BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804904.2.2
(798 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX254201.1|BX254201 BX254201 Pinus pinaster differenciat... 52 4e-005
gb|CR354638.1|CR354638 CR354638 Pinus pinaster differenciat... 52 4e-005
gb|CR354740.1|CR354740 CR354740 Pinus pinaster differenciat... 52 4e-005
gb|BX682672.1|BX682672 BX682672 Pinus pinaster differenciat... 50 1e-004
gb|BM158310.1|BM158310 NXLV_032_D03_F NXLV (Nsf Xylem Late ... 42 0.034
gb|BQ290460.1|BQ290460 NXRV046_E07_F NXRV (Nsf Xylem Root w... 42 0.034
gb|BQ290949.1|BQ290949 NXRV051_G01_F NXRV (Nsf Xylem Root w... 42 0.034
gb|BQ698581.1|BQ698581 NXPV_071_F06_F NXPV (Nsf Xylem Plani... 42 0.034
gb|BQ698941.1|BQ698941 NXRV117_D04_F NXRV (Nsf Xylem Root w... 42 0.034
gb|BQ702611.1|BQ702611 NXSI_130_E08_F NXSI (Nsf Xylem Side ... 42 0.034
gb|CX714968.1|CX714968 RTPQ1_28_E12.g1_A032 Roots treated w... 42 0.034
gb|DR081240.1|DR081240 RTFEPL1_28_G08.b1_A029 Roots plus ad... 42 0.034
gb|DR096714.1|DR096714 STRR1_29_G01.g1_A033 Stem Response R... 42 0.034
gb|DR386241.1|DR386241 RTHG1_13_G06.g1_A029 Roots plus adde... 42 0.034
gb|DR687844.1|DR687844 EST1077927 Normalized pine embryo li... 42 0.034
gb|DT634364.1|DT634364 EST1149295 Normalized pine embryo li... 42 0.034
>gb|BX254201.1|BX254201 BX254201 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP094G06, mRNA sequence
Length = 677
Score = 52.0 bits (26), Expect = 4e-005
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 153 gtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcccctgatatggtc 212
||||| || |||||||| |||||||||||| | || | || ||||| ||| | |||||
Sbjct: 168 gtcgtgattgtcgatgttgtcgaccagaaccgcgccttggttgatgcacctaagatggtg 227
Query: 213 aggtgccaggtgaacttcaagcggctctcacttactgacatcaagattga 262
|| ||||| ||||||| ||| |||||||||| ||||| ||||| |||||
Sbjct: 228 agatgccaaatgaactttaagaggctctcactaactgatatcaaaattga 277
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 424 tcatgctggctaagattaagagggg 448
>gb|CR354638.1|CR354638 CR354638 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 124C07, mRNA sequence
Length = 638
Score = 52.0 bits (26), Expect = 4e-005
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 153 gtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcccctgatatggtc 212
||||| || |||||||| |||||||||||| | || | || ||||| ||| | |||||
Sbjct: 170 gtcgtgattgtcgatgttgtcgaccagaaccgcgccttggttgatgcacctaagatggtg 229
Query: 213 aggtgccaggtgaacttcaagcggctctcacttactgacatcaagattga 262
|| ||||| ||||||| ||| |||||||||| ||||| ||||| |||||
Sbjct: 230 agatgccaaatgaactttaagaggctctcactaactgatatcaaaattga 279
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 426 tcatgctggctaagattaagagggg 450
>gb|CR354740.1|CR354740 CR354740 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 125G11, mRNA sequence
Length = 631
Score = 52.0 bits (26), Expect = 4e-005
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 153 gtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcccctgatatggtc 212
||||| || |||||||| |||||||||||| | || | || ||||| ||| | |||||
Sbjct: 168 gtcgtgattgtcgatgttgtcgaccagaaccgcgccttggttgatgcacctaagatggtg 227
Query: 213 aggtgccaggtgaacttcaagcggctctcacttactgacatcaagattga 262
|| ||||| ||||||| ||| |||||||||| ||||| ||||| |||||
Sbjct: 228 agatgccaaatgaactttaagaggctctcactaactgatatcaaaattga 277
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 424 tcatgctggctaagattaagagggg 448
>gb|BX682672.1|BX682672 BX682672 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 119G05 similar to Probable 60 ribosomal
protein L14 (Hydroxyproline-rich glycoprotein HRGP1),
mRNA sequence
Length = 308
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 162 gtcgatgtggtcgaccagaacagggcacttgtggatgcccctgatatggtcaggtgccag 221
|||||||| |||||||||||| | || | || ||||| ||| | ||||| || |||||
Sbjct: 306 gtcgatgttgtcgaccagaaccgcgccttggttgatgcacctaagatggtgagatgccaa 247
