BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804898.2.1
(739 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO175243.1|CO175243 NDL1_53_A10.g1_A029 Needles control ... 50 1e-004
gb|BF516773.1|BF516773 NXSI_003_B11_F NXSI (Nsf Xylem Side ... 42 0.032
gb|CX646520.1|CX646520 COLD1_9_H01.g1_A029 Root cold Pinus ... 42 0.032
gb|CX647330.1|CX647330 COLD1_15_G09.b1_A029 Root cold Pinus... 42 0.032
gb|CX648030.1|CX648030 COLD1_26_C06.b1_A029 Root cold Pinus... 42 0.032
gb|CX651603.1|CX651603 COLD1_53_C02.g1_A029 Root cold Pinus... 42 0.032
gb|CX653031.1|CX653031 COLD1_63_A10.b1_A029 Root cold Pinus... 42 0.032
gb|CX653109.1|CX653109 COLD1_63_A10.g1_A029 Root cold Pinus... 42 0.032
gb|DR068582.1|DR068582 RTDK1_1_E01.g1_A029 Roots, dark Pinu... 42 0.032
gb|DR071353.1|DR071353 RTDK1_19_G05.b1_A029 Roots, dark Pin... 42 0.032
gb|DR072066.1|DR072066 RTDK1_23_H03.g1_A029 Roots, dark Pin... 42 0.032
gb|DR101310.1|DR101310 STRR1_72_B03.b1_A033 Stem Response R... 42 0.032
dbj|BD224468.1| Materials and methods for the modification ... 42 0.032
emb|AJ297297.1|PPI297297 Pinus pinaster partial mRNA for ca... 42 0.032
gb|AF277843.1| Pinus taeda clone 62b1f microsatellite PtTX3... 42 0.032
gb|DR025455.1|DR025455 STRS1_71_E09.g1_A034 Shoot tip pitch... 40 0.13
gb|DR118474.1|DR118474 RTMG1_17_F04.b1_A029 Roots minus mag... 40 0.13
gb|DR118553.1|DR118553 RTMG1_17_F04.g1_A029 Roots minus mag... 40 0.13
gb|CO366156.1|CO366156 RTK1_26_E10.b1_A029 Roots minus pota... 38 0.49
gb|CO366244.1|CO366244 RTK1_26_E10.g1_A029 Roots minus pota... 38 0.49
gb|CX648629.1|CX648629 COLD1_29_H04.g1_A029 Root cold Pinus... 38 0.49
gb|DR051645.1|DR051645 RTBOR1_31_A09.g1_A029 Roots plus add... 38 0.49
gb|DR071816.1|DR071816 RTDK1_22_F08.b1_A029 Roots, dark Pin... 38 0.49
gb|DR071898.1|DR071898 RTDK1_22_F08.g1_A029 Roots, dark Pin... 38 0.49
>gb|CO175243.1|CO175243 NDL1_53_A10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_A10_A029 5', mRNA sequence
Length = 837
Score = 50.1 bits (25), Expect = 1e-004
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| ||||| || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 599 atgttcgagcacataccgtctgccgatgcagtcatgatgaagtggatcctccatgactgg 540
Query: 197 g 197
|
Sbjct: 539 g 539
>gb|BF516773.1|BF516773 NXSI_003_B11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_003_B11 5' similar to Arabidopsis thaliana
sequence At1g63140 caffeic O-methyltransferase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 402
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 7 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 66
Query: 197 g 197
|
Sbjct: 67 g 67
>gb|CX646520.1|CX646520 COLD1_9_H01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_H01_A029 5', mRNA sequence
Length = 830
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 520 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 461
Query: 197 g 197
|
Sbjct: 460 g 460
>gb|CX647330.1|CX647330 COLD1_15_G09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_15_G09_A029 3', mRNA sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 138 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 197
Query: 197 g 197
|
Sbjct: 198 g 198
>gb|CX648030.1|CX648030 COLD1_26_C06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_C06_A029 3', mRNA sequence
Length = 820
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 306 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 365
Query: 197 g 197
|
Sbjct: 366 g 366
>gb|CX651603.1|CX651603 COLD1_53_C02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_C02_A029 5', mRNA sequence
Length = 816
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 676 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 735
Query: 197 g 197
|
Sbjct: 736 g 736
>gb|CX653031.1|CX653031 COLD1_63_A10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_A10_A029 3', mRNA sequence
Length = 809
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 179 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 238
Query: 197 g 197
|
Sbjct: 239 g 239
>gb|CX653109.1|CX653109 COLD1_63_A10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_A10_A029 5', mRNA sequence
Length = 895
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 834 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 893
Query: 197 g 197
|
Sbjct: 894 g 894
>gb|DR068582.1|DR068582 RTDK1_1_E01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_E01_A029 5', mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 414 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 355
Query: 197 g 197
|
Sbjct: 354 g 354
>gb|DR071353.1|DR071353 RTDK1_19_G05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_G05_A029 3', mRNA sequence
Length = 743
