggttttctcttcgtagccacagctgatcacatgtatagcttcttt 298
Score = 46.1 bits (23), Expect = 0.011
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 1407 gctgaagaagatctcaatagacccaagagcccaccgaagcacctggtgaagacgatctga 1466
|||||| ||||| |||||||| || ||||| ||||| || ||||| |||||||||||
Sbjct: 546 gctgaataagatttcaatagaacccnatgcccaacgaagaacttggtgcagacgatctga 487
Query: 1467 aagattcagaggtgcagaacctttgaatgc 1496
||||| | ||| ||||| || ||||||||
Sbjct: 486 tagattgataggagcagaccccttgaatgc 457
>gb|AW010875.1|AW010875 ST12E01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST12E01, mRNA sequence
Length = 386
Score = 85.7 bits (43), Expect = 1e-014
Identities = 98/117 (83%)
Strand = Plus / Minus
Query: 1539 atgcatcttgaaaccagttagaatatcttctgtaactgatccatagatccagccaatctc 1598
|||||| || || ||||||| ||||||| | || | ||| ||||| ||||| ||||||||
Sbjct: 335 atgcattttaaatccagttaaaatatctcccgtcantgacccataaatccaaccaatctc 276
Query: 1599 ttttccccagtctgtcttgtcttcataaccacaactaatgacatgtatagcttcttt 1655
|||||||||||||||||||||||| ||||| |||| ||||| |||||||||||
Sbjct: 275 acgtccccagtctgtcttgtcttcatacccacagntaataacatggatagcttcttt 219
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 534,810
Number of Sequences: 355925
Number of extensions: 534810
Number of successful extensions: 144909
Number of sequences better than 0.5: 232
Number of HSP's better than 0.5 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143773
Number of HSP's gapped (non-prelim): 1019
length of query: 4065
length of database: 217,277,237
effective HSP length: 20
effective length of query: 4045
effective length of database: 210,158,737
effective search space: 850092091165
effective search space used: 850092091165
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)