Query: 222 gtgaacttcaagcggctctcacttactgacatcaagattga 262
||||||| ||| |||||||||| ||||| ||||| |||||
Sbjct: 246 atgaactttaagaggctctcactaactgatatcaaaattga 206
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 59 tcatgctggctaagattaagagggg 35
>gb|BM158310.1|BM158310 NXLV_032_D03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_032_D03 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 457
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 105 tcatgctggctaagattaagagggg 129
>gb|BQ290460.1|BQ290460 NXRV046_E07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV046_E07 5' similar to Arabidopsis thaliana
sequence At2g20450 60S ribosomal protein L14 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 383 tcatgctggctaagattaagagggg 407
>gb|BQ290949.1|BQ290949 NXRV051_G01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV051_G01 5' similar to Arabidopsis thaliana
sequence At2g20450 60S ribosomal protein L14 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 536
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 383 tcatgctggctaagattaagagggg 407
>gb|BQ698581.1|BQ698581 NXPV_071_F06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_F06 5' similar to Arabidopsis
thaliana sequence At4g27090 ribosomal protein L14 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 525
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 187 tcatgctggctaagattaagagggg 211
>gb|BQ698941.1|BQ698941 NXRV117_D04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV117_D04 5' similar to Arabidopsis thaliana
sequence At2g20450 60S ribosomal protein L14 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 385 tcatgctggctaagattaagagggg 409
>gb|BQ702611.1|BQ702611 NXSI_130_E08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_130_E08 5' similar to Arabidopsis thaliana
sequence At2g20450 60S ribosomal protein L14 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 394 tcatgctggctaagattaagagggg 418
>gb|CX714968.1|CX714968 RTPQ1_28_E12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_28_E12_A032 5', mRNA sequence
Length = 847
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 376 tcatgctggctaagattaagagggg 400
>gb|DR081240.1|DR081240 RTFEPL1_28_G08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_28_G08_A029 3', mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 195 tcatgctggctaagattaagagggg 171
>gb|DR096714.1|DR096714 STRR1_29_G01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_G01_A033 5', mRNA sequence
Length = 708
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 336 tcatgctggctaagattaagagggg 360
>gb|DR386241.1|DR386241 RTHG1_13_G06.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_G06_A029 5', mRNA sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 349 tcatgctggctaagattaagagggg 373
>gb|DR687844.1|DR687844 EST1077927 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABX25 3' end, mRNA sequence
Length = 841
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 484 tcatgctggctaagattaagagggg 508
>gb|DT634364.1|DT634364 EST1149295 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG518 3' end, mRNA sequence
Length = 803
Score = 42.1 bits (21), Expect = 0.034
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 409 tcatgctggcgaagattaagagggg 433
|||||||||| ||||||||||||||
Sbjct: 492 tcatgctggctaagattaagagggg 516
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,119
Number of Sequences: 355925
Number of extensions: 90119
Number of successful extensions: 23991
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23959
Number of HSP's gapped (non-prelim): 32
length of query: 798
length of database: 217,277,237
effective HSP length: 19
effective length of query: 779
effective length of database: 210,514,662
effective search space: 163990921698
effective search space used: 163990921698
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)