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 345 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 404
Query: 197 g 197
|
Sbjct: 405 g 405
>gb|DR072066.1|DR072066 RTDK1_23_H03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_H03_A029 5', mRNA sequence
Length = 741
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 257 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 316
Query: 197 g 197
|
Sbjct: 317 g 317
>gb|DR101310.1|DR101310 STRR1_72_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_72_B03_A033 3', mRNA sequence
Length = 734
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 227 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 286
Query: 197 g 197
|
Sbjct: 287 g 287
>dbj|BD224468.1| Materials and methods for the modification of plant lignin content
Length = 682
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 140 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 199
Query: 197 g 197
|
Sbjct: 200 g 200
>emb|AJ297297.1|PPI297297 Pinus pinaster partial mRNA for caffeic acid O-methyltransferase
(comt gene)
Length = 946
Score = 42.1 bits (21), Expect = 0.032
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 718 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 777
Query: 197 g 197
|
Sbjct: 778 g 778
>gb|AF277843.1| Pinus taeda clone 62b1f microsatellite PtTX3088 sequence
Length = 524
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ccgccgccgccgccgtcgtcg 35
|||||||||||||||||||||
Sbjct: 329 ccgccgccgccgccgtcgtcg 349
>gb|DR025455.1|DR025455 STRS1_71_E09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_E09_A034 5', mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.13
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 351 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 292
>gb|DR118474.1|DR118474 RTMG1_17_F04.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_F04_A029 3', mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.13
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 267 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 326
>gb|DR118553.1|DR118553 RTMG1_17_F04.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_F04_A029 5', mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.13
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 137 atgttcgagcacatcccgtcggctgacgcactcatgctcaagtggatcctgcacgactgg 196
|||||||||||||| || || || || ||| ||||| | ||||||||||| || ||||||
Sbjct: 456 atgttcgagcacataccttctgccgatgcagtcatgatgaagtggatcctccatgactgg 515
>gb|CO366156.1|CO366156 RTK1_26_E10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_E10_A029 3', mRNA sequence
Length = 826
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 15 ccgccgccgccgccgtcgtcgccgcct 41
||||||||||||||| || ||||||||
Sbjct: 473 ccgccgccgccgccgccgccgccgcct 499
>gb|CO366244.1|CO366244 RTK1_26_E10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_E10_A029 5', mRNA sequence
Length = 765
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 15 ccgccgccgccgccgtcgtcgccgcct 41
||||||||||||||| || ||||||||
Sbjct: 475 ccgccgccgccgccgccgccgccgcct 501
>gb|CX648629.1|CX648629 COLD1_29_H04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_H04_A029 5', mRNA sequence
Length = 822
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 15 ccgccgccgccgccgtcgtcgccgcct 41
||||||||||||||| || ||||||||
Sbjct: 488 ccgccgccgccgccgccgccgccgcct 514
>gb|DR051645.1|DR051645 RTBOR1_31_A09.g1_A029 Roots plus added boron Pinus taeda cDNA
clone RTBOR1_31_A09_A029 5', mRNA sequence
Length = 693
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 15 ccgccgccgccgccgtcgtcgccgcct 41
|||||||||||||| |||||||||||
Sbjct: 55 ccgccgccgccgcccccgtcgccgcct 81
>gb|DR071816.1|DR071816 RTDK1_22_F08.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_F08_A029 3', mRNA sequence
Length = 712
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 15 ccgccgccgccgccgtcgtcgccgcct 41
||||||||||||||| || ||||||||
Sbjct: 362 ccgccgccgccgccgccgccgccgcct 388
>gb|DR071898.1|DR071898 RTDK1_22_F08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_F08_A029 5', mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 0.49
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 15 ccgccgccgccgccgtcgtcgccgcct 41
||||||||||||||| || ||||||||
Sbjct: 439 ccgccgccgccgccgccgccgccgcct 465
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,596
Number of Sequences: 355925
Number of extensions: 73596
Number of successful extensions: 20829
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20771
Number of HSP's gapped (non-prelim): 37
length of query: 739
length of database: 217,277,237
effective HSP length: 19
effective length of query: 720
effective length of database: 210,514,662
effective search space: 151570556640
effective search space used: 151570556640